Wall clock time and date at job start Mon Mar 30 2020 02:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47253 * 2 1 4 4 C 1.53006 * 109.46759 * 240.00455 * 2 1 3 5 5 C 1.52993 * 109.46879 * 185.86968 * 4 2 1 6 6 H 1.08999 * 110.46089 * 308.17117 * 5 4 2 7 7 C 1.54481 * 110.51366 * 70.78164 * 5 4 2 8 8 O 1.44784 * 104.62639 * 94.70170 * 7 5 4 9 9 C 1.44419 * 105.29829 * 40.53716 * 8 7 5 10 10 C 1.54485 * 104.80236 * 319.45368 * 9 8 7 11 11 O 1.42898 * 110.62457 * 265.27345 * 10 9 8 12 12 C 1.50697 * 110.51130 * 142.62686 * 10 9 8 13 13 H 1.08000 * 119.99839 * 240.15861 * 12 10 9 14 14 C 1.37871 * 120.00413 * 60.15259 * 12 10 9 15 15 N 1.31512 * 120.00193 * 4.93232 * 14 12 10 16 16 Si 1.86803 * 120.00318 * 184.93348 * 14 12 10 17 17 H 1.48491 * 109.47352 * 94.99878 * 16 14 12 18 18 H 1.48503 * 109.47178 * 214.99840 * 16 14 12 19 19 H 1.48500 * 109.47047 * 334.99761 * 16 14 12 20 20 H 1.08996 * 109.47560 * 175.03051 * 1 2 3 21 21 H 1.09000 * 109.47644 * 55.02469 * 1 2 3 22 22 H 1.09006 * 109.46792 * 295.03310 * 1 2 3 23 23 H 1.08994 * 109.47223 * 120.00259 * 2 1 3 24 24 H 1.08998 * 109.46657 * 59.99996 * 3 2 1 25 25 H 1.08993 * 109.47245 * 180.02562 * 3 2 1 26 26 H 1.08998 * 109.46999 * 300.00719 * 3 2 1 27 27 H 1.09000 * 109.46835 * 305.87063 * 4 2 1 28 28 H 1.09001 * 109.47163 * 65.86721 * 4 2 1 29 29 H 1.08999 * 110.36968 * 213.49681 * 7 5 4 30 30 H 1.08999 * 110.36947 * 335.83470 * 7 5 4 31 31 H 1.09004 * 110.37538 * 200.62354 * 9 8 7 32 32 H 1.09004 * 110.46853 * 78.32880 * 9 8 7 33 33 H 0.96698 * 114.00572 * 294.71019 * 11 10 9 34 34 H 0.97003 * 120.00439 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5627 -0.8502 -1.1778 6 1 4.0184 0.1197 -0.9786 7 6 3.9690 -1.8723 -0.0931 8 8 4.1338 -3.1197 -0.8094 9 6 4.7932 -2.7656 -2.0445 10 6 4.1174 -1.4495 -2.4895 11 8 3.0550 -1.7146 -3.4076 12 6 5.1289 -0.5197 -3.1087 13 1 5.3064 0.4525 -2.6731 14 6 5.8278 -0.9101 -4.2312 15 7 5.5439 -2.0521 -4.8185 16 14 7.1780 0.1829 -4.9179 17 1 8.4912 -0.2562 -4.3814 18 1 7.1902 0.0829 -6.3995 19 1 6.9260 1.5909 -4.5188 20 1 -0.3634 -1.0237 -0.0890 21 1 -0.3634 0.5891 -0.8420 22 1 -0.3633 0.4349 0.9312 23 1 1.8933 -0.5138 0.8899 24 1 1.6767 1.9563 0.8900 25 1 3.1300 1.4425 -0.0005 26 1 1.6766 1.9563 -0.8899 27 1 1.5932 -1.7140 -1.3035 28 1 1.7649 -0.1502 -2.1362 29 1 4.9076 -1.5757 0.3752 30 1 3.1825 -1.9635 0.6559 31 1 4.6396 -3.5429 -2.7931 32 1 5.8584 -2.6071 -1.8761 33 1 3.3469 -2.0921 -4.2486 34 1 6.0353 -2.3266 -5.6085 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716334716.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:25 Heat of formation + Delta-G solvation = -139.151410 kcal Electronic energy + Delta-G solvation = -15497.909913 eV Core-core repulsion = 13008.125605 eV Total energy + Delta-G solvation = -2489.784308 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.68693 -37.15416 -36.69243 -34.20899 -32.24221 -29.72789 -27.94382 -27.12753 -26.33845 -23.47543 -21.21732 -20.26273 -19.09627 -17.19535 -17.15005 -16.76099 -16.05248 -15.71832 -15.32233 -14.81355 -14.30189 -14.02629 -13.75959 -13.48491 -13.23887 -13.00983 -12.80358 -12.63765 -12.56939 -12.30708 -12.20439 -11.94882 -11.82509 -11.30463 -11.17044 -10.90322 -10.69824 -10.46433 -10.00011 -8.27546 -6.42424 1.38869 1.41491 1.51183 2.35688 2.98587 3.27931 3.88425 3.91910 4.11346 4.18284 4.28299 4.33631 4.50396 4.66611 4.74511 4.84139 4.86786 4.94501 5.00421 5.06172 5.10943 5.20497 5.25064 5.32996 5.44812 5.52022 5.62841 5.65919 5.77471 5.90104 6.16865 6.66100 7.29056 7.43765 8.78999 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034389 B = 0.010166 C = 0.009121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.013649 B = 2753.567381 C = 3069.248142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.144 4.144 4 C -0.074 4.074 5 C -0.107 4.107 6 H 0.082 0.918 7 C 0.049 3.951 8 O -0.408 6.408 9 C 0.050 3.950 10 C 0.217 3.783 11 O -0.586 6.586 12 C -0.558 4.558 13 H 0.059 0.941 14 C 0.027 3.973 15 N -0.915 5.915 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.281 1.281 19 H -0.270 1.270 20 H 0.050 0.950 21 H 0.049 0.951 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.071 0.929 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.040 0.960 33 H 0.372 0.628 34 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.481 4.007 7.841 9.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 C -0.202 4.202 4 C -0.112 4.112 5 C -0.125 4.125 6 H 0.100 0.900 7 C -0.027 4.027 8 O -0.328 6.328 9 C -0.027 4.027 10 C 0.177 3.823 11 O -0.394 6.394 12 C -0.596 4.596 13 H 0.077 0.923 14 C -0.173 4.173 15 N -0.554 5.554 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.207 1.207 19 H -0.194 1.194 20 H 0.069 0.931 21 H 0.068 0.932 22 H 0.089 0.911 23 H 0.094 0.906 24 H 0.090 0.910 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.125 0.875 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.221 0.779 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.864 3.924 8.254 10.353 hybrid contribution 1.388 0.163 -1.419 1.991 sum -3.477 4.086 6.836 8.690 Atomic orbital electron populations 1.21791 0.94361 1.01606 1.02074 1.21226 0.96446 0.96497 0.97491 1.21850 1.00856 0.95672 1.01786 1.21149 0.93221 0.99346 0.97442 1.22586 0.97363 0.98898 0.93670 0.89963 1.23668 1.00876 0.83489 0.94707 1.88997 1.80342 1.30380 1.33099 1.23907 0.95155 0.99056 0.84571 1.20087 0.84491 0.90359 0.87348 1.86154 1.36892 1.86152 1.30179 1.21926 1.22118 1.02718 1.12869 0.92278 1.25769 0.98776 0.96415 0.96358 1.69746 1.42133 1.22491 1.21071 0.85492 0.79192 0.79192 0.77476 1.19995 1.20663 1.19444 0.93080 0.93221 0.91052 0.90576 0.91030 0.93263 0.93580 0.93829 0.93746 0.92171 0.87478 0.91620 0.94204 0.77907 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.39 9.19 71.98 0.66 -2.73 16 2 C -0.10 -2.76 2.84 -10.79 -0.03 -2.79 16 3 C -0.14 -3.79 8.98 71.98 0.65 -3.14 16 4 C -0.07 -2.79 3.17 30.59 0.10 -2.69 16 5 C -0.11 -4.44 2.63 -9.78 -0.03 -4.47 16 6 H 0.08 3.36 5.66 -2.39 -0.01 3.35 16 7 C 0.05 1.86 7.03 72.49 0.51 2.37 16 8 O -0.41 -18.82 11.66 -148.98 -1.74 -20.55 16 9 C 0.05 2.52 5.99 72.49 0.43 2.95 16 10 C 0.22 10.92 1.05 -10.52 -0.01 10.91 16 11 O -0.59 -31.00 11.31 -148.98 -1.68 -32.69 16 12 C -0.56 -29.82 8.14 25.60 0.21 -29.61 16 13 H 0.06 3.12 7.40 -2.91 -0.02 3.10 16 14 C 0.03 1.44 5.23 84.65 0.44 1.88 16 15 N -0.91 -49.07 10.89 21.44 0.23 -48.84 16 16 Si 0.96 41.81 29.54 68.60 2.03 43.84 16 17 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 19 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 20 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 21 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 23 H 0.08 1.96 6.64 -2.39 -0.02 1.95 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.37 6.45 -2.39 -0.02 1.36 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.04 1.76 8.08 -2.39 -0.02 1.74 16 28 H 0.04 1.86 7.67 -2.39 -0.02 1.84 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.11 3.41 6.50 -2.39 -0.02 3.39 16 31 H 0.07 3.49 7.94 -2.38 -0.02 3.47 16 32 H 0.04 2.05 7.86 -2.38 -0.02 2.04 16 33 H 0.37 20.29 7.26 -74.06 -0.54 19.75 16 34 H 0.27 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -57.33 267.61 2.31 -55.02 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.54 Total: 30.54 kcal Atomic # 6 Polarization: -30.26 SS G_CDS: 2.93 Total: -27.32 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: 0.23 Total: -48.84 kcal Atomic # 8 Polarization: -49.82 SS G_CDS: -3.42 Total: -53.24 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Total: -57.33 2.31 -55.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716334716.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.129 kcal (2) G-P(sol) polarization free energy of solvation -57.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds