Wall clock time and date at job start Mon Mar 30 2020 02:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46734 * 2 1 4 4 C 1.52995 * 109.47143 * 119.99881 * 2 1 3 5 5 C 1.53002 * 109.47414 * 175.00554 * 4 2 1 6 6 H 1.09001 * 110.45453 * 56.14488 * 5 4 2 7 7 C 1.54483 * 110.50726 * 293.54772 * 5 4 2 8 8 O 1.44428 * 104.89902 * 217.32051 * 7 5 4 9 9 C 1.44688 * 105.13885 * 40.49479 * 8 7 5 10 10 C 1.54477 * 104.83958 * 319.51776 * 9 8 7 11 11 O 1.42905 * 110.51152 * 142.62246 * 10 9 8 12 12 C 1.50703 * 110.51333 * 265.33584 * 10 9 8 13 13 H 1.07995 * 119.99752 * 114.64186 * 12 10 9 14 14 C 1.37878 * 119.99826 * 294.63916 * 12 10 9 15 15 N 1.31521 * 120.00016 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00011 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47120 * 90.00183 * 16 14 12 18 18 H 1.48504 * 109.46954 * 210.00501 * 16 14 12 19 19 H 1.48505 * 109.46873 * 330.00442 * 16 14 12 20 20 H 1.08995 * 109.47390 * 299.99692 * 1 2 3 21 21 H 1.09005 * 109.47330 * 60.00458 * 1 2 3 22 22 H 1.09003 * 109.46463 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47390 * 240.00307 * 2 1 3 24 24 H 1.08996 * 109.46839 * 300.00054 * 3 2 1 25 25 H 1.08995 * 109.46931 * 60.00026 * 3 2 1 26 26 H 1.09004 * 109.46936 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47381 * 55.00250 * 4 2 1 28 28 H 1.09008 * 109.47406 * 295.00180 * 4 2 1 29 29 H 1.09002 * 110.37322 * 336.20565 * 7 5 4 30 30 H 1.08999 * 110.37312 * 98.43242 * 7 5 4 31 31 H 1.08996 * 110.35300 * 200.67684 * 9 8 7 32 32 H 1.08999 * 110.44929 * 78.41250 * 9 8 7 33 33 H 0.96703 * 113.99161 * 65.36118 * 11 10 9 34 34 H 0.96999 * 119.99548 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1881 6 1 4.0134 0.1558 1.0732 7 6 3.9947 -1.7590 0.0303 8 8 5.1367 -2.4824 0.5387 9 6 4.8023 -2.8010 1.9099 10 6 4.1084 -1.5322 2.4530 11 8 3.0365 -1.8842 3.3300 12 6 5.1029 -0.6483 3.1606 13 1 5.3388 0.3269 2.7609 14 6 5.7115 -1.0845 4.3184 15 7 5.4245 -2.2723 4.8048 16 14 6.9447 0.0108 5.1952 17 1 6.2354 0.8622 6.1837 18 1 7.9455 -0.8331 5.8964 19 1 7.6336 0.8740 4.2024 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.6765 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6054 -1.7198 1.2952 28 1 1.7516 -0.1583 2.1370 29 1 3.1896 -2.4493 -0.2215 30 1 4.2762 -1.1707 -0.8431 31 1 5.7062 -3.0131 2.4810 32 1 4.1218 -3.6516 1.9481 33 1 3.3213 -2.3278 4.1407 34 1 5.8524 -2.5790 5.6195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000716334717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:27 Heat of formation + Delta-G solvation = -120.598581 kcal Electronic energy + Delta-G solvation = -15486.294422 eV Core-core repulsion = 12997.314626 eV Total energy + Delta-G solvation = -2488.979797 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.89755 -35.83495 -34.81881 -32.14836 -30.58640 -27.77383 -26.86500 -25.40033 -24.52069 -21.85115 -19.61007 -18.78301 -17.05100 -15.48897 -15.27557 -14.81862 -14.29658 -14.05260 -13.59160 -13.51217 -12.92040 -12.69608 -11.97390 -11.92421 -11.77797 -11.33837 -11.15424 -11.02526 -10.88474 -10.62525 -10.51070 -10.34111 -10.05754 -9.87121 -9.75353 -9.00864 -8.95749 -8.53048 -8.06061 -6.24177 -4.30868 3.22798 3.29733 3.33904 4.30160 4.91097 5.11917 5.29578 5.30810 5.34523 5.77097 5.80369 5.88290 5.91937 6.03312 6.09314 6.10734 6.25591 6.32099 6.35679 6.49918 6.53532 6.61078 6.70932 6.78550 7.03593 7.15293 7.25889 7.39590 7.71975 7.91985 8.14336 8.71058 9.36561 9.50104 10.82880 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034305 B = 0.010045 C = 0.009258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.017756 B = 2786.878995 C = 3023.581610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.103 4.103 3 C -0.146 4.146 4 C -0.084 4.084 5 C -0.109 4.109 6 H 0.080 0.920 7 C 0.050 3.950 8 O -0.386 6.386 9 C 0.033 3.967 10 C 0.232 3.768 11 O -0.583 6.583 12 C -0.523 4.523 13 H 0.062 0.938 14 C 0.065 3.935 15 N -0.902 5.902 16 Si 0.902 3.098 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.273 1.273 20 H 0.052 0.948 21 H 0.046 0.954 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.072 0.928 31 H 0.100 0.900 32 H 0.031 0.969 33 H 0.382 0.618 34 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.577 2.641 -6.259 8.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.204 4.204 4 C -0.122 4.122 5 C -0.127 4.127 6 H 0.098 0.902 7 C -0.027 4.027 8 O -0.305 6.305 9 C -0.044 4.044 10 C 0.192 3.808 11 O -0.393 6.393 12 C -0.561 4.561 13 H 0.081 0.919 14 C -0.136 4.136 15 N -0.543 5.543 16 Si 0.730 3.270 17 H -0.205 1.205 18 H -0.210 1.210 19 H -0.197 1.197 20 H 0.071 0.929 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.081 0.919 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.118 0.882 32 H 0.049 0.951 33 H 0.233 0.767 34 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -5.687 2.743 -6.695 9.203 hybrid contribution 0.908 0.259 1.115 1.461 sum -4.779 3.002 -5.581 7.937 Atomic orbital electron populations 1.21818 0.95984 1.01274 1.01024 1.21244 0.95053 0.96471 0.99376 1.21866 1.01552 0.96113 1.00829 1.21285 0.94584 1.00073 0.96221 1.22569 0.95640 0.99367 0.95162 0.90178 1.23347 0.88996 0.93650 0.96694 1.89057 1.38567 1.75148 1.27764 1.24251 1.01565 0.97718 0.80823 1.19827 0.84316 0.89962 0.86687 1.86127 1.35789 1.81557 1.35783 1.21684 1.23157 1.02668 1.08605 0.91942 1.25042 0.96475 0.95112 0.96975 1.69568 1.44372 1.18009 1.22391 0.86419 0.80675 0.80341 0.79584 1.20493 1.21030 1.19742 0.92851 0.93479 0.93014 0.91852 0.93675 0.92824 0.92255 0.92279 0.91392 0.93744 0.90934 0.88215 0.95087 0.76701 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.19 37.16 0.34 -1.52 16 2 C -0.10 -1.53 2.83 -90.62 -0.26 -1.79 16 3 C -0.15 -2.07 8.96 37.16 0.33 -1.74 16 4 C -0.08 -1.57 3.12 -26.73 -0.08 -1.65 16 5 C -0.11 -2.31 2.59 -89.05 -0.23 -2.54 16 6 H 0.08 1.72 5.79 -51.93 -0.30 1.42 16 7 C 0.05 1.01 6.23 37.94 0.24 1.24 16 8 O -0.39 -9.17 11.67 -35.23 -0.41 -9.58 16 9 C 0.03 0.83 6.55 37.93 0.25 1.08 16 10 C 0.23 5.80 1.05 -90.20 -0.09 5.71 16 11 O -0.58 -14.81 11.32 -35.23 -0.40 -15.21 16 12 C -0.52 -14.17 8.25 -34.44 -0.28 -14.45 16 13 H 0.06 1.69 7.38 -52.49 -0.39 1.31 16 14 C 0.07 1.73 5.03 -17.82 -0.09 1.64 16 15 N -0.90 -24.09 10.43 55.43 0.58 -23.51 16 16 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 21 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.91 7.34 -51.93 -0.38 0.53 16 24 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 26 H 0.06 0.89 6.50 -51.93 -0.34 0.55 16 27 H 0.06 1.14 7.87 -51.93 -0.41 0.73 16 28 H 0.07 1.37 7.87 -51.92 -0.41 0.97 16 29 H 0.04 0.83 7.81 -51.93 -0.41 0.42 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.10 2.68 6.78 -51.93 -0.35 2.33 16 32 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 33 H 0.38 9.98 7.02 45.56 0.32 10.30 16 34 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 267.70 15.07 4.03 4.03 Total: -1.00 -27.30 267.70 -5.85 -33.15 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -4.75 Total: 9.28 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: 0.12 Total: -14.02 kcal Atomic # 7 Polarization: -24.09 SS G_CDS: 0.58 Total: -23.51 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.81 Total: -24.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -27.30 -5.85 -33.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716334717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.451 kcal (2) G-P(sol) polarization free energy of solvation -27.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds