Wall clock time and date at job start Mon Mar 30 2020 02:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.46734 * 2 1 4 4 C 1.52995 * 109.47143 * 119.99881 * 2 1 3 5 5 C 1.53002 * 109.47414 * 175.00554 * 4 2 1 6 6 H 1.09001 * 110.45453 * 56.14488 * 5 4 2 7 7 C 1.54483 * 110.50726 * 293.54772 * 5 4 2 8 8 O 1.44428 * 104.89902 * 217.32051 * 7 5 4 9 9 C 1.44688 * 105.13885 * 40.49479 * 8 7 5 10 10 C 1.54477 * 104.83958 * 319.51776 * 9 8 7 11 11 O 1.42905 * 110.51152 * 142.62246 * 10 9 8 12 12 C 1.50703 * 110.51333 * 265.33584 * 10 9 8 13 13 H 1.07995 * 119.99752 * 114.64186 * 12 10 9 14 14 C 1.37878 * 119.99826 * 294.63916 * 12 10 9 15 15 N 1.31521 * 120.00016 * 0.02562 * 14 12 10 16 16 Si 1.86799 * 120.00011 * 179.97438 * 14 12 10 17 17 H 1.48497 * 109.47120 * 90.00183 * 16 14 12 18 18 H 1.48504 * 109.46954 * 210.00501 * 16 14 12 19 19 H 1.48505 * 109.46873 * 330.00442 * 16 14 12 20 20 H 1.08995 * 109.47390 * 299.99692 * 1 2 3 21 21 H 1.09005 * 109.47330 * 60.00458 * 1 2 3 22 22 H 1.09003 * 109.46463 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47390 * 240.00307 * 2 1 3 24 24 H 1.08996 * 109.46839 * 300.00054 * 3 2 1 25 25 H 1.08995 * 109.46931 * 60.00026 * 3 2 1 26 26 H 1.09004 * 109.46936 * 179.97438 * 3 2 1 27 27 H 1.09000 * 109.47381 * 55.00250 * 4 2 1 28 28 H 1.09008 * 109.47406 * 295.00180 * 4 2 1 29 29 H 1.09002 * 110.37322 * 336.20565 * 7 5 4 30 30 H 1.08999 * 110.37312 * 98.43242 * 7 5 4 31 31 H 1.08996 * 110.35300 * 200.67684 * 9 8 7 32 32 H 1.08999 * 110.44929 * 78.41250 * 9 8 7 33 33 H 0.96703 * 113.99161 * 65.36118 * 11 10 9 34 34 H 0.96999 * 119.99548 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8309 1.1881 6 1 4.0134 0.1558 1.0732 7 6 3.9947 -1.7590 0.0303 8 8 5.1367 -2.4824 0.5387 9 6 4.8023 -2.8010 1.9099 10 6 4.1084 -1.5322 2.4530 11 8 3.0365 -1.8842 3.3300 12 6 5.1029 -0.6483 3.1606 13 1 5.3388 0.3269 2.7609 14 6 5.7115 -1.0845 4.3184 15 7 5.4245 -2.2723 4.8048 16 14 6.9447 0.0108 5.1952 17 1 6.2354 0.8622 6.1837 18 1 7.9455 -0.8331 5.8964 19 1 7.6336 0.8740 4.2024 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3632 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8900 24 1 1.6765 1.9564 -0.8900 25 1 1.6766 1.9564 0.8900 26 1 3.1300 1.4426 0.0005 27 1 1.6054 -1.7198 1.2952 28 1 1.7516 -0.1583 2.1370 29 1 3.1896 -2.4493 -0.2215 30 1 4.2762 -1.1707 -0.8431 31 1 5.7062 -3.0131 2.4810 32 1 4.1218 -3.6516 1.9481 33 1 3.3213 -2.3278 4.1407 34 1 5.8524 -2.5790 5.6195 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000716334717.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:26 Heat of formation + Delta-G solvation = -138.668071 kcal Electronic energy + Delta-G solvation = -15487.077974 eV Core-core repulsion = 12997.314626 eV Total energy + Delta-G solvation = -2489.763349 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.67882 -37.20483 -36.76745 -34.18999 -32.20508 -29.67470 -27.95022 -27.15016 -26.30279 -23.56206 -21.17980 -20.38569 -18.99614 -17.37281 -17.10990 -16.52570 -15.96241 -15.68032 -15.37001 -14.88494 -14.59930 -14.06213 -13.78858 -13.56610 -13.09801 -13.04300 -12.84182 -12.73816 -12.32055 -12.26005 -12.21061 -12.01500 -11.63785 -11.37037 -11.22531 -10.83109 -10.81403 -10.47990 -10.05274 -8.26584 -6.41022 1.38596 1.40383 1.50162 2.36363 2.95229 3.28995 3.89163 3.97919 4.09777 4.18164 4.28670 4.31474 4.49414 4.55377 4.74120 4.84012 4.86170 4.93331 4.98077 5.08280 5.14882 5.19995 5.22273 5.36992 5.41864 5.48742 5.62061 5.65471 5.68828 6.00989 6.18183 6.63455 7.29689 7.42681 8.78913 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.034305 B = 0.010045 C = 0.009258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.017756 B = 2786.878995 C = 3023.581610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.098 4.098 3 C -0.146 4.146 4 C -0.074 4.074 5 C -0.106 4.106 6 H 0.074 0.926 7 C 0.050 3.950 8 O -0.401 6.401 9 C 0.042 3.958 10 C 0.217 3.783 11 O -0.584 6.584 12 C -0.551 4.551 13 H 0.053 0.947 14 C 0.025 3.975 15 N -0.916 5.916 16 Si 0.960 3.040 17 H -0.274 1.274 18 H -0.279 1.279 19 H -0.273 1.273 20 H 0.048 0.952 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.075 0.925 24 H 0.070 0.930 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.073 0.927 32 H 0.033 0.967 33 H 0.375 0.625 34 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.074 3.411 -7.386 10.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 C -0.203 4.203 4 C -0.112 4.112 5 C -0.125 4.125 6 H 0.092 0.908 7 C -0.027 4.027 8 O -0.320 6.320 9 C -0.035 4.035 10 C 0.177 3.823 11 O -0.393 6.393 12 C -0.588 4.588 13 H 0.072 0.928 14 C -0.175 4.175 15 N -0.557 5.557 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.204 1.204 19 H -0.197 1.197 20 H 0.067 0.933 21 H 0.088 0.912 22 H 0.072 0.928 23 H 0.094 0.906 24 H 0.089 0.911 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.063 0.937 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.091 0.909 32 H 0.051 0.949 33 H 0.225 0.775 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.195 3.513 -7.834 10.587 hybrid contribution 1.056 0.008 1.458 1.801 sum -5.138 3.520 -6.376 8.913 Atomic orbital electron populations 1.21790 0.94248 1.01790 1.01989 1.21208 0.96497 0.96434 0.97500 1.21858 1.00758 0.95843 1.01814 1.21179 0.92725 0.99778 0.97487 1.22539 0.97292 0.98908 0.93757 0.90759 1.23578 0.88466 0.93721 0.96891 1.89023 1.40372 1.75722 1.26926 1.23991 1.00225 0.97870 0.81446 1.20034 0.84294 0.90165 0.87806 1.86133 1.36079 1.81469 1.35579 1.21924 1.24483 1.02822 1.09612 0.92836 1.25728 0.97909 0.96320 0.97511 1.69642 1.44707 1.18806 1.22518 0.85516 0.78672 0.78783 0.78441 1.19998 1.20403 1.19738 0.93263 0.91169 0.92785 0.90647 0.91077 0.93489 0.93476 0.93161 0.93656 0.91981 0.87892 0.90885 0.94858 0.77510 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 9.19 71.98 0.66 -2.59 16 2 C -0.10 -2.68 2.83 -10.79 -0.03 -2.71 16 3 C -0.15 -3.80 8.96 71.98 0.65 -3.15 16 4 C -0.07 -2.69 3.12 30.59 0.10 -2.60 16 5 C -0.11 -4.44 2.59 -9.78 -0.03 -4.47 16 6 H 0.07 3.17 5.79 -2.39 -0.01 3.16 16 7 C 0.05 1.89 6.23 72.49 0.45 2.34 16 8 O -0.40 -18.74 11.67 -148.98 -1.74 -20.48 16 9 C 0.04 2.10 6.55 72.48 0.47 2.58 16 10 C 0.22 10.94 1.05 -10.52 -0.01 10.93 16 11 O -0.58 -30.14 11.32 -148.98 -1.69 -31.83 16 12 C -0.55 -30.19 8.25 25.60 0.21 -29.98 16 13 H 0.05 2.95 7.38 -2.91 -0.02 2.92 16 14 C 0.03 1.34 5.03 84.65 0.43 1.77 16 15 N -0.92 -49.38 10.43 21.45 0.22 -49.15 16 16 Si 0.96 42.84 29.54 68.60 2.03 44.86 16 17 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 21 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 22 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 23 H 0.08 1.91 7.34 -2.39 -0.02 1.89 16 24 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 1.33 6.50 -2.39 -0.02 1.32 16 27 H 0.05 1.89 7.87 -2.39 -0.02 1.87 16 28 H 0.04 1.83 7.87 -2.38 -0.02 1.81 16 29 H 0.06 2.16 7.81 -2.39 -0.02 2.14 16 30 H 0.10 3.29 8.14 -2.39 -0.02 3.27 16 31 H 0.07 4.02 6.78 -2.39 -0.02 4.01 16 32 H 0.03 1.62 8.08 -2.39 -0.02 1.60 16 33 H 0.37 20.06 7.02 -74.06 -0.52 19.54 16 34 H 0.27 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -57.74 267.70 2.28 -55.46 By element: Atomic # 1 Polarization: 28.46 SS G_CDS: 0.55 Total: 29.01 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 2.90 Total: -27.87 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.22 Total: -49.15 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: -3.43 Total: -52.31 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -57.74 2.28 -55.46 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000716334717.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.206 kcal (2) G-P(sol) polarization free energy of solvation -57.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds