Wall clock time and date at job start Mon Mar 30 2020 02:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 120.00000 * 2 1 4 4 H 1.48494 * 109.47557 * 270.00513 * 3 2 1 5 5 H 1.48501 * 109.46818 * 30.00537 * 3 2 1 6 6 H 1.48500 * 109.46936 * 149.99981 * 3 2 1 7 7 C 1.37878 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00539 * 0.02562 * 7 2 1 9 9 C 1.50698 * 119.99539 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47170 * 179.97438 * 9 7 2 11 11 O 1.42901 * 109.47367 * 180.02562 * 10 9 7 12 12 C 1.42903 * 113.99972 * 180.02562 * 11 10 9 13 13 H 1.08992 * 109.47388 * 29.99901 * 12 11 10 14 14 C 1.53000 * 109.46726 * 269.99642 * 12 11 10 15 15 C 1.52997 * 109.47060 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 59.99960 * 15 14 12 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 19 19 O 1.42906 * 109.47029 * 179.97438 * 17 16 15 20 20 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 21 21 H 0.97003 * 120.00386 * 359.97438 * 1 2 3 22 22 H 1.09003 * 109.47210 * 60.00014 * 9 7 2 23 23 H 1.09000 * 109.47923 * 300.00105 * 9 7 2 24 24 H 1.09003 * 109.46783 * 60.00071 * 10 9 7 25 25 H 1.08999 * 109.47541 * 300.00155 * 10 9 7 26 26 H 1.09002 * 109.47398 * 300.00244 * 14 12 11 27 27 H 1.09001 * 109.47194 * 60.00425 * 14 12 11 28 28 H 1.08996 * 109.47853 * 180.02562 * 15 14 12 29 29 H 1.09002 * 109.47153 * 300.00319 * 15 14 12 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 32 32 H 0.96698 * 114.00140 * 59.99238 * 19 17 16 33 33 H 1.08993 * 109.47194 * 179.97438 * 20 17 16 34 34 H 1.09002 * 109.46695 * 59.99734 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5466 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 8 5.4505 -2.6365 -0.0009 12 6 6.0317 -3.9420 -0.0014 13 1 5.3666 -4.6357 -0.5155 14 6 6.2392 -4.4083 1.4410 15 6 6.8620 -5.8058 1.4405 16 6 8.2108 -5.7628 0.7195 17 6 8.0034 -5.2964 -0.7229 18 1 7.3385 -5.9904 -1.2371 19 8 9.2633 -5.2557 -1.3961 20 6 7.3805 -3.8989 -0.7225 21 1 -0.4851 0.8400 0.0004 22 1 3.8751 -0.6804 0.8889 23 1 3.8746 -0.6800 -0.8911 24 1 3.6578 -3.1505 -0.8908 25 1 3.6586 -3.1502 0.8892 26 1 6.9044 -3.7146 1.9551 27 1 5.2783 -4.4386 1.9548 28 1 7.0094 -6.1383 2.4680 29 1 6.1972 -6.4998 0.9263 30 1 8.6544 -6.7585 0.7188 31 1 8.8757 -5.0688 1.2337 32 1 9.7165 -6.1090 -1.4345 33 1 7.2332 -3.5665 -1.7500 34 1 8.0454 -3.2050 -0.2082 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712783937.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:29 Heat of formation + Delta-G solvation = -150.147472 kcal Electronic energy + Delta-G solvation = -14451.466392 eV Core-core repulsion = 11961.205259 eV Total energy + Delta-G solvation = -2490.261133 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.41532 -38.40180 -36.10987 -35.16054 -32.65632 -31.07047 -29.93946 -26.66902 -23.47063 -23.23590 -22.55398 -20.89343 -19.19110 -18.32648 -17.22465 -16.61866 -16.38976 -16.22665 -15.49525 -15.17099 -14.78616 -14.66329 -14.38838 -13.82306 -13.52643 -13.19258 -13.11013 -12.62178 -12.25027 -12.13885 -12.01288 -11.81603 -11.78245 -11.54372 -11.44177 -11.31411 -10.84824 -10.78626 -10.34321 -8.34573 -6.40319 1.35298 1.36453 1.49983 2.33621 2.58893 3.00611 3.43017 3.67827 3.92108 3.96926 4.14515 4.16617 4.30319 4.35977 4.39628 4.44080 4.49366 4.60678 4.81817 4.95300 4.99531 5.08314 5.12679 5.16964 5.20028 5.27557 5.38936 5.42451 5.55249 6.17858 6.38555 6.65611 6.92134 7.25078 8.81486 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.056921 B = 0.005584 C = 0.005355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.795858 B = 5012.964812 C = 5227.636853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.013 3.987 3 Si 0.949 3.051 4 H -0.265 1.265 5 H -0.278 1.278 6 H -0.253 1.253 7 C -0.536 4.536 8 H 0.040 0.960 9 C -0.008 4.008 10 C 0.089 3.911 11 O -0.405 6.405 12 C 0.086 3.914 13 H 0.065 0.935 14 C -0.144 4.144 15 C -0.109 4.109 16 C -0.145 4.145 17 C 0.113 3.887 18 H 0.068 0.932 19 O -0.584 6.584 20 C -0.110 4.110 21 H 0.270 0.730 22 H 0.022 0.978 23 H 0.020 0.980 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.397 0.603 33 H 0.061 0.939 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.907 -12.933 1.129 22.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.772 3.228 4 H -0.190 1.190 5 H -0.203 1.203 6 H -0.177 1.177 7 C -0.574 4.574 8 H 0.058 0.942 9 C -0.045 4.045 10 C 0.013 3.987 11 O -0.325 6.325 12 C 0.028 3.972 13 H 0.083 0.917 14 C -0.182 4.182 15 C -0.147 4.147 16 C -0.183 4.183 17 C 0.055 3.945 18 H 0.086 0.914 19 O -0.393 6.393 20 C -0.148 4.148 21 H 0.079 0.921 22 H 0.040 0.960 23 H 0.039 0.961 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.102 0.898 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.080 0.920 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.705 -12.040 1.068 21.438 hybrid contribution -0.353 0.142 0.039 0.383 sum 17.352 -11.898 1.107 21.068 Atomic orbital electron populations 1.70031 1.08076 1.28440 1.51890 1.25886 0.95610 1.03278 0.93720 0.85673 0.79344 0.78395 0.79373 1.19010 1.20310 1.17705 1.21209 0.90916 0.93746 1.51545 0.94159 1.19430 0.94092 0.93830 0.97180 1.22322 0.78880 0.98224 0.99262 1.87864 1.20581 1.28850 1.95177 1.22106 0.94195 0.84513 0.96336 0.91699 1.22077 1.01521 0.98412 0.96146 1.21415 0.96200 0.95113 1.01948 1.22256 0.97984 1.02838 0.95234 1.21630 0.85170 0.95232 0.92514 0.91395 1.86475 1.34546 1.38904 1.79398 1.21458 0.94940 0.97702 1.00675 0.92144 0.95958 0.96137 0.93891 0.93738 0.91780 0.92152 0.89798 0.90805 0.88877 0.91704 0.75232 0.92021 0.91727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.40 13.96 21.45 0.30 -59.10 16 2 C 0.01 0.77 5.47 84.66 0.46 1.23 16 3 Si 0.95 45.47 27.47 68.60 1.88 47.36 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.25 -11.64 6.54 99.48 0.65 -10.99 16 7 C -0.54 -31.67 9.66 25.60 0.25 -31.43 16 8 H 0.04 2.56 7.99 -2.91 -0.02 2.54 16 9 C -0.01 -0.39 4.41 29.85 0.13 -0.26 16 10 C 0.09 3.79 5.69 71.98 0.41 4.20 16 11 O -0.40 -15.65 9.99 -148.98 -1.49 -17.14 16 12 C 0.09 2.50 2.61 30.60 0.08 2.58 16 13 H 0.06 1.78 7.79 -2.39 -0.02 1.76 16 14 C -0.14 -3.54 5.54 30.59 0.17 -3.37 16 15 C -0.11 -1.85 5.92 30.59 0.18 -1.67 16 16 C -0.15 -2.23 5.55 30.60 0.17 -2.06 16 17 C 0.11 2.16 3.47 30.60 0.11 2.27 16 18 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 19 O -0.58 -11.07 13.32 -148.98 -1.98 -13.05 16 20 C -0.11 -2.90 5.22 30.59 0.16 -2.74 16 21 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 22 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 23 H 0.02 1.02 7.57 -2.39 -0.02 1.00 16 24 H 0.04 1.79 8.09 -2.39 -0.02 1.77 16 25 H 0.04 1.84 7.87 -2.39 -0.02 1.82 16 26 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.06 1.59 7.87 -2.39 -0.02 1.57 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 31 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.40 3.45 9.08 -74.06 -0.67 2.78 16 33 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -69.04 275.92 1.16 -67.88 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.33 Total: 5.30 kcal Atomic # 6 Polarization: -33.36 SS G_CDS: 2.12 Total: -31.24 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: 0.30 Total: -59.10 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -3.47 Total: -30.19 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 1.88 Total: 47.36 kcal Total: -69.04 1.16 -67.88 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712783937.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.265 kcal (2) G-P(sol) polarization free energy of solvation -69.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds