Wall clock time and date at job start Mon Mar 30 2020 02:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46974 * 2 1 4 4 C 1.52998 * 109.47178 * 120.00638 * 2 1 3 5 5 C 1.53002 * 109.46646 * 174.52209 * 4 2 1 6 6 H 1.09001 * 110.45819 * 57.01958 * 5 4 2 7 7 C 1.54477 * 110.51449 * 294.41411 * 5 4 2 8 8 O 1.44431 * 104.80098 * 265.33564 * 7 5 4 9 9 C 1.44423 * 105.27530 * 319.48680 * 8 7 5 10 10 C 1.54515 * 110.51019 * 179.62125 * 5 4 2 11 11 O 1.42896 * 110.51413 * 237.29273 * 10 5 4 12 12 C 1.50703 * 110.50968 * 0.02562 * 10 5 4 13 13 H 1.08000 * 120.00091 * 0.02562 * 12 10 5 14 14 C 1.37873 * 119.99858 * 179.97438 * 12 10 5 15 15 N 1.31508 * 120.00331 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 119.99840 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47215 * 0.02562 * 16 14 12 18 18 H 1.48504 * 109.46972 * 120.00258 * 16 14 12 19 19 H 1.48499 * 109.47389 * 240.00178 * 16 14 12 20 20 H 1.09000 * 109.47680 * 55.05036 * 1 2 3 21 21 H 1.08996 * 109.47451 * 175.05540 * 1 2 3 22 22 H 1.09005 * 109.47051 * 295.04720 * 1 2 3 23 23 H 1.09007 * 109.46464 * 240.00618 * 2 1 3 24 24 H 1.09007 * 109.47020 * 60.00959 * 3 2 1 25 25 H 1.09004 * 109.47294 * 180.02562 * 3 2 1 26 26 H 1.08992 * 109.47794 * 300.00522 * 3 2 1 27 27 H 1.09001 * 109.47279 * 294.52150 * 4 2 1 28 28 H 1.08996 * 109.47199 * 54.52368 * 4 2 1 29 29 H 1.08994 * 110.36979 * 24.16431 * 7 5 4 30 30 H 1.09000 * 110.37489 * 146.39330 * 7 5 4 31 31 H 1.08998 * 110.37298 * 159.34487 * 9 8 7 32 32 H 1.09000 * 110.37072 * 281.56717 * 9 8 7 33 33 H 0.96701 * 113.99889 * 180.02562 * 11 10 5 34 34 H 0.97003 * 120.00400 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 3.5638 -0.8417 1.1821 6 1 4.0195 0.1431 1.0782 7 6 3.9835 -1.7584 0.0117 8 8 4.1431 -3.0652 0.6055 9 6 4.7886 -2.8297 1.8758 10 6 4.1061 -1.5593 2.4384 11 8 5.0572 -0.7348 3.1147 12 6 2.9757 -1.9319 3.3628 13 1 1.9577 -1.6884 3.0966 14 6 3.2410 -2.5844 4.5480 15 7 4.4805 -2.8813 4.8721 16 14 1.8400 -3.0456 5.6943 17 1 0.5513 -2.6028 5.1040 18 1 1.8179 -4.5186 5.8814 19 1 2.0368 -2.3826 7.0084 20 1 -0.3634 0.5887 -0.8423 21 1 -0.3634 -1.0238 -0.0886 22 1 -0.3633 0.4351 0.9311 23 1 1.8932 -0.5138 -0.8901 24 1 1.6767 1.9563 0.8901 25 1 3.1300 1.4426 -0.0005 26 1 1.6766 1.9564 -0.8898 27 1 1.7590 -0.1541 2.1365 28 1 1.5988 -1.7168 1.2994 29 1 3.2050 -1.7806 -0.7508 30 1 4.9253 -1.4176 -0.4184 31 1 4.6286 -3.6748 2.5453 32 1 5.8552 -2.6563 1.7330 33 1 5.4303 -1.1368 3.9112 34 1 4.6671 -3.3408 5.7058 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716334712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:22 Heat of formation + Delta-G solvation = -131.377267 kcal Electronic energy + Delta-G solvation = -15598.978616 eV Core-core repulsion = 13109.531421 eV Total energy + Delta-G solvation = -2489.447196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.76741 -37.17655 -36.79862 -34.16755 -32.35692 -29.55039 -27.94824 -27.10913 -26.47110 -23.48905 -21.24027 -20.45638 -18.73242 -17.52286 -17.24798 -16.50765 -15.94127 -15.66040 -15.28703 -15.02973 -14.18702 -14.06666 -13.91541 -13.53844 -13.16356 -13.02627 -12.98079 -12.65602 -12.55671 -12.28921 -12.07954 -11.79923 -11.47482 -11.42229 -11.12963 -10.82865 -10.76118 -10.44346 -10.01436 -8.23146 -6.34857 1.38672 1.42194 1.52380 2.38710 2.98766 3.29122 3.77346 4.01878 4.13669 4.24545 4.31801 4.38605 4.47929 4.54079 4.73483 4.81910 4.87321 4.97284 5.03505 5.09067 5.13963 5.18601 5.26187 5.35270 5.40216 5.50487 5.64134 5.66503 5.75641 6.03006 6.20124 6.70925 7.33947 7.42715 8.83837 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.027032 B = 0.012368 C = 0.010095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.546320 B = 2263.443437 C = 2772.996571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C -0.144 4.144 4 C -0.077 4.077 5 C -0.106 4.106 6 H 0.076 0.924 7 C 0.047 3.953 8 O -0.397 6.397 9 C 0.041 3.959 10 C 0.212 3.788 11 O -0.596 6.596 12 C -0.546 4.546 13 H 0.080 0.920 14 C 0.021 3.979 15 N -0.922 5.922 16 Si 0.958 3.042 17 H -0.267 1.267 18 H -0.282 1.282 19 H -0.280 1.280 20 H 0.071 0.929 21 H 0.051 0.949 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.046 0.954 25 H 0.048 0.952 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.109 0.891 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.030 0.970 33 H 0.378 0.622 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 4.599 -7.763 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 C -0.201 4.201 4 C -0.114 4.114 5 C -0.125 4.125 6 H 0.094 0.906 7 C -0.029 4.029 8 O -0.316 6.316 9 C -0.036 4.036 10 C 0.172 3.828 11 O -0.405 6.405 12 C -0.584 4.584 13 H 0.098 0.902 14 C -0.178 4.178 15 N -0.564 5.564 16 Si 0.784 3.216 17 H -0.192 1.192 18 H -0.208 1.208 19 H -0.206 1.206 20 H 0.089 0.911 21 H 0.070 0.930 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.065 0.935 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.127 0.873 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.048 0.952 33 H 0.228 0.772 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.850 4.725 -8.211 10.643 hybrid contribution 0.030 -0.746 1.630 1.793 sum -4.820 3.980 -6.581 9.076 Atomic orbital electron populations 1.21794 0.94485 1.01737 1.01914 1.21279 0.96369 0.96580 0.97684 1.21845 1.00823 0.95600 1.01811 1.21457 0.93094 0.99612 0.97287 1.22353 0.97333 0.98868 0.93898 0.90563 1.23616 1.00787 0.82721 0.95766 1.88971 1.80917 1.28321 1.33388 1.24000 0.93903 1.01761 0.83935 1.20248 0.86559 0.85843 0.90118 1.86102 1.61481 1.48263 1.44683 1.22292 0.94970 1.37002 1.04145 0.90239 1.25774 0.98066 0.94709 0.99275 1.69664 1.19600 1.42278 1.24815 0.85500 0.79847 0.77674 0.78600 1.19174 1.20772 1.20605 0.91052 0.93011 0.93366 0.90589 0.93468 0.93254 0.91115 0.93232 0.93137 0.87335 0.92356 0.90823 0.95204 0.77157 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.19 71.98 0.66 -2.81 16 2 C -0.10 -2.83 2.81 -10.79 -0.03 -2.86 16 3 C -0.14 -3.68 8.97 71.98 0.65 -3.03 16 4 C -0.08 -2.90 2.64 30.59 0.08 -2.82 16 5 C -0.11 -4.40 2.76 -9.78 -0.03 -4.43 16 6 H 0.08 3.11 6.38 -2.39 -0.02 3.09 16 7 C 0.05 1.79 7.01 72.48 0.51 2.30 16 8 O -0.40 -18.33 11.65 -148.98 -1.74 -20.07 16 9 C 0.04 2.08 6.56 72.60 0.48 2.55 16 10 C 0.21 10.69 1.08 -10.41 -0.01 10.68 16 11 O -0.60 -31.64 13.00 -148.98 -1.94 -33.57 16 12 C -0.55 -29.12 7.42 25.60 0.19 -28.93 16 13 H 0.08 4.14 4.80 -2.91 -0.01 4.13 16 14 C 0.02 1.10 5.04 84.65 0.43 1.52 16 15 N -0.92 -49.92 10.44 21.44 0.22 -49.69 16 16 Si 0.96 42.61 29.54 68.60 2.03 44.64 16 17 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 18 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 21 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 22 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 23 H 0.08 1.98 6.29 -2.38 -0.01 1.96 16 24 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 25 H 0.05 1.33 6.54 -2.39 -0.02 1.32 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.05 2.04 7.15 -2.39 -0.02 2.02 16 28 H 0.05 2.08 7.20 -2.39 -0.02 2.06 16 29 H 0.11 3.44 6.12 -2.39 -0.01 3.43 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.07 4.05 6.80 -2.39 -0.02 4.04 16 32 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16 33 H 0.38 20.57 7.02 -74.06 -0.52 20.05 16 34 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 Total: -1.00 -57.65 262.98 2.07 -55.58 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.57 Total: 30.94 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 2.92 Total: -27.83 kcal Atomic # 7 Polarization: -49.92 SS G_CDS: 0.22 Total: -49.69 kcal Atomic # 8 Polarization: -49.97 SS G_CDS: -3.67 Total: -53.64 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -57.65 2.07 -55.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716334712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.796 kcal (2) G-P(sol) polarization free energy of solvation -57.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds