Wall clock time and date at job start Mon Mar 30 2020 02:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 O 1.42904 * 109.47293 * 179.97438 * 10 9 7 12 12 C 1.42895 * 113.99914 * 179.97438 * 11 10 9 13 13 H 1.08995 * 109.47237 * 29.99956 * 12 11 10 14 14 C 1.53003 * 109.47360 * 270.00188 * 12 11 10 15 15 C 1.52997 * 109.47539 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.46878 * 60.00211 * 15 14 12 17 17 C 1.52999 * 109.47069 * 299.99897 * 16 15 14 18 18 H 1.09001 * 109.47409 * 179.97438 * 17 16 15 19 19 O 1.42903 * 109.47436 * 300.00185 * 17 16 15 20 20 C 1.52994 * 109.47114 * 150.00256 * 12 11 10 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 25 25 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 26 26 H 1.09003 * 109.46962 * 300.00697 * 14 12 11 27 27 H 1.09005 * 109.46945 * 59.99863 * 14 12 11 28 28 H 1.08997 * 109.47342 * 180.02562 * 15 14 12 29 29 H 1.09000 * 109.47063 * 300.00306 * 15 14 12 30 30 H 1.08995 * 109.47543 * 59.99853 * 16 15 14 31 31 H 1.09003 * 109.47384 * 180.02562 * 16 15 14 32 32 H 0.96695 * 114.00233 * 300.00354 * 19 17 16 33 33 H 1.08997 * 109.47130 * 300.00051 * 20 12 11 34 34 H 1.09008 * 109.47251 * 60.00027 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5307 -4.8997 0.0001 12 6 2.3706 -6.0557 -0.0005 13 1 3.3046 -5.8265 0.5126 14 6 2.6694 -6.4685 -1.4432 15 6 3.5693 -7.7058 -1.4438 16 6 2.8594 -8.8529 -0.7218 17 6 2.5606 -8.4403 0.7209 18 1 2.0545 -9.2573 1.2351 19 8 3.7850 -8.1393 1.3935 20 6 1.6603 -7.2025 0.7213 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 2.8719 -3.6044 -0.8906 25 1 2.8719 -3.6044 0.8894 26 1 1.7355 -6.6976 -1.9564 27 1 3.1755 -5.6514 -1.9574 28 1 3.7825 -7.9996 -2.4715 29 1 4.5031 -7.4762 -0.9307 30 1 1.9255 -9.0826 -1.2348 31 1 3.5006 -9.7344 -0.7218 32 1 4.4055 -8.8799 1.4313 33 1 1.4474 -6.9086 1.7491 34 1 0.7263 -7.4318 0.2081 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712783934.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:26 Heat of formation + Delta-G solvation = -151.666599 kcal Electronic energy + Delta-G solvation = -14550.965259 eV Core-core repulsion = 12060.638252 eV Total energy + Delta-G solvation = -2490.327007 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45692 -38.34495 -35.76114 -35.09069 -32.27615 -31.06823 -30.01301 -26.65949 -23.54999 -23.24312 -22.79414 -20.76883 -18.76965 -17.83823 -17.34799 -16.74051 -16.52273 -16.25359 -15.54463 -15.00600 -14.55434 -14.46643 -14.24020 -13.50325 -13.36058 -13.10084 -13.07162 -12.67699 -12.49229 -12.35606 -11.94444 -11.87125 -11.75006 -11.49700 -11.37830 -11.16041 -10.76911 -10.60361 -10.21819 -8.24969 -6.38848 1.39827 1.44535 1.52625 2.36827 2.85401 3.08384 3.39302 3.74843 3.90564 4.04919 4.18281 4.23568 4.34151 4.40174 4.44295 4.50236 4.62260 4.68282 4.88594 4.98179 5.03412 5.05713 5.18055 5.23720 5.31416 5.34881 5.45571 5.54875 5.71479 6.10362 6.46676 6.76224 6.99715 7.30922 8.88068 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.062047 B = 0.005356 C = 0.005317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.161313 B = 5226.759638 C = 5264.449921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.977 3.023 4 H -0.280 1.280 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.550 4.550 8 H 0.066 0.934 9 C 0.029 3.971 10 C 0.089 3.911 11 O -0.411 6.411 12 C 0.084 3.916 13 H 0.052 0.948 14 C -0.140 4.140 15 C -0.107 4.107 16 C -0.147 4.147 17 C 0.113 3.887 18 H 0.082 0.918 19 O -0.584 6.584 20 C -0.112 4.112 21 H 0.267 0.733 22 H -0.007 1.007 23 H -0.005 1.005 24 H 0.041 0.959 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.049 0.951 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.093 0.907 32 H 0.394 0.606 33 H 0.058 0.942 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.858 -18.888 -1.071 20.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.800 3.200 4 H -0.205 1.205 5 H -0.189 1.189 6 H -0.188 1.188 7 C -0.588 4.588 8 H 0.084 0.916 9 C -0.008 4.008 10 C 0.013 3.987 11 O -0.331 6.331 12 C 0.027 3.973 13 H 0.070 0.930 14 C -0.178 4.178 15 C -0.145 4.145 16 C -0.185 4.185 17 C 0.054 3.946 18 H 0.100 0.900 19 O -0.392 6.392 20 C -0.150 4.150 21 H 0.076 0.924 22 H 0.011 0.989 23 H 0.013 0.987 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.068 0.932 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.112 0.888 32 H 0.243 0.757 33 H 0.076 0.924 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.221 -18.219 -1.009 19.624 hybrid contribution 0.434 0.631 -0.049 0.767 sum 7.655 -17.588 -1.059 19.211 Atomic orbital electron populations 1.70124 1.08063 1.28232 1.50702 1.26068 0.95850 1.03699 0.94106 0.85334 0.78145 0.77153 0.79394 1.20481 1.18914 1.18839 1.21439 0.93670 0.91517 1.52137 0.91613 1.18928 0.94555 0.91873 0.95424 1.22442 0.94724 0.83042 0.98517 1.87875 1.35654 1.14447 1.95164 1.22157 0.93365 0.85618 0.96199 0.93012 1.22031 1.00728 0.98929 0.96105 1.21382 0.98216 0.93613 1.01253 1.22264 1.02271 0.98506 0.95412 1.21754 0.85043 0.95221 0.92551 0.90045 1.86542 1.29657 1.43679 1.79368 1.21667 0.98910 0.93887 1.00524 0.92449 0.98868 0.98684 0.94049 0.94445 0.91597 0.93223 0.90373 0.91745 0.90229 0.88811 0.75658 0.92353 0.89484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.65 13.29 21.45 0.28 -58.36 16 2 C 0.00 0.06 5.46 84.66 0.46 0.53 16 3 Si 0.98 45.00 29.54 68.60 2.03 47.03 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 6 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 7 C -0.55 -32.86 9.11 25.60 0.23 -32.63 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.72 5.34 29.85 0.16 1.88 16 10 C 0.09 4.26 5.69 71.98 0.41 4.67 16 11 O -0.41 -18.27 9.99 -148.98 -1.49 -19.76 16 12 C 0.08 2.85 2.46 30.59 0.08 2.92 16 13 H 0.05 1.85 7.32 -2.39 -0.02 1.83 16 14 C -0.14 -3.99 5.54 30.59 0.17 -3.82 16 15 C -0.11 -2.15 5.78 30.59 0.18 -1.97 16 16 C -0.15 -2.25 5.64 30.59 0.17 -2.08 16 17 C 0.11 2.14 3.77 30.61 0.12 2.26 16 18 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 19 O -0.58 -11.86 11.97 -148.98 -1.78 -13.65 16 20 C -0.11 -3.09 5.32 30.61 0.16 -2.93 16 21 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 22 H -0.01 -0.45 8.14 -2.38 -0.02 -0.47 16 23 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 24 H 0.04 1.89 7.87 -2.39 -0.02 1.87 16 25 H 0.04 1.75 8.09 -2.39 -0.02 1.73 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.05 1.53 7.87 -2.38 -0.02 1.52 16 28 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.34 7.68 -2.39 -0.02 1.32 16 30 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.39 4.01 9.08 -74.06 -0.67 3.34 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.09 2.26 8.14 -2.38 -0.02 2.24 16 Total: -1.00 -71.40 277.46 1.56 -69.83 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.39 Total: 6.07 kcal Atomic # 6 Polarization: -33.31 SS G_CDS: 2.14 Total: -31.17 kcal Atomic # 7 Polarization: -58.65 SS G_CDS: 0.28 Total: -58.36 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -3.27 Total: -33.40 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -71.40 1.56 -69.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712783934.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.833 kcal (2) G-P(sol) polarization free energy of solvation -71.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds