Wall clock time and date at job start Mon Mar 30 2020 02:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00182 * 2 1 4 4 H 1.48500 * 109.47265 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47109 * 300.00398 * 3 2 1 6 6 H 1.48498 * 109.46908 * 59.99941 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00205 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00464 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47421 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47034 * 179.97438 * 10 9 7 12 12 O 1.42896 * 109.47055 * 180.02562 * 11 10 9 13 13 C 1.42904 * 114.00313 * 180.02562 * 12 11 10 14 14 C 1.52997 * 109.47396 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47319 * 64.99884 * 14 13 12 16 16 C 1.42902 * 114.00186 * 180.02562 * 15 14 13 17 17 C 1.52995 * 117.49622 * 218.61892 * 16 15 14 18 18 C 1.52994 * 117.49857 * 149.99662 * 16 15 14 19 19 H 0.96996 * 119.99838 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46637 * 59.99495 * 9 7 2 21 21 H 1.08999 * 109.46635 * 300.00139 * 9 7 2 22 22 H 1.09007 * 109.47013 * 59.99979 * 10 9 7 23 23 H 1.08998 * 109.47287 * 300.00326 * 10 9 7 24 24 H 1.08999 * 109.47215 * 60.00489 * 11 10 9 25 25 H 1.08998 * 109.47516 * 300.00389 * 11 10 9 26 26 H 1.09001 * 109.46993 * 59.99365 * 13 12 11 27 27 H 1.09004 * 109.46505 * 300.00140 * 13 12 11 28 28 H 1.09002 * 109.47153 * 304.99576 * 14 13 12 29 29 H 1.09001 * 109.46832 * 184.99767 * 14 13 12 30 30 H 1.09002 * 115.54532 * 4.32983 * 16 15 14 31 31 H 1.08997 * 117.50686 * 0.02562 * 17 16 15 32 32 H 1.09003 * 117.49393 * 145.01845 * 17 16 15 33 33 H 1.08998 * 117.50151 * 214.98095 * 18 16 15 34 34 H 1.08998 * 117.49984 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 8 2.4088 -6.0732 0.0018 13 6 1.7943 -7.3634 0.0018 14 6 2.8772 -8.4442 0.0031 15 8 3.6156 -8.3772 1.2247 16 6 4.6579 -9.3493 1.3279 17 6 4.8863 -9.9977 2.6948 18 6 5.8908 -8.9781 2.1544 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6240 -2.5567 0.8903 22 1 2.8719 -3.6043 0.8906 23 1 2.8719 -3.6043 -0.8894 24 1 0.8533 -5.0452 -0.8886 25 1 0.8538 -5.0446 0.8913 26 1 1.1744 -7.4706 -0.8883 27 1 1.1738 -7.4702 0.8916 28 1 3.5514 -8.2840 -0.8383 29 1 2.4112 -9.4255 -0.0863 30 1 4.8121 -9.9688 0.4444 31 1 4.2412 -9.6832 3.5152 32 1 5.1906 -11.0443 2.7107 33 1 6.8561 -9.3537 1.8149 34 1 5.9071 -7.9922 2.6190 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712031243.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:34 Heat of formation + Delta-G solvation = -102.683107 kcal Electronic energy + Delta-G solvation = -13702.186027 eV Core-core repulsion = 11213.983104 eV Total energy + Delta-G solvation = -2488.202923 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.70506 -38.76685 -36.16873 -35.62990 -33.56471 -30.65279 -28.33309 -24.85171 -23.57365 -23.28174 -22.86277 -21.98492 -18.62111 -18.30729 -17.60267 -16.93968 -16.48265 -16.38577 -15.72088 -15.30288 -15.03067 -14.52997 -14.28757 -13.61902 -13.25700 -13.16892 -12.74504 -12.54898 -12.42418 -12.32729 -12.17571 -11.87508 -11.68090 -11.48584 -11.33932 -11.18595 -10.57835 -10.54299 -10.05069 -8.22179 -6.33277 1.40219 1.40701 1.54692 2.39807 2.54793 2.74790 2.93548 3.11069 3.90781 3.98887 4.05287 4.14221 4.22086 4.25875 4.32798 4.50442 4.54728 4.59637 4.62976 4.76185 4.81517 4.92104 4.95939 5.02244 5.15749 5.24361 5.48091 5.68445 5.81333 6.17104 6.28002 6.38021 6.82275 7.35897 8.90182 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.048722 B = 0.004243 C = 0.003993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.550471 B = 6597.689503 C = 7009.715692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.969 3.031 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.276 1.276 7 C -0.546 4.546 8 H 0.058 0.942 9 C 0.028 3.972 10 C -0.097 4.097 11 C 0.073 3.927 12 O -0.406 6.406 13 C 0.051 3.949 14 C 0.067 3.933 15 O -0.383 6.383 16 C 0.000 4.000 17 C -0.182 4.182 18 C -0.193 4.193 19 H 0.265 0.735 20 H 0.000 1.000 21 H -0.004 1.004 22 H 0.048 0.952 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.097 0.903 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.121 0.879 34 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.100 -20.430 0.634 21.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.793 3.207 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.135 4.135 11 C -0.003 4.003 12 O -0.326 6.326 13 C -0.025 4.025 14 C -0.009 4.009 15 O -0.302 6.302 16 C -0.057 4.057 17 C -0.220 4.220 18 C -0.230 4.230 19 H 0.074 0.926 20 H 0.018 0.982 21 H 0.015 0.985 22 H 0.067 0.933 23 H 0.073 0.927 24 H 0.073 0.927 25 H 0.063 0.937 26 H 0.105 0.895 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.115 0.885 30 H 0.151 0.849 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.107 -20.163 0.775 21.393 hybrid contribution -0.188 0.930 -0.026 0.949 sum 6.919 -19.233 0.749 20.453 Atomic orbital electron populations 1.70092 1.07737 1.27865 1.51527 1.25991 0.95854 1.03405 0.94542 0.85347 0.78942 0.78491 0.77954 1.18799 1.20041 1.20181 1.21685 0.93548 0.92325 1.50846 0.92386 1.18930 0.94205 0.92452 0.95372 1.21395 0.98637 0.92419 1.01033 1.22479 0.91652 0.86102 1.00075 1.87909 1.34583 1.14528 1.95557 1.22796 0.95398 0.82429 1.01915 1.22739 0.93546 0.98044 0.86560 1.87903 1.47351 1.55649 1.39309 1.22991 0.91047 0.94978 0.96716 1.23446 1.02211 0.99319 0.96981 1.23395 0.94997 1.00356 1.04292 0.92612 0.98191 0.98546 0.93332 0.92713 0.92685 0.93669 0.89485 0.92767 0.91971 0.88495 0.84862 0.89447 0.85748 0.86102 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 -0.01 5.46 84.65 0.46 0.45 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 4 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 5 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.55 -32.33 9.11 25.60 0.23 -32.10 16 8 H 0.06 3.34 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.51 4.97 29.85 0.15 1.66 16 10 C -0.10 -4.42 5.52 30.59 0.17 -4.25 16 11 C 0.07 2.77 5.94 71.98 0.43 3.20 16 12 O -0.41 -14.50 10.31 -144.35 -1.49 -15.99 16 13 C 0.05 1.30 6.32 71.98 0.45 1.76 16 14 C 0.07 1.44 6.19 71.98 0.45 1.89 16 15 O -0.38 -10.43 10.56 -144.35 -1.52 -11.96 16 16 C 0.00 0.00 6.44 30.59 0.20 0.20 16 17 C -0.18 -3.07 10.48 30.59 0.32 -2.75 16 18 C -0.19 -3.66 10.48 30.59 0.32 -3.34 16 19 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 20 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 21 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 22 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 23 H 0.05 2.46 8.14 -2.39 -0.02 2.44 16 24 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.13 1.85 7.93 -2.39 -0.02 1.83 16 31 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -69.42 293.89 3.51 -65.90 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: 1.04 Total: 5.26 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 3.18 Total: -33.28 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: 0.28 Total: -57.15 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -3.01 Total: -27.95 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -69.42 3.51 -65.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712031243.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.779 kcal (2) G-P(sol) polarization free energy of solvation -69.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds