Wall clock time and date at job start Mon Mar 30 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 C 1.52998 * 109.47178 * 120.00638 * 2 1 3 5 5 C 1.53002 * 109.46646 * 174.52209 * 4 2 1 6 6 H 1.09001 * 110.45819 * 57.01958 * 5 4 2 7 7 C 1.54477 * 110.51449 * 294.41411 * 5 4 2 8 8 O 1.44431 * 104.80098 * 265.33564 * 7 5 4 9 9 C 1.44423 * 105.27530 * 319.48680 * 8 7 5 10 10 C 1.54515 * 110.51019 * 179.62125 * 5 4 2 11 11 O 1.42896 * 110.51413 * 237.29273 * 10 5 4 12 12 C 1.50703 * 110.50968 * 0.02562 * 10 5 4 13 13 H 1.08000 * 120.00091 * 0.02562 * 12 10 5 14 14 C 1.37873 * 119.99858 * 179.97438 * 12 10 5 15 15 N 1.31508 * 120.00331 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99840 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47215 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46972 * 120.00258 * 16 14 12 19 19 H 1.48499 * 109.47389 * 240.00178 * 16 14 12 20 20 H 1.09000 * 109.47680 * 55.05036 * 1 2 3 21 21 H 1.08996 * 109.47451 * 175.05540 * 1 2 3 22 22 H 1.09005 * 109.47051 * 295.04720 * 1 2 3 23 23 H 1.09007 * 109.46464 * 240.00618 * 2 1 3 24 24 H 1.09007 * 109.47020 * 60.00959 * 3 2 1 25 25 H 1.09004 * 109.47294 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.47794 * 300.00522 * 3 2 1 27 27 H 1.09001 * 109.47279 * 294.52150 * 4 2 1 28 28 H 1.08996 * 109.47199 * 54.52368 * 4 2 1 29 29 H 1.08994 * 110.36979 * 24.16431 * 7 5 4 30 30 H 1.09000 * 110.37489 * 146.39330 * 7 5 4 31 31 H 1.08998 * 110.37298 * 159.34487 * 9 8 7 32 32 H 1.09000 * 110.37072 * 281.56717 * 9 8 7 33 33 H 0.96701 * 113.99889 * 180.02562 * 11 10 5 34 34 H 0.97003 * 120.00400 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5638 -0.8417 1.1821 6 1 4.0195 0.1431 1.0782 7 6 3.9835 -1.7584 0.0117 8 8 4.1431 -3.0652 0.6055 9 6 4.7886 -2.8297 1.8758 10 6 4.1061 -1.5593 2.4384 11 8 5.0572 -0.7348 3.1147 12 6 2.9757 -1.9319 3.3628 13 1 1.9577 -1.6884 3.0966 14 6 3.2410 -2.5844 4.5480 15 7 4.4805 -2.8813 4.8721 16 14 1.8400 -3.0456 5.6943 17 1 0.5513 -2.6028 5.1040 18 1 1.8179 -4.5186 5.8814 19 1 2.0368 -2.3826 7.0084 20 1 -0.3634 0.5887 -0.8423 21 1 -0.3634 -1.0238 -0.0886 22 1 -0.3633 0.4351 0.9311 23 1 1.8932 -0.5138 -0.8901 24 1 1.6767 1.9563 0.8901 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8898 27 1 1.7590 -0.1541 2.1365 28 1 1.5988 -1.7168 1.2994 29 1 3.2050 -1.7806 -0.7508 30 1 4.9253 -1.4176 -0.4184 31 1 4.6286 -3.6748 2.5453 32 1 5.8552 -2.6563 1.7330 33 1 5.4303 -1.1368 3.9112 34 1 4.6671 -3.3408 5.7058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716334712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:22 Heat of formation + Delta-G solvation = -112.861600 kcal Electronic energy + Delta-G solvation = -15598.175717 eV Core-core repulsion = 13109.531421 eV Total energy + Delta-G solvation = -2488.644296 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.99006 -35.77465 -34.82955 -32.12806 -30.73414 -27.67874 -26.81562 -25.38726 -24.66375 -21.79293 -19.58758 -18.85535 -16.82718 -15.64892 -15.39934 -14.89762 -14.14097 -14.01849 -13.64798 -13.48494 -12.77012 -12.29828 -12.18525 -11.93291 -11.78875 -11.38696 -11.22388 -11.07529 -10.85251 -10.70029 -10.46932 -10.28764 -9.94031 -9.70092 -9.60321 -8.99390 -8.94467 -8.50958 -8.02185 -6.22697 -4.28251 3.22196 3.30881 3.34842 4.31236 4.94093 5.10211 5.27034 5.35938 5.39845 5.80947 5.84843 5.88833 5.92389 6.07366 6.11635 6.13876 6.25759 6.38890 6.45938 6.53128 6.54922 6.63104 6.74874 6.86176 7.02274 7.15744 7.24899 7.38510 7.76581 7.92134 8.15610 8.73995 9.39010 9.50533 10.85161 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.012368 C = 0.010095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.546320 B = 2263.443437 C = 2772.996571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.145 4.145 4 C -0.086 4.086 5 C -0.108 4.108 6 H 0.073 0.927 7 C 0.048 3.952 8 O -0.384 6.384 9 C 0.033 3.967 10 C 0.230 3.770 11 O -0.589 6.589 12 C -0.528 4.528 13 H 0.079 0.921 14 C 0.064 3.936 15 N -0.904 5.904 16 Si 0.900 3.100 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.046 0.954 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.041 0.959 31 H 0.100 0.900 32 H 0.029 0.971 33 H 0.384 0.616 34 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.604 3.942 -6.549 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.125 4.125 3 C -0.203 4.203 4 C -0.123 4.123 5 C -0.127 4.127 6 H 0.091 0.909 7 C -0.029 4.029 8 O -0.303 6.303 9 C -0.044 4.044 10 C 0.190 3.810 11 O -0.399 6.399 12 C -0.566 4.566 13 H 0.097 0.903 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.728 3.272 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 H 0.065 0.935 21 H 0.071 0.929 22 H 0.072 0.928 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.097 0.903 30 H 0.059 0.941 31 H 0.118 0.882 32 H 0.048 0.952 33 H 0.235 0.765 34 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.714 4.060 -6.983 8.890 hybrid contribution -0.350 -0.552 1.275 1.433 sum -4.064 3.507 -5.708 7.836 Atomic orbital electron populations 1.21811 0.95952 1.01285 1.01070 1.21329 0.95140 0.96291 0.99712 1.21863 1.01337 0.96296 1.00771 1.21604 0.94486 1.00473 0.95768 1.22332 0.96159 0.98901 0.95286 0.90873 1.23379 0.98853 0.84730 0.95939 1.89002 1.81024 1.26220 1.34061 1.24264 0.93811 1.02811 0.83531 1.19956 0.86969 0.85153 0.88916 1.86106 1.61117 1.47823 1.44854 1.22018 0.94472 1.36676 1.03447 0.90274 1.25079 0.95999 0.94689 0.97938 1.69584 1.18343 1.42100 1.24501 0.86395 0.82264 0.78118 0.80417 1.19582 1.20902 1.20927 0.93529 0.92909 0.92847 0.91741 0.92864 0.92470 0.93759 0.91210 0.91155 0.90327 0.94064 0.88182 0.95236 0.76473 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 37.16 0.34 -1.62 16 2 C -0.11 -1.63 2.81 -90.62 -0.25 -1.89 16 3 C -0.15 -2.06 8.97 37.16 0.33 -1.73 16 4 C -0.09 -1.66 2.64 -26.73 -0.07 -1.73 16 5 C -0.11 -2.30 2.76 -89.05 -0.25 -2.54 16 6 H 0.07 1.53 6.38 -51.93 -0.33 1.20 16 7 C 0.05 0.96 7.01 37.93 0.27 1.22 16 8 O -0.38 -9.03 11.65 -35.23 -0.41 -9.44 16 9 C 0.03 0.82 6.56 38.10 0.25 1.07 16 10 C 0.23 5.77 1.08 -90.03 -0.10 5.67 16 11 O -0.59 -15.45 13.00 -35.23 -0.46 -15.91 16 12 C -0.53 -13.96 7.42 -34.44 -0.26 -14.21 16 13 H 0.08 2.04 4.80 -52.49 -0.25 1.79 16 14 C 0.06 1.68 5.04 -17.82 -0.09 1.59 16 15 N -0.90 -24.15 10.44 55.43 0.58 -23.57 16 16 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 17 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.06 0.96 6.29 -51.93 -0.33 0.63 16 24 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.06 0.84 6.54 -51.93 -0.34 0.50 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.07 1.44 7.15 -51.93 -0.37 1.07 16 28 H 0.07 1.47 7.20 -51.93 -0.37 1.09 16 29 H 0.08 1.37 6.12 -51.93 -0.32 1.06 16 30 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.10 2.69 6.80 -51.93 -0.35 2.33 16 32 H 0.03 0.72 8.09 -51.93 -0.42 0.30 16 33 H 0.38 10.21 7.02 45.56 0.32 10.53 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 262.98 15.07 3.96 3.96 Total: -1.00 -27.32 262.98 -5.61 -32.92 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -4.44 Total: 10.49 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 0.18 Total: -14.17 kcal Atomic # 7 Polarization: -24.15 SS G_CDS: 0.58 Total: -23.57 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.87 Total: -25.34 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.32 -5.61 -32.92 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716334712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.937 kcal (2) G-P(sol) polarization free energy of solvation -27.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds