Wall clock time and date at job start Mon Mar 30 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53009 * 109.46714 * 2 1 4 4 C 1.52999 * 109.47304 * 119.99737 * 2 1 3 5 5 C 1.53006 * 109.46626 * 65.00546 * 4 2 1 6 6 H 1.08995 * 110.45574 * 305.69735 * 5 4 2 7 7 C 1.54480 * 110.50987 * 68.30577 * 5 4 2 8 8 O 1.44782 * 104.63016 * 94.70171 * 7 5 4 9 9 C 1.44426 * 105.29670 * 40.53105 * 8 7 5 10 10 C 1.54480 * 104.80402 * 319.45452 * 9 8 7 11 11 O 1.42901 * 110.51028 * 142.61846 * 10 9 8 12 12 C 1.50691 * 110.62872 * 265.27312 * 10 9 8 13 13 H 1.08004 * 119.99728 * 114.70829 * 12 10 9 14 14 C 1.37878 * 120.00547 * 294.70989 * 12 10 9 15 15 N 1.31519 * 119.99264 * 0.02562 * 14 12 10 16 16 Si 1.86790 * 120.00361 * 179.97438 * 14 12 10 17 17 H 1.48505 * 109.46924 * 90.00266 * 16 14 12 18 18 H 1.48502 * 109.47440 * 209.99814 * 16 14 12 19 19 H 1.48498 * 109.47307 * 330.00121 * 16 14 12 20 20 H 1.08998 * 109.47381 * 60.00361 * 1 2 3 21 21 H 1.09006 * 109.46455 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47430 * 299.99351 * 1 2 3 23 23 H 1.08993 * 109.47092 * 240.00621 * 2 1 3 24 24 H 1.08999 * 109.47112 * 179.97438 * 3 2 1 25 25 H 1.08998 * 109.46851 * 300.00487 * 3 2 1 26 26 H 1.09001 * 109.46642 * 60.00167 * 3 2 1 27 27 H 1.08993 * 109.47839 * 305.00615 * 4 2 1 28 28 H 1.09000 * 109.47160 * 185.00177 * 4 2 1 29 29 H 1.09004 * 110.36630 * 213.49672 * 7 5 4 30 30 H 1.09004 * 110.37439 * 335.82942 * 7 5 4 31 31 H 1.08992 * 110.37829 * 200.62054 * 9 8 7 32 32 H 1.09005 * 110.46415 * 78.32865 * 9 8 7 33 33 H 0.96698 * 113.99958 * 65.36298 * 11 10 9 34 34 H 0.97006 * 119.99551 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6354 -2.1955 1.1879 6 1 0.5595 -2.2893 1.0403 7 6 2.4019 -2.9206 0.0596 8 8 3.5506 -3.5079 0.7167 9 6 3.0526 -4.0138 1.9745 10 6 2.0716 -2.9305 2.4750 11 8 0.9442 -3.5328 3.1141 12 6 2.7652 -1.9802 3.4166 13 1 2.8930 -0.9439 3.1407 14 6 3.2368 -2.4337 4.6303 15 7 3.0816 -3.6958 4.9660 16 14 4.0972 -1.2559 5.7971 17 1 3.0957 -0.6336 6.7000 18 1 5.0963 -2.0007 6.6048 19 1 4.7836 -0.1969 5.0145 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3632 -1.0278 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 3.1299 1.4427 0.0005 25 1 1.6765 1.9564 -0.8899 26 1 1.6766 1.9563 0.8900 27 1 1.6055 -0.2618 2.1370 28 1 3.1264 -0.6442 1.2951 29 1 1.7789 -3.6974 -0.3838 30 1 2.7205 -2.2082 -0.7014 31 1 3.8710 -4.1411 2.6831 32 1 2.5304 -4.9589 1.8253 33 1 1.1608 -4.0080 3.9279 34 1 3.4130 -4.0148 5.8200 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716334714.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:24 Heat of formation + Delta-G solvation = -112.843460 kcal Electronic energy + Delta-G solvation = -15597.469696 eV Core-core repulsion = 13108.826186 eV Total energy + Delta-G solvation = -2488.643509 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.97407 -35.77209 -34.81485 -32.12279 -30.73196 -27.67625 -26.81942 -25.39188 -24.65776 -21.77496 -19.57769 -18.87356 -16.80967 -15.65375 -15.39531 -14.87753 -14.14560 -14.02784 -13.65275 -13.47399 -12.76189 -12.30484 -12.17976 -11.92265 -11.77679 -11.36692 -11.21904 -11.06808 -10.84948 -10.69531 -10.49493 -10.30197 -9.93291 -9.70369 -9.60701 -8.99210 -8.94290 -8.50178 -8.02703 -6.22431 -4.28052 3.23372 3.30585 3.34093 4.31422 4.93730 5.10563 5.26828 5.36151 5.39660 5.80217 5.85278 5.89182 5.92348 6.07513 6.12017 6.14261 6.25786 6.38752 6.46427 6.53712 6.54759 6.63357 6.74686 6.86428 7.02385 7.15891 7.24875 7.38935 7.76411 7.92043 8.15899 8.73831 9.39125 9.50854 10.85367 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.026845 B = 0.012410 C = 0.010116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.789733 B = 2255.621411 C = 2767.159733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.144 4.144 4 C -0.087 4.087 5 C -0.108 4.108 6 H 0.074 0.926 7 C 0.048 3.952 8 O -0.385 6.385 9 C 0.033 3.967 10 C 0.230 3.770 11 O -0.590 6.590 12 C -0.529 4.529 13 H 0.079 0.921 14 C 0.064 3.936 15 N -0.904 5.904 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 H 0.043 0.957 21 H 0.057 0.943 22 H 0.052 0.948 23 H 0.063 0.937 24 H 0.052 0.948 25 H 0.045 0.955 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.030 0.970 33 H 0.384 0.616 34 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.264 4.633 -6.659 8.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.124 4.124 3 C -0.201 4.201 4 C -0.124 4.124 5 C -0.127 4.127 6 H 0.092 0.908 7 C -0.029 4.029 8 O -0.304 6.304 9 C -0.044 4.044 10 C 0.190 3.810 11 O -0.400 6.400 12 C -0.567 4.567 13 H 0.097 0.903 14 C -0.137 4.137 15 N -0.545 5.545 16 Si 0.728 3.272 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 H 0.062 0.938 21 H 0.076 0.924 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.071 0.929 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.119 0.881 32 H 0.048 0.952 33 H 0.235 0.765 34 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.312 4.765 -7.096 8.854 hybrid contribution 0.576 0.176 1.296 1.429 sum -1.736 4.940 -5.800 7.814 Atomic orbital electron populations 1.21865 0.95877 1.01759 1.00776 1.21312 0.95553 0.95889 0.99657 1.21812 1.00878 0.96485 1.00942 1.21614 1.01134 0.93747 0.95891 1.22338 0.99516 0.95396 0.95442 0.90815 1.23430 0.88356 0.95613 0.95487 1.89057 1.30909 1.77235 1.33191 1.24199 1.00353 0.95775 0.84046 1.19903 0.82924 0.88988 0.89179 1.86105 1.36085 1.73759 1.44009 1.21982 1.36231 0.97152 1.01308 0.90342 1.25080 0.95232 0.95287 0.98099 1.69582 1.47724 1.14106 1.23133 0.86446 0.79265 0.80863 0.80613 1.20544 1.21127 1.19698 0.93765 0.92436 0.92844 0.91829 0.92867 0.93547 0.92873 0.90999 0.91333 0.93996 0.90349 0.88144 0.95220 0.76481 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 8.97 37.16 0.33 -1.74 16 2 C -0.11 -1.62 2.82 -90.61 -0.26 -1.88 16 3 C -0.14 -1.96 9.19 37.16 0.34 -1.61 16 4 C -0.09 -1.67 2.61 -26.73 -0.07 -1.74 16 5 C -0.11 -2.30 2.77 -89.05 -0.25 -2.55 16 6 H 0.07 1.54 6.25 -51.93 -0.32 1.22 16 7 C 0.05 0.96 7.04 37.93 0.27 1.23 16 8 O -0.38 -9.06 11.66 -35.23 -0.41 -9.47 16 9 C 0.03 0.83 6.55 37.93 0.25 1.08 16 10 C 0.23 5.77 1.08 -90.21 -0.10 5.67 16 11 O -0.59 -15.47 12.98 -35.23 -0.46 -15.93 16 12 C -0.53 -13.98 7.42 -34.44 -0.26 -14.23 16 13 H 0.08 2.02 4.79 -52.48 -0.25 1.77 16 14 C 0.06 1.69 5.04 -17.82 -0.09 1.60 16 15 N -0.90 -24.16 10.42 55.43 0.58 -23.59 16 16 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 18 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 20 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 21 H 0.06 0.85 6.47 -51.93 -0.34 0.52 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.06 0.94 6.48 -51.93 -0.34 0.60 16 24 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.07 1.49 6.94 -51.93 -0.36 1.13 16 28 H 0.07 1.42 7.39 -51.93 -0.38 1.04 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 1.37 6.32 -51.93 -0.33 1.04 16 31 H 0.10 2.70 6.78 -51.93 -0.35 2.34 16 32 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.38 10.21 7.02 45.56 0.32 10.53 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 263.11 15.07 3.96 3.96 Total: -1.00 -27.32 263.11 -5.62 -32.94 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -4.44 Total: 10.55 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 0.18 Total: -14.18 kcal Atomic # 7 Polarization: -24.16 SS G_CDS: 0.58 Total: -23.59 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.87 Total: -25.39 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -27.32 -5.62 -32.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716334714.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.906 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds