Wall clock time and date at job start Mon Mar 30 2020 02:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99904 * 2 1 4 4 H 1.48502 * 109.46672 * 269.99723 * 3 2 1 5 5 H 1.48498 * 109.47279 * 29.99301 * 3 2 1 6 6 H 1.48494 * 109.47301 * 149.99408 * 3 2 1 7 7 C 1.37872 * 120.00377 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00058 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00252 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.47114 * 180.02562 * 9 7 2 11 11 O 1.42897 * 109.47010 * 179.97438 * 10 9 7 12 12 C 1.42896 * 114.00160 * 180.02562 * 11 10 9 13 13 H 1.09001 * 109.47119 * 329.99773 * 12 11 10 14 14 C 1.52995 * 109.47430 * 89.99582 * 12 11 10 15 15 C 1.52999 * 109.47574 * 180.02562 * 14 12 11 16 16 C 1.53001 * 109.47006 * 300.00256 * 15 14 12 17 17 C 1.53003 * 109.47376 * 59.99492 * 16 15 14 18 18 H 1.08997 * 109.47258 * 180.02562 * 17 16 15 19 19 O 1.42903 * 109.46459 * 60.00190 * 17 16 15 20 20 C 1.52999 * 109.47142 * 300.00420 * 17 16 15 21 21 H 0.97001 * 120.00077 * 0.02562 * 1 2 3 22 22 H 1.08996 * 109.47568 * 59.99657 * 9 7 2 23 23 H 1.09002 * 109.47055 * 299.99498 * 9 7 2 24 24 H 1.08996 * 109.47193 * 59.99415 * 10 9 7 25 25 H 1.09002 * 109.46740 * 299.99679 * 10 9 7 26 26 H 1.09005 * 109.47353 * 300.00336 * 14 12 11 27 27 H 1.08997 * 109.47049 * 60.00444 * 14 12 11 28 28 H 1.09001 * 109.47293 * 59.99997 * 15 14 12 29 29 H 1.08999 * 109.47676 * 180.02562 * 15 14 12 30 30 H 1.08997 * 109.47124 * 299.99555 * 16 15 14 31 31 H 1.08999 * 109.47164 * 179.97438 * 16 15 14 32 32 H 0.96700 * 114.00311 * 60.00313 * 19 17 16 33 33 H 1.08997 * 109.46848 * 179.97438 * 20 17 16 34 34 H 1.08997 * 109.46819 * 299.99607 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1939 0.0011 10 6 4.0216 -2.6365 0.0010 11 8 5.4506 -2.6364 0.0009 12 6 6.0319 -3.9418 0.0002 13 1 5.3667 -4.6360 0.5138 14 6 6.2392 -4.4071 -1.4424 15 6 6.8610 -5.8050 -1.4432 16 6 8.2097 -5.7637 -0.7218 17 6 8.0024 -5.2984 0.7209 18 1 8.9632 -5.2685 1.2347 19 8 7.1298 -6.2083 1.3939 20 6 7.3805 -3.9005 0.7216 21 1 -0.4850 0.8401 -0.0004 22 1 3.8746 -0.6799 0.8910 23 1 3.8752 -0.6804 -0.8889 24 1 3.6586 -3.1502 -0.8892 25 1 3.6580 -3.1505 0.8908 26 1 5.2783 -4.4369 -1.9563 27 1 6.9044 -3.7129 -1.9560 28 1 6.1955 -6.4990 -0.9298 29 1 7.0092 -6.1363 -2.4710 30 1 8.8752 -5.0698 -1.2353 31 1 8.6525 -6.7597 -0.7220 32 1 7.4612 -7.1159 1.4317 33 1 7.2324 -3.5693 1.7494 34 1 8.0461 -3.2066 0.2082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712783936.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:28 Heat of formation + Delta-G solvation = -148.955397 kcal Electronic energy + Delta-G solvation = -14594.984439 eV Core-core repulsion = 12104.774999 eV Total energy + Delta-G solvation = -2490.209440 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.46677 -38.37137 -35.75554 -35.06351 -32.64860 -31.14836 -30.08759 -26.67666 -23.51970 -23.19602 -22.57725 -20.75890 -19.16685 -17.90168 -17.39430 -16.70087 -16.39893 -16.29226 -15.53884 -15.05517 -14.83108 -14.53622 -14.34300 -13.52984 -13.40672 -13.25438 -13.12728 -12.66924 -12.32689 -12.14323 -11.97828 -11.86917 -11.78202 -11.58822 -11.40210 -11.20778 -10.83697 -10.73795 -10.24214 -8.35000 -6.41353 1.34894 1.36697 1.50468 2.33663 2.75981 2.99818 3.39649 3.74751 3.90613 4.03834 4.17736 4.22589 4.33952 4.35637 4.41385 4.50029 4.62024 4.68360 4.80060 4.94998 5.02092 5.04926 5.15763 5.18830 5.25247 5.30106 5.38990 5.45246 5.54650 6.17409 6.40197 6.64311 6.98853 7.23926 8.81300 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.057982 B = 0.005758 C = 0.005682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.789891 B = 4861.781613 C = 4926.831940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.263 1.263 5 H -0.277 1.277 6 H -0.252 1.252 7 C -0.539 4.539 8 H 0.036 0.964 9 C -0.005 4.005 10 C 0.091 3.909 11 O -0.405 6.405 12 C 0.084 3.916 13 H 0.049 0.951 14 C -0.140 4.140 15 C -0.109 4.109 16 C -0.147 4.147 17 C 0.111 3.889 18 H 0.082 0.918 19 O -0.585 6.585 20 C -0.111 4.111 21 H 0.270 0.730 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.039 0.961 25 H 0.035 0.965 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.393 0.607 33 H 0.060 0.940 34 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.134 -11.817 -1.072 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.775 3.225 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.176 1.176 7 C -0.577 4.577 8 H 0.054 0.946 9 C -0.042 4.042 10 C 0.015 3.985 11 O -0.325 6.325 12 C 0.027 3.973 13 H 0.067 0.933 14 C -0.178 4.178 15 C -0.146 4.146 16 C -0.184 4.184 17 C 0.053 3.947 18 H 0.100 0.900 19 O -0.394 6.394 20 C -0.149 4.149 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.243 0.757 33 H 0.079 0.921 34 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.732 -11.014 -1.007 22.621 hybrid contribution -0.355 0.057 -0.069 0.367 sum 19.377 -10.957 -1.076 22.286 Atomic orbital electron populations 1.70040 1.08154 1.28505 1.51805 1.25929 0.95660 1.03428 0.93584 0.85625 0.79323 0.78058 0.79483 1.18780 1.20242 1.17597 1.21216 0.91006 0.93708 1.51778 0.94553 1.19413 0.94030 0.93536 0.97271 1.22259 0.79320 0.98265 0.98672 1.87826 1.20217 1.29284 1.95183 1.22152 0.95244 0.83740 0.96180 0.93293 1.22032 1.01069 0.98574 0.96155 1.21387 0.97038 0.94987 1.01206 1.22263 0.97333 1.03353 0.95485 1.21772 0.92589 0.87892 0.92474 0.90003 1.86547 1.49850 1.23597 1.79374 1.21654 0.95379 0.97183 1.00642 0.92099 0.95900 0.95824 0.94305 0.94701 0.93349 0.91144 0.92024 0.90454 0.90027 0.89029 0.75704 0.92148 0.89092 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.28 13.96 21.45 0.30 -59.99 16 2 C 0.01 0.70 5.47 84.65 0.46 1.17 16 3 Si 0.95 45.84 27.47 68.60 1.88 47.72 16 4 H -0.26 -12.06 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.25 -11.61 6.54 99.48 0.65 -10.96 16 7 C -0.54 -32.69 9.66 25.60 0.25 -32.44 16 8 H 0.04 2.39 7.99 -2.91 -0.02 2.36 16 9 C -0.01 -0.26 4.41 29.85 0.13 -0.13 16 10 C 0.09 4.13 5.69 71.99 0.41 4.54 16 11 O -0.40 -16.40 9.99 -148.98 -1.49 -17.89 16 12 C 0.08 2.68 2.46 30.59 0.08 2.76 16 13 H 0.05 1.70 7.33 -2.39 -0.02 1.68 16 14 C -0.14 -3.77 5.54 30.59 0.17 -3.60 16 15 C -0.11 -2.10 5.78 30.59 0.18 -1.92 16 16 C -0.15 -2.10 5.64 30.60 0.17 -1.93 16 17 C 0.11 1.97 3.77 30.59 0.12 2.08 16 18 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 19 O -0.59 -11.54 11.97 -148.98 -1.78 -13.32 16 20 C -0.11 -2.80 5.32 30.59 0.16 -2.64 16 21 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 22 H 0.02 1.17 7.20 -2.39 -0.02 1.16 16 23 H 0.02 1.19 7.57 -2.39 -0.02 1.17 16 24 H 0.04 1.73 7.87 -2.39 -0.02 1.72 16 25 H 0.03 1.59 8.09 -2.39 -0.02 1.57 16 26 H 0.05 1.44 7.87 -2.38 -0.02 1.42 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.06 1.28 7.68 -2.39 -0.02 1.26 16 29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.39 3.90 9.08 -74.06 -0.67 3.22 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -70.97 273.84 1.37 -69.60 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: 0.33 Total: 5.98 kcal Atomic # 6 Polarization: -34.23 SS G_CDS: 2.12 Total: -32.11 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.30 Total: -59.99 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -3.27 Total: -31.21 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 1.88 Total: 47.72 kcal Total: -70.97 1.37 -69.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712783936.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.358 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds