Wall clock time and date at job start Mon Mar 30 2020 02:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47407 * 2 1 4 4 C 1.50700 * 109.47210 * 239.99896 * 2 1 3 5 5 H 1.08000 * 120.00440 * 239.99930 * 4 2 1 6 6 C 1.37880 * 119.99963 * 60.00026 * 4 2 1 7 7 N 1.31511 * 119.99874 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00224 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47011 * 89.99708 * 8 6 4 10 10 H 1.48500 * 109.47353 * 210.00081 * 8 6 4 11 11 H 1.48506 * 109.47017 * 330.00018 * 8 6 4 12 12 C 1.50708 * 109.47422 * 120.00031 * 2 1 3 13 13 O 1.21283 * 119.99931 * 120.00250 * 12 2 1 14 14 N 1.34769 * 119.99661 * 300.00101 * 12 2 1 15 15 C 1.47104 * 120.84238 * 179.97438 * 14 12 2 16 16 C 1.53419 * 108.22091 * 129.43607 * 15 14 12 17 17 O 1.43165 * 108.69228 * 49.37452 * 16 15 14 18 18 C 1.42975 * 113.78508 * 301.28945 * 17 16 15 19 19 N 1.37117 * 120.84709 * 0.02562 * 14 12 2 20 20 H 1.09001 * 109.46801 * 299.99782 * 1 2 3 21 21 H 1.08988 * 109.47088 * 60.00123 * 1 2 3 22 22 H 1.09002 * 109.46713 * 180.02562 * 1 2 3 23 23 H 0.97000 * 120.00192 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.71397 * 9.75427 * 15 14 12 25 25 H 1.09007 * 109.71447 * 249.11387 * 15 14 12 26 26 H 1.09002 * 109.60450 * 289.61593 * 16 15 14 27 27 H 1.09002 * 109.60126 * 169.13833 * 16 15 14 28 28 H 1.09003 * 109.47059 * 180.96303 * 18 17 16 29 29 H 1.09010 * 109.47013 * 300.95799 * 18 17 16 30 30 H 1.00901 * 111.00066 * 109.75082 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4545 15 6 2.1865 -0.9292 3.6680 16 6 2.8214 0.1224 4.5872 17 8 1.9160 1.2235 4.7186 18 6 1.5787 1.8443 3.4756 19 7 0.9192 0.8629 2.6005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 0.7087 1.1612 -3.4844 24 1 2.9298 -1.6799 3.3997 25 1 1.3492 -1.4058 4.1780 26 1 3.7588 0.4697 4.1527 27 1 3.0100 -0.3150 5.5676 28 1 0.9030 2.6799 3.6583 29 1 2.4859 2.2092 2.9937 30 1 0.0074 0.6166 2.9557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928946530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:29 Heat of formation + Delta-G solvation = -43.262998 kcal Electronic energy + Delta-G solvation = -15009.574070 eV Core-core repulsion = 12420.407453 eV Total energy + Delta-G solvation = -2589.166618 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.10483 -37.90322 -35.03346 -33.70137 -31.99559 -30.38701 -27.87463 -25.14884 -24.88996 -23.27581 -21.19223 -19.34404 -16.96199 -16.44632 -16.32465 -15.85255 -15.48916 -14.97315 -14.50392 -14.43407 -13.50041 -13.25574 -12.54112 -12.25587 -11.66500 -11.41910 -11.19037 -10.94645 -10.64057 -10.51504 -10.29750 -10.12028 -9.91566 -9.28687 -8.81534 -8.53755 -8.34975 -8.20767 -5.94882 -3.98500 3.00296 3.37327 3.42860 3.50038 3.60908 3.81678 4.40596 4.54367 4.93215 5.02826 5.17452 5.37723 5.50717 5.55132 5.63202 5.81081 6.30724 6.57753 6.89971 7.11155 7.16189 7.18105 7.23303 7.66223 7.90453 8.05188 8.27471 8.53957 9.08286 9.16211 9.66081 11.12041 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055035 B = 0.008530 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.645266 B = 3281.663976 C = 3570.288223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.048 3.952 3 H 0.056 0.944 4 C -0.506 4.506 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.548 3.452 13 O -0.541 6.541 14 N -0.482 5.482 15 C 0.047 3.953 16 C 0.049 3.951 17 O -0.415 6.415 18 C 0.200 3.800 19 N -0.435 5.435 20 H 0.031 0.969 21 H 0.088 0.912 22 H 0.019 0.981 23 H 0.259 0.741 24 H 0.104 0.896 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.076 0.924 30 H 0.344 0.656 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.458 1.998 12.186 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.027 3.973 3 H 0.074 0.926 4 C -0.545 4.545 5 H 0.089 0.911 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.342 3.658 13 O -0.414 6.414 14 N -0.311 5.311 15 C -0.078 4.078 16 C -0.029 4.029 17 O -0.330 6.330 18 C 0.034 3.966 19 N -0.169 5.169 20 H 0.050 0.950 21 H 0.107 0.893 22 H 0.039 0.961 23 H 0.069 0.931 24 H 0.123 0.877 25 H 0.085 0.915 26 H 0.076 0.924 27 H 0.119 0.881 28 H 0.137 0.863 29 H 0.094 0.906 30 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 0.050 1.893 11.559 11.714 hybrid contribution 0.151 -0.780 -0.060 0.797 sum 0.201 1.113 11.499 11.555 Atomic orbital electron populations 1.21716 0.96274 0.99017 1.01683 1.18671 0.94522 0.96617 0.87479 0.92587 1.21240 1.31024 1.12783 0.89407 0.91117 1.24925 0.95196 0.95076 0.98945 1.69895 1.37079 1.23020 1.23320 0.86500 0.79403 0.79272 0.82290 1.20734 1.21321 1.19849 1.22209 0.77188 0.83270 0.83163 1.90543 1.38587 1.27198 1.85061 1.48012 1.51707 1.25556 1.05831 1.22567 1.01029 0.96662 0.87540 1.23015 0.92244 0.87218 1.00428 1.88061 1.65220 1.47458 1.32234 1.24073 0.99548 0.92743 0.80218 1.62122 1.01943 1.02348 1.50503 0.94967 0.89323 0.96147 0.93083 0.87730 0.91505 0.92359 0.88145 0.86254 0.90604 0.83420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.81 37.16 0.33 -2.73 16 2 C 0.05 1.23 2.21 -92.92 -0.21 1.03 16 3 H 0.06 1.52 8.14 -51.93 -0.42 1.09 16 4 C -0.51 -14.64 8.37 -34.44 -0.29 -14.93 16 5 H 0.07 2.15 6.75 -52.49 -0.35 1.80 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.89 -25.49 11.32 55.43 0.63 -24.87 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 12 C 0.55 12.90 7.13 -10.98 -0.08 12.82 16 13 O -0.54 -14.21 14.92 5.55 0.08 -14.13 16 14 N -0.48 -8.88 3.26 -59.65 -0.19 -9.08 16 15 C 0.05 0.71 6.77 -3.50 -0.02 0.69 16 16 C 0.05 0.61 7.11 37.37 0.27 0.88 16 17 O -0.41 -5.60 10.88 -35.23 -0.38 -5.99 16 18 C 0.20 2.63 7.72 60.17 0.46 3.10 16 19 N -0.43 -6.84 4.67 -14.43 -0.07 -6.91 16 20 H 0.03 0.64 5.79 -51.93 -0.30 0.34 16 21 H 0.09 2.31 6.07 -51.94 -0.32 1.99 16 22 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 23 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 24 H 0.10 1.68 7.07 -51.93 -0.37 1.32 16 25 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 27 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 30 H 0.34 4.77 8.68 -181.00 -1.57 3.20 16 LS Contribution 248.99 15.07 3.75 3.75 Total: -1.00 -31.87 248.99 -5.84 -37.71 By element: Atomic # 1 Polarization: 5.01 SS G_CDS: -5.00 Total: 0.00 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 0.37 Total: 2.43 kcal Atomic # 7 Polarization: -41.22 SS G_CDS: 0.37 Total: -40.85 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.30 Total: -20.11 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -31.87 -5.84 -37.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928946530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.550 kcal (2) G-P(sol) polarization free energy of solvation -31.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds