Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48502 * 109.46672 * 269.99723 * 3 2 1 5 5 H 1.48498 * 109.47279 * 29.99301 * 3 2 1 6 6 H 1.48494 * 109.47301 * 149.99408 * 3 2 1 7 7 C 1.37872 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00058 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00252 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.47114 * 180.02562 * 9 7 2 11 11 O 1.42897 * 109.47010 * 179.97438 * 10 9 7 12 12 C 1.42896 * 114.00160 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47119 * 329.99773 * 12 11 10 14 14 C 1.52995 * 109.47430 * 89.99582 * 12 11 10 15 15 C 1.52999 * 109.47574 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47006 * 300.00256 * 15 14 12 17 17 C 1.53003 * 109.47376 * 59.99492 * 16 15 14 18 18 H 1.08997 * 109.47258 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46459 * 60.00190 * 17 16 15 20 20 C 1.52999 * 109.47142 * 300.00420 * 17 16 15 21 21 H 0.97001 * 120.00077 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47568 * 59.99657 * 9 7 2 23 23 H 1.09002 * 109.47055 * 299.99498 * 9 7 2 24 24 H 1.08996 * 109.47193 * 59.99415 * 10 9 7 25 25 H 1.09002 * 109.46740 * 299.99679 * 10 9 7 26 26 H 1.09005 * 109.47353 * 300.00336 * 14 12 11 27 27 H 1.08997 * 109.47049 * 60.00444 * 14 12 11 28 28 H 1.09001 * 109.47293 * 59.99997 * 15 14 12 29 29 H 1.08999 * 109.47676 * 180.02562 * 15 14 12 30 30 H 1.08997 * 109.47124 * 299.99555 * 16 15 14 31 31 H 1.08999 * 109.47164 * 179.97438 * 16 15 14 32 32 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 33 33 H 1.08997 * 109.46848 * 179.97438 * 20 17 16 34 34 H 1.08997 * 109.46819 * 299.99607 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4506 -2.6364 0.0009 12 6 6.0319 -3.9418 0.0002 13 1 5.3667 -4.6360 0.5138 14 6 6.2392 -4.4071 -1.4424 15 6 6.8610 -5.8050 -1.4432 16 6 8.2097 -5.7637 -0.7218 17 6 8.0024 -5.2984 0.7209 18 1 8.9632 -5.2685 1.2347 19 8 7.1298 -6.2083 1.3939 20 6 7.3805 -3.9005 0.7216 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6799 0.8910 23 1 3.8752 -0.6804 -0.8889 24 1 3.6586 -3.1502 -0.8892 25 1 3.6580 -3.1505 0.8908 26 1 5.2783 -4.4369 -1.9563 27 1 6.9044 -3.7129 -1.9560 28 1 6.1955 -6.4990 -0.9298 29 1 7.0092 -6.1363 -2.4710 30 1 8.8752 -5.0698 -1.2353 31 1 8.6525 -6.7597 -0.7220 32 1 7.4612 -7.1159 1.4317 33 1 7.2324 -3.5693 1.7494 34 1 8.0461 -3.2066 0.2082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712783936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -125.143840 kcal Electronic energy + Delta-G solvation = -14593.951893 eV Core-core repulsion = 12104.774999 eV Total energy + Delta-G solvation = -2489.176894 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.40865 -37.04425 -34.58604 -33.05453 -30.84548 -29.99892 -28.93695 -24.65164 -22.54798 -22.10729 -20.60787 -19.74338 -17.18575 -16.85308 -16.13093 -15.32386 -14.83035 -14.71644 -14.25429 -13.78751 -13.30836 -13.15696 -12.57788 -12.47051 -12.32211 -11.85158 -11.40508 -11.28151 -10.97257 -10.88476 -10.68170 -10.46012 -10.15765 -9.83018 -9.77659 -9.74780 -9.21136 -8.79568 -8.51755 -6.04186 -4.03296 3.34789 3.41392 3.48685 4.11277 4.18539 4.47763 4.64322 4.71687 4.95354 5.17501 5.28162 5.30461 5.40222 5.41621 5.51230 5.64350 5.80441 5.95502 5.97086 6.09328 6.16747 6.18639 6.25869 6.43106 6.46433 6.74724 7.18744 7.43360 7.52885 7.73987 8.01519 8.51642 8.98419 9.57537 11.08825 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.057982 B = 0.005758 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.789891 B = 4861.781613 C = 4926.831940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.069 3.931 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.072 0.928 9 C -0.009 4.009 10 C 0.078 3.922 11 O -0.392 6.392 12 C 0.093 3.907 13 H 0.065 0.935 14 C -0.142 4.142 15 C -0.112 4.112 16 C -0.153 4.153 17 C 0.108 3.892 18 H 0.056 0.944 19 O -0.562 6.562 20 C -0.110 4.110 21 H 0.264 0.736 22 H 0.024 0.976 23 H 0.019 0.981 24 H 0.039 0.961 25 H 0.041 0.959 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.373 0.627 33 H 0.074 0.926 34 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.460 -11.755 -0.755 21.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.561 4.561 8 H 0.091 0.909 9 C -0.047 4.047 10 C 0.002 3.998 11 O -0.312 6.312 12 C 0.035 3.965 13 H 0.083 0.917 14 C -0.180 4.180 15 C -0.150 4.150 16 C -0.191 4.191 17 C 0.049 3.951 18 H 0.074 0.926 19 O -0.367 6.367 20 C -0.147 4.147 21 H 0.074 0.926 22 H 0.042 0.958 23 H 0.037 0.963 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.220 0.780 33 H 0.093 0.907 34 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 17.039 -10.915 -0.690 20.247 hybrid contribution 0.521 0.143 -0.182 0.570 sum 17.560 -10.772 -0.872 20.619 Atomic orbital electron populations 1.69908 1.06287 1.27017 1.50897 1.24956 0.94739 0.99189 0.94319 0.86746 0.80476 0.83313 0.78648 1.20185 1.21322 1.18764 1.20959 0.88886 0.94745 1.51476 0.90939 1.19540 0.96521 0.91272 0.97355 1.22643 0.77717 1.00516 0.98932 1.87878 1.21943 1.26415 1.94973 1.21840 0.94349 0.86026 0.94303 0.91707 1.22048 1.01511 0.96298 0.98120 1.21397 0.96169 0.97551 0.99863 1.22279 0.98450 1.01455 0.96888 1.21770 0.92298 0.89849 0.91159 0.92577 1.86594 1.48914 1.21991 1.79172 1.21587 0.96834 0.94346 1.01936 0.92627 0.95809 0.96272 0.94250 0.94107 0.91537 0.91533 0.91355 0.92081 0.90953 0.91894 0.78043 0.90713 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.30 13.96 55.43 0.77 -27.52 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.40 27.47 -169.99 -4.67 17.73 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 7 C -0.52 -15.46 9.66 -34.44 -0.33 -15.80 16 8 H 0.07 2.27 7.99 -52.49 -0.42 1.85 16 9 C -0.01 -0.24 4.41 -27.88 -0.12 -0.37 16 10 C 0.08 1.73 5.69 37.16 0.21 1.94 16 11 O -0.39 -7.95 9.99 -35.23 -0.35 -8.30 16 12 C 0.09 1.50 2.46 -26.73 -0.07 1.43 16 13 H 0.06 1.11 7.33 -51.93 -0.38 0.72 16 14 C -0.14 -1.97 5.54 -26.73 -0.15 -2.12 16 15 C -0.11 -1.21 5.78 -26.73 -0.15 -1.36 16 16 C -0.15 -1.37 5.64 -26.73 -0.15 -1.53 16 17 C 0.11 1.11 3.77 -26.73 -0.10 1.01 16 18 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 19 O -0.56 -6.12 11.97 -35.23 -0.42 -6.54 16 20 C -0.11 -1.46 5.32 -26.73 -0.14 -1.60 16 21 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 22 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 23 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 24 H 0.04 0.85 7.87 -51.93 -0.41 0.44 16 25 H 0.04 0.90 8.09 -51.93 -0.42 0.48 16 26 H 0.07 0.99 7.87 -51.93 -0.41 0.58 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.07 0.77 7.68 -51.93 -0.40 0.37 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.37 2.35 9.08 45.56 0.41 2.77 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 273.84 15.07 4.13 4.13 Total: -1.00 -32.67 273.84 -6.56 -39.23 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -4.91 Total: -2.31 kcal Atomic # 6 Polarization: -15.31 SS G_CDS: -1.10 Total: -16.41 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.77 Total: -27.52 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.77 Total: -14.84 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -4.67 Total: 17.73 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.67 -6.56 -39.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712783936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.912 kcal (2) G-P(sol) polarization free energy of solvation -32.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds