Wall clock time and date at job start Mon Mar 30 2020 02:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.53006 * 109.46759 * 240.00455 * 2 1 3 5 5 C 1.52993 * 109.46879 * 185.86968 * 4 2 1 6 6 H 1.08999 * 110.46089 * 308.17117 * 5 4 2 7 7 C 1.54481 * 110.51366 * 70.78164 * 5 4 2 8 8 O 1.44784 * 104.62639 * 94.70170 * 7 5 4 9 9 C 1.44419 * 105.29829 * 40.53716 * 8 7 5 10 10 C 1.54485 * 104.80236 * 319.45368 * 9 8 7 11 11 O 1.42898 * 110.62457 * 265.27345 * 10 9 8 12 12 C 1.50697 * 110.51130 * 142.62686 * 10 9 8 13 13 H 1.08000 * 119.99839 * 240.15861 * 12 10 9 14 14 C 1.37871 * 120.00413 * 60.15259 * 12 10 9 15 15 N 1.31512 * 120.00193 * 4.93232 * 14 12 10 16 16 Si 1.86803 * 120.00318 * 184.93348 * 14 12 10 17 17 H 1.48491 * 109.47352 * 94.99878 * 16 14 12 18 18 H 1.48503 * 109.47178 * 214.99840 * 16 14 12 19 19 H 1.48500 * 109.47047 * 334.99761 * 16 14 12 20 20 H 1.08996 * 109.47560 * 175.03051 * 1 2 3 21 21 H 1.09000 * 109.47644 * 55.02469 * 1 2 3 22 22 H 1.09006 * 109.46792 * 295.03310 * 1 2 3 23 23 H 1.08994 * 109.47223 * 120.00259 * 2 1 3 24 24 H 1.08998 * 109.46657 * 59.99996 * 3 2 1 25 25 H 1.08993 * 109.47245 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46999 * 300.00719 * 3 2 1 27 27 H 1.09000 * 109.46835 * 305.87063 * 4 2 1 28 28 H 1.09001 * 109.47163 * 65.86721 * 4 2 1 29 29 H 1.08999 * 110.36968 * 213.49681 * 7 5 4 30 30 H 1.08999 * 110.36947 * 335.83470 * 7 5 4 31 31 H 1.09004 * 110.37538 * 200.62354 * 9 8 7 32 32 H 1.09004 * 110.46853 * 78.32880 * 9 8 7 33 33 H 0.96698 * 114.00572 * 294.71019 * 11 10 9 34 34 H 0.97003 * 120.00439 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5627 -0.8502 -1.1778 6 1 4.0184 0.1197 -0.9786 7 6 3.9690 -1.8723 -0.0931 8 8 4.1338 -3.1197 -0.8094 9 6 4.7932 -2.7656 -2.0445 10 6 4.1174 -1.4495 -2.4895 11 8 3.0550 -1.7146 -3.4076 12 6 5.1289 -0.5197 -3.1087 13 1 5.3064 0.4525 -2.6731 14 6 5.8278 -0.9101 -4.2312 15 7 5.5439 -2.0521 -4.8185 16 14 7.1780 0.1829 -4.9179 17 1 8.4912 -0.2562 -4.3814 18 1 7.1902 0.0829 -6.3995 19 1 6.9260 1.5909 -4.5188 20 1 -0.3634 -1.0237 -0.0890 21 1 -0.3634 0.5891 -0.8420 22 1 -0.3633 0.4349 0.9312 23 1 1.8933 -0.5138 0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.5932 -1.7140 -1.3035 28 1 1.7649 -0.1502 -2.1362 29 1 4.9076 -1.5757 0.3752 30 1 3.1825 -1.9635 0.6559 31 1 4.6396 -3.5429 -2.7931 32 1 5.8584 -2.6071 -1.8761 33 1 3.3469 -2.0921 -4.2486 34 1 6.0353 -2.3266 -5.6085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716334716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:25 Heat of formation + Delta-G solvation = -121.185066 kcal Electronic energy + Delta-G solvation = -15497.130834 eV Core-core repulsion = 13008.125605 eV Total energy + Delta-G solvation = -2489.005229 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.90057 -35.76932 -34.73044 -32.17447 -30.60021 -27.83225 -26.84008 -25.42793 -24.49184 -21.77406 -19.58226 -18.70254 -17.14011 -15.42644 -15.25438 -14.95857 -14.26699 -14.14568 -13.76440 -13.35398 -12.81112 -12.26780 -12.05429 -11.92676 -11.69304 -11.40514 -11.17205 -11.00369 -10.73619 -10.70113 -10.65577 -10.37738 -10.25350 -9.82976 -9.54884 -9.20375 -8.77870 -8.53827 -8.00712 -6.27755 -4.34777 3.19084 3.27154 3.30471 4.26139 5.00599 5.04115 5.26612 5.34552 5.37745 5.74349 5.82806 5.90629 5.98855 6.06130 6.10531 6.13317 6.24584 6.38351 6.39138 6.53620 6.56751 6.68890 6.71175 6.88113 7.05775 7.19587 7.21247 7.48173 7.75088 7.76141 8.14762 8.69479 9.33756 9.51973 10.80051 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034389 B = 0.010166 C = 0.009121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.013649 B = 2753.567381 C = 3069.248142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 C -0.146 4.146 4 C -0.084 4.084 5 C -0.108 4.108 6 H 0.079 0.921 7 C 0.050 3.950 8 O -0.398 6.398 9 C 0.039 3.961 10 C 0.233 3.767 11 O -0.581 6.581 12 C -0.536 4.536 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.897 5.897 16 Si 0.900 3.100 17 H -0.279 1.279 18 H -0.284 1.284 19 H -0.272 1.272 20 H 0.052 0.948 21 H 0.052 0.948 22 H 0.045 0.955 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.045 0.955 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.379 0.621 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.343 2.991 6.531 8.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.203 4.203 4 C -0.121 4.121 5 C -0.126 4.126 6 H 0.098 0.902 7 C -0.027 4.027 8 O -0.317 6.317 9 C -0.037 4.037 10 C 0.193 3.807 11 O -0.390 6.390 12 C -0.574 4.574 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.537 5.537 16 Si 0.728 3.272 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.064 0.936 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.229 0.771 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.718 2.907 6.929 8.872 hybrid contribution 1.363 0.495 -1.015 1.770 sum -3.355 3.402 5.914 7.603 Atomic orbital electron populations 1.21815 0.95984 1.01436 1.00841 1.21264 0.95082 0.96375 0.99470 1.21866 1.01486 0.96163 1.00798 1.21262 0.94622 1.00123 0.96110 1.22582 0.96095 0.98672 0.95299 0.90245 1.23431 0.99008 0.85336 0.94917 1.89023 1.80559 1.28578 1.33557 1.24186 0.95738 0.99628 0.84185 1.19835 0.84484 0.90263 0.86124 1.86143 1.36303 1.86197 1.30319 1.21697 1.21102 1.02490 1.12124 0.91886 1.25058 0.96973 0.95197 0.96141 1.69660 1.41584 1.21510 1.20933 0.86436 0.81765 0.80837 0.78172 1.20518 1.21004 1.19702 0.92910 0.92911 0.93544 0.91861 0.93723 0.92306 0.92829 0.92148 0.91339 0.93639 0.90581 0.89727 0.93078 0.77088 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.19 37.16 0.34 -1.57 16 2 C -0.10 -1.58 2.84 -90.62 -0.26 -1.83 16 3 C -0.15 -2.09 8.98 37.16 0.33 -1.76 16 4 C -0.08 -1.60 3.17 -26.73 -0.08 -1.69 16 5 C -0.11 -2.29 2.63 -89.06 -0.23 -2.52 16 6 H 0.08 1.66 5.66 -51.93 -0.29 1.36 16 7 C 0.05 1.00 7.03 37.93 0.27 1.27 16 8 O -0.40 -9.28 11.66 -35.23 -0.41 -9.69 16 9 C 0.04 0.97 5.99 37.94 0.23 1.20 16 10 C 0.23 5.81 1.05 -90.20 -0.09 5.71 16 11 O -0.58 -15.01 11.31 -35.23 -0.40 -15.41 16 12 C -0.54 -14.23 8.14 -34.44 -0.28 -14.51 16 13 H 0.06 1.66 7.40 -52.49 -0.39 1.27 16 14 C 0.07 1.80 5.23 -17.82 -0.09 1.71 16 15 N -0.90 -23.82 10.89 55.43 0.60 -23.22 16 16 Si 0.90 20.49 29.54 -169.99 -5.02 15.46 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 20 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 21 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 22 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.06 0.93 6.64 -51.93 -0.35 0.58 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.88 6.45 -51.93 -0.34 0.55 16 26 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.06 1.23 8.08 -51.93 -0.42 0.82 16 28 H 0.07 1.43 7.67 -51.93 -0.40 1.03 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.33 6.50 -51.93 -0.34 0.99 16 31 H 0.08 2.19 7.94 -51.93 -0.41 1.77 16 32 H 0.05 1.30 7.86 -51.93 -0.41 0.89 16 33 H 0.38 10.01 7.26 45.56 0.33 10.34 16 34 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 267.61 15.07 4.03 4.03 Total: -1.00 -27.14 267.61 -5.75 -32.89 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -4.68 Total: 9.94 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 0.13 Total: -14.00 kcal Atomic # 7 Polarization: -23.82 SS G_CDS: 0.60 Total: -23.22 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: -0.81 Total: -25.10 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.14 -5.75 -32.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716334716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.297 kcal (2) G-P(sol) polarization free energy of solvation -27.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds