Wall clock time and date at job start Mon Mar 30 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.42895 * 113.99914 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47237 * 29.99956 * 12 11 10 14 14 C 1.53003 * 109.47360 * 270.00188 * 12 11 10 15 15 C 1.52997 * 109.47539 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46878 * 60.00211 * 15 14 12 17 17 C 1.52999 * 109.47069 * 299.99897 * 16 15 14 18 18 H 1.09001 * 109.47409 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47436 * 300.00185 * 17 16 15 20 20 C 1.52994 * 109.47114 * 150.00256 * 12 11 10 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.09003 * 109.46962 * 300.00697 * 14 12 11 27 27 H 1.09005 * 109.46945 * 59.99863 * 14 12 11 28 28 H 1.08997 * 109.47342 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.47063 * 300.00306 * 15 14 12 30 30 H 1.08995 * 109.47543 * 59.99853 * 16 15 14 31 31 H 1.09003 * 109.47384 * 180.02562 * 16 15 14 32 32 H 0.96695 * 114.00233 * 300.00354 * 19 17 16 33 33 H 1.08997 * 109.47130 * 300.00051 * 20 12 11 34 34 H 1.09008 * 109.47251 * 60.00027 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5307 -4.8997 0.0001 12 6 2.3706 -6.0557 -0.0005 13 1 3.3046 -5.8265 0.5126 14 6 2.6694 -6.4685 -1.4432 15 6 3.5693 -7.7058 -1.4438 16 6 2.8594 -8.8529 -0.7218 17 6 2.5606 -8.4403 0.7209 18 1 2.0545 -9.2573 1.2351 19 8 3.7850 -8.1393 1.3935 20 6 1.6603 -7.2025 0.7213 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 1.7355 -6.6976 -1.9564 27 1 3.1755 -5.6514 -1.9574 28 1 3.7825 -7.9996 -2.4715 29 1 4.5031 -7.4762 -0.9307 30 1 1.9255 -9.0826 -1.2348 31 1 3.5006 -9.7344 -0.7218 32 1 4.4055 -8.8799 1.4313 33 1 1.4474 -6.9086 1.7491 34 1 0.7263 -7.4318 0.2081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712783934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:26 Heat of formation + Delta-G solvation = -128.453039 kcal Electronic energy + Delta-G solvation = -14549.958644 eV Core-core repulsion = 12060.638252 eV Total energy + Delta-G solvation = -2489.320392 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.34215 -36.93871 -34.52081 -33.08881 -30.60561 -29.78787 -28.70358 -24.54848 -22.49972 -22.07336 -20.80042 -19.72019 -17.06246 -16.59278 -15.90355 -15.26056 -14.72775 -14.64461 -14.44482 -13.84503 -13.12286 -12.97060 -12.55912 -12.28619 -12.14657 -11.73181 -11.17509 -11.16324 -10.90988 -10.82130 -10.71814 -10.43975 -10.35212 -10.02605 -9.72545 -9.38306 -9.15766 -8.71615 -8.30571 -5.99062 -4.02416 3.35150 3.38920 3.41500 4.16246 4.24520 4.50964 4.69372 4.76484 5.01279 5.23258 5.34659 5.36763 5.45611 5.47725 5.56960 5.70221 5.86014 6.00186 6.03713 6.15757 6.23977 6.29333 6.35382 6.51518 6.54249 6.97138 7.56632 7.62416 7.85131 7.90384 8.20002 8.41901 9.04080 9.60905 11.12655 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.062047 B = 0.005356 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.161313 B = 5226.759638 C = 5264.449921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.286 1.286 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.055 0.945 9 C 0.025 3.975 10 C 0.071 3.929 11 O -0.389 6.389 12 C 0.092 3.908 13 H 0.063 0.937 14 C -0.142 4.142 15 C -0.112 4.112 16 C -0.153 4.153 17 C 0.108 3.892 18 H 0.056 0.944 19 O -0.562 6.562 20 C -0.110 4.110 21 H 0.262 0.738 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.033 0.967 25 H 0.034 0.966 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.372 0.628 33 H 0.074 0.926 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.265 -17.841 -0.778 18.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.012 4.012 10 C -0.005 4.005 11 O -0.308 6.308 12 C 0.034 3.966 13 H 0.081 0.919 14 C -0.179 4.179 15 C -0.150 4.150 16 C -0.190 4.190 17 C 0.049 3.951 18 H 0.074 0.926 19 O -0.367 6.367 20 C -0.147 4.147 21 H 0.072 0.928 22 H 0.042 0.958 23 H 0.042 0.958 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.080 0.920 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.607 -17.132 -0.717 18.040 hybrid contribution 0.967 0.369 -0.158 1.047 sum 6.574 -16.762 -0.874 18.027 Atomic orbital electron populations 1.69977 1.06072 1.26808 1.50226 1.24995 0.94872 0.99253 0.95158 0.86588 0.79513 0.82840 0.78642 1.21189 1.20167 1.20195 1.21039 0.92980 0.90643 1.51527 0.92631 1.19064 0.94263 0.89519 0.98335 1.22877 0.96258 0.83337 0.98046 1.87923 1.34226 1.13808 1.94883 1.21828 0.94045 0.86560 0.94155 0.91934 1.22048 1.00064 0.97593 0.98242 1.21395 0.99103 0.94671 0.99784 1.22275 1.01488 0.98362 0.96922 1.21789 0.85419 0.96758 0.91121 0.92592 1.86593 1.29024 1.41845 1.79212 1.21597 0.97814 0.93317 1.01972 0.92837 0.95812 0.95824 0.94888 0.94787 0.91498 0.91650 0.92145 0.91448 0.90921 0.91952 0.78122 0.90722 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -15.38 9.11 -34.44 -0.31 -15.69 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.71 5.34 -27.89 -0.15 0.56 16 10 C 0.07 1.64 5.69 37.16 0.21 1.85 16 11 O -0.39 -8.36 9.99 -35.23 -0.35 -8.71 16 12 C 0.09 1.56 2.46 -26.73 -0.07 1.49 16 13 H 0.06 1.11 7.32 -51.93 -0.38 0.73 16 14 C -0.14 -2.06 5.54 -26.73 -0.15 -2.20 16 15 C -0.11 -1.26 5.78 -26.73 -0.15 -1.41 16 16 C -0.15 -1.44 5.64 -26.73 -0.15 -1.59 16 17 C 0.11 1.16 3.77 -26.70 -0.10 1.06 16 18 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 19 O -0.56 -6.34 11.97 -35.23 -0.42 -6.76 16 20 C -0.11 -1.54 5.32 -26.70 -0.14 -1.68 16 21 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 22 H 0.02 0.70 8.14 -51.92 -0.42 0.28 16 23 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.03 0.74 7.87 -51.93 -0.41 0.33 16 25 H 0.03 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 1.01 7.87 -51.93 -0.41 0.60 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.37 2.46 9.08 45.56 0.41 2.88 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 LS Contribution 277.46 15.07 4.18 4.18 Total: -1.00 -32.46 277.46 -6.94 -39.39 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.95 Total: -2.34 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -1.11 Total: -15.98 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.77 Total: -15.47 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.46 -6.94 -39.39 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712783934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.059 kcal (2) G-P(sol) polarization free energy of solvation -32.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds