Wall clock time and date at job start Mon Mar 30 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47407 * 2 1 4 4 C 1.50700 * 109.47210 * 239.99896 * 2 1 3 5 5 H 1.08000 * 120.00440 * 239.99930 * 4 2 1 6 6 C 1.37880 * 119.99963 * 60.00026 * 4 2 1 7 7 N 1.31511 * 119.99874 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00224 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47011 * 89.99708 * 8 6 4 10 10 H 1.48500 * 109.47353 * 210.00081 * 8 6 4 11 11 H 1.48506 * 109.47017 * 330.00018 * 8 6 4 12 12 C 1.50708 * 109.47422 * 120.00031 * 2 1 3 13 13 O 1.21283 * 119.99931 * 120.00250 * 12 2 1 14 14 N 1.34769 * 119.99661 * 300.00101 * 12 2 1 15 15 C 1.47104 * 120.84238 * 179.97438 * 14 12 2 16 16 C 1.53419 * 108.22091 * 129.43607 * 15 14 12 17 17 O 1.43165 * 108.69228 * 49.37452 * 16 15 14 18 18 C 1.42975 * 113.78508 * 301.28945 * 17 16 15 19 19 N 1.37117 * 120.84709 * 0.02562 * 14 12 2 20 20 H 1.09001 * 109.46801 * 299.99782 * 1 2 3 21 21 H 1.08988 * 109.47088 * 60.00123 * 1 2 3 22 22 H 1.09002 * 109.46713 * 180.02562 * 1 2 3 23 23 H 0.97000 * 120.00192 * 179.97438 * 7 6 4 24 24 H 1.08997 * 109.71397 * 9.75427 * 15 14 12 25 25 H 1.09007 * 109.71447 * 249.11387 * 15 14 12 26 26 H 1.09002 * 109.60450 * 289.61593 * 16 15 14 27 27 H 1.09002 * 109.60126 * 169.13833 * 16 15 14 28 28 H 1.09003 * 109.47059 * 180.96303 * 18 17 16 29 29 H 1.09010 * 109.47013 * 300.95799 * 18 17 16 30 30 H 1.00901 * 111.00066 * 109.75082 * 19 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3225 -1.1195 -4.0080 9 1 1.3448 -2.1615 -4.4123 10 1 2.4873 -0.1402 -5.1120 11 1 3.6309 -1.7565 -3.7119 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6965 1.1192 14 7 1.7068 -0.2500 2.4545 15 6 2.1865 -0.9292 3.6680 16 6 2.8214 0.1224 4.5872 17 8 1.9160 1.2235 4.7186 18 6 1.5787 1.8443 3.4756 19 7 0.9192 0.8629 2.6005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 0.0005 23 1 0.7087 1.1612 -3.4844 24 1 2.9298 -1.6799 3.3997 25 1 1.3492 -1.4058 4.1780 26 1 3.7588 0.4697 4.1527 27 1 3.0100 -0.3150 5.5676 28 1 0.9030 2.6799 3.6583 29 1 2.4859 2.2092 2.9937 30 1 0.0074 0.6166 2.9557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928946530.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:28 Heat of formation + Delta-G solvation = -67.427970 kcal Electronic energy + Delta-G solvation = -15010.621942 eV Core-core repulsion = 12420.407453 eV Total energy + Delta-G solvation = -2590.214489 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.51805 -39.45526 -36.43162 -35.74897 -33.25795 -32.39599 -29.27824 -27.15872 -26.14467 -24.87993 -22.75352 -20.91078 -18.46617 -18.05971 -17.97825 -17.33040 -16.91545 -16.47706 -16.07625 -15.80759 -15.16155 -15.05865 -14.28036 -13.74556 -13.40334 -12.96299 -12.72182 -12.65790 -12.40582 -12.35034 -12.13537 -11.99514 -11.40182 -10.99384 -10.80671 -10.51434 -9.95851 -9.81656 -8.10657 -6.22137 1.41520 1.41826 1.52521 1.61931 1.78485 2.45647 2.78758 3.17631 3.22744 3.81390 3.94826 4.06269 4.38452 4.47818 4.54981 4.69446 4.74995 4.89278 5.16507 5.25117 5.46957 5.57533 5.69584 5.81688 6.02871 6.10539 6.28251 6.79583 6.91108 7.37369 7.48989 8.94535 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.055035 B = 0.008530 C = 0.007841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.645266 B = 3281.663976 C = 3570.288223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.046 3.954 3 H 0.037 0.963 4 C -0.536 4.536 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.547 3.453 13 O -0.580 6.580 14 N -0.476 5.476 15 C 0.045 3.955 16 C 0.054 3.946 17 O -0.413 6.413 18 C 0.202 3.798 19 N -0.451 5.451 20 H 0.067 0.933 21 H 0.065 0.935 22 H 0.010 0.990 23 H 0.264 0.736 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.052 0.948 27 H 0.136 0.864 28 H 0.155 0.845 29 H 0.065 0.935 30 H 0.359 0.641 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 2.495 13.345 13.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.025 3.975 3 H 0.055 0.945 4 C -0.574 4.574 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.199 1.199 11 H -0.204 1.204 12 C 0.339 3.661 13 O -0.456 6.456 14 N -0.301 5.301 15 C -0.079 4.079 16 C -0.024 4.024 17 O -0.328 6.328 18 C 0.037 3.963 19 N -0.187 5.187 20 H 0.086 0.914 21 H 0.084 0.916 22 H 0.029 0.971 23 H 0.073 0.927 24 H 0.109 0.891 25 H 0.106 0.894 26 H 0.071 0.929 27 H 0.154 0.846 28 H 0.173 0.827 29 H 0.083 0.917 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.468 2.424 12.770 13.006 hybrid contribution 0.288 -0.883 -0.344 0.990 sum -0.179 1.542 12.426 12.523 Atomic orbital electron populations 1.21530 0.94899 0.98459 1.02238 1.18527 0.95586 0.95317 0.88057 0.94487 1.21400 1.31750 1.12770 0.91517 0.93536 1.25596 0.95231 0.95757 1.01356 1.69977 1.37113 1.23503 1.24172 0.85613 0.78616 0.78562 0.79181 1.19957 1.19907 1.20390 1.21646 0.77156 0.82839 0.84457 1.90514 1.40314 1.28722 1.86075 1.47627 1.50987 1.26025 1.05478 1.22818 1.01631 0.97158 0.86276 1.23108 0.91441 0.86316 1.01494 1.88076 1.65241 1.47465 1.32019 1.24207 0.99852 0.92575 0.79663 1.62030 1.02574 1.01760 1.52362 0.91430 0.91648 0.97077 0.92666 0.89084 0.89379 0.92940 0.84615 0.82739 0.91690 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.36 8.81 71.98 0.63 -4.73 16 2 C 0.05 2.41 2.21 -12.28 -0.03 2.38 16 3 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 4 C -0.54 -31.82 8.37 25.60 0.21 -31.61 16 5 H 0.05 2.93 6.75 -2.91 -0.02 2.91 16 6 C 0.02 1.13 5.30 84.66 0.45 1.58 16 7 N -0.91 -51.99 11.32 21.45 0.24 -51.74 16 8 Si 0.95 45.54 29.54 68.60 2.03 47.56 16 9 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 12 C 0.55 26.02 7.13 87.66 0.63 26.64 16 13 O -0.58 -31.24 14.92 -3.04 -0.05 -31.28 16 14 N -0.48 -17.03 3.26 -461.04 -1.50 -18.53 16 15 C 0.05 1.28 6.77 86.40 0.59 1.86 16 16 C 0.05 1.21 7.11 72.12 0.51 1.72 16 17 O -0.41 -9.77 10.88 -148.98 -1.62 -11.39 16 18 C 0.20 4.77 7.72 127.65 0.99 5.76 16 19 N -0.45 -13.27 4.67 -299.60 -1.40 -14.67 16 20 H 0.07 2.63 5.79 -2.39 -0.01 2.62 16 21 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 22 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 23 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 24 H 0.09 2.87 7.07 -2.39 -0.02 2.85 16 25 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.14 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 29 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.36 8.91 8.68 -210.25 -1.82 7.09 16 Total: -1.00 -69.27 248.99 1.00 -68.27 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -0.67 Total: 8.19 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: 3.98 Total: 3.61 kcal Atomic # 7 Polarization: -82.29 SS G_CDS: -2.66 Total: -84.95 kcal Atomic # 8 Polarization: -41.01 SS G_CDS: -1.67 Total: -42.68 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -69.27 1.00 -68.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928946530.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.839 kcal (2) G-P(sol) polarization free energy of solvation -69.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds