Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41603 * 114.00304 * 2 1 4 4 C 1.46757 * 124.35349 * 89.99855 * 3 2 1 5 5 C 1.54475 * 105.47567 * 162.98260 * 4 3 2 6 6 C 1.54630 * 101.76528 * 25.41249 * 5 4 3 7 7 H 1.08998 * 110.48585 * 94.01602 * 6 5 4 8 8 N 1.46501 * 110.48574 * 216.52858 * 6 5 4 9 9 C 1.46503 * 120.00364 * 58.16028 * 8 6 5 10 10 C 1.36938 * 119.99880 * 238.16068 * 8 6 5 11 11 H 1.07997 * 119.99597 * 334.63647 * 10 8 6 12 12 C 1.38818 * 120.00016 * 154.63763 * 10 8 6 13 13 N 1.31618 * 119.99903 * 4.00312 * 12 10 8 14 14 Si 1.86800 * 119.99547 * 184.00046 * 12 10 8 15 15 H 1.48496 * 109.47372 * 90.00305 * 14 12 10 16 16 H 1.48506 * 109.46573 * 209.99724 * 14 12 10 17 17 H 1.48498 * 109.47266 * 329.99623 * 14 12 10 18 18 C 1.34657 * 124.30846 * 270.11832 * 3 2 1 19 19 O 1.21277 * 125.07291 * 0.40369 * 18 3 2 20 20 H 1.08999 * 109.46603 * 60.00304 * 1 2 3 21 21 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47218 * 300.00767 * 1 2 3 23 23 H 1.08996 * 110.24570 * 43.97635 * 4 3 2 24 24 H 1.09003 * 110.24315 * 281.98235 * 4 3 2 25 25 H 1.09008 * 110.96665 * 267.29588 * 5 4 3 26 26 H 1.08997 * 110.97408 * 143.53445 * 5 4 3 27 27 H 1.09006 * 109.46779 * 264.47658 * 9 8 6 28 28 H 1.08994 * 109.47543 * 144.47789 * 9 8 6 29 29 H 1.09004 * 109.47036 * 24.47300 * 9 8 6 30 30 H 0.96996 * 119.99876 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3419 2.0501 1.2116 5 6 3.3126 3.1590 0.7486 6 6 2.9194 3.3217 -0.7380 7 1 2.1869 4.1206 -0.8536 8 7 4.1047 3.5924 -1.5552 9 6 5.2183 2.6406 -1.5686 10 6 4.1718 4.7352 -2.3067 11 1 3.2641 5.2199 -2.6346 12 6 5.4066 5.2706 -2.6471 13 7 6.5121 4.6381 -2.3153 14 14 5.4989 6.8886 -3.5760 15 1 5.5567 8.0129 -2.6075 16 1 6.7175 6.9033 -4.4246 17 1 4.2961 7.0360 -4.4343 18 6 2.3117 1.9879 -1.1123 19 8 2.1294 1.6015 -2.2473 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 2.8300 1.4007 1.9383 24 1 1.4432 2.4914 1.6427 25 1 4.3490 2.8352 0.8447 26 1 3.1414 4.0830 1.3008 27 1 5.9736 2.9550 -0.8482 28 1 5.6579 2.6094 -2.5655 29 1 4.8521 1.6492 -1.3017 30 1 7.3749 5.0124 -2.5528 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929491134.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = 10.357991 kcal Electronic energy + Delta-G solvation = -14947.159424 eV Core-core repulsion = 12360.317987 eV Total energy + Delta-G solvation = -2586.841437 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.74552 -36.74925 -35.89212 -34.44141 -31.19340 -28.98217 -26.72482 -26.31314 -25.92662 -22.56237 -20.98242 -19.23369 -17.31932 -17.15044 -16.05189 -15.40720 -15.06123 -14.39571 -14.04785 -13.71689 -13.41445 -13.07577 -12.83007 -12.25879 -12.12907 -11.70770 -11.36864 -10.90134 -10.80435 -10.52859 -10.44742 -10.38181 -10.10254 -9.93544 -9.17476 -8.60523 -8.50469 -6.84132 -5.78858 -3.27629 2.10530 3.11588 3.37344 3.43598 3.45821 4.43807 4.74033 5.03680 5.09355 5.20224 5.24560 5.34745 5.41823 5.51785 5.56962 5.67949 5.84547 5.99346 6.38211 6.59409 6.81243 7.12018 7.41257 7.49129 7.71888 7.82164 8.32302 8.77188 9.16843 9.74049 10.22658 11.25668 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.056771 B = 0.008239 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.094841 B = 3397.599810 C = 3485.948411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.146 6.146 3 N -0.496 5.496 4 C 0.109 3.891 5 C -0.145 4.145 6 C 0.163 3.837 7 H 0.107 0.893 8 N -0.571 5.571 9 C 0.165 3.835 10 C -0.263 4.263 11 H 0.072 0.928 12 C 0.010 3.990 13 N -0.906 5.906 14 Si 0.912 3.088 15 H -0.285 1.285 16 H -0.290 1.290 17 H -0.279 1.279 18 C 0.499 3.501 19 O -0.510 6.510 20 H 0.050 0.950 21 H 0.098 0.902 22 H 0.047 0.953 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.090 0.910 27 H 0.033 0.967 28 H 0.057 0.943 29 H -0.008 1.008 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.502 -3.691 8.762 12.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.145 6.145 3 N -0.282 5.282 4 C -0.012 4.012 5 C -0.185 4.185 6 C 0.048 3.952 7 H 0.125 0.875 8 N -0.292 5.292 9 C 0.021 3.979 10 C -0.392 4.392 11 H 0.090 0.910 12 C -0.189 4.189 13 N -0.551 5.551 14 Si 0.741 3.259 15 H -0.212 1.212 16 H -0.216 1.216 17 H -0.204 1.204 18 C 0.286 3.714 19 O -0.381 6.381 20 H 0.069 0.931 21 H 0.117 0.883 22 H 0.066 0.934 23 H 0.094 0.906 24 H 0.082 0.918 25 H 0.108 0.892 26 H 0.109 0.891 27 H 0.051 0.949 28 H 0.076 0.924 29 H 0.010 0.990 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.293 -4.115 8.031 12.256 hybrid contribution -0.300 0.602 -0.352 0.759 sum -8.593 -3.513 7.679 12.048 Atomic orbital electron populations 1.23243 0.82681 1.03085 1.00911 1.90629 1.19319 1.07963 1.96637 1.51017 1.59632 1.09009 1.08498 1.22263 0.98839 0.93300 0.86823 1.23274 0.99951 0.97329 0.97955 1.20874 0.92329 0.91382 0.90568 0.87502 1.43757 1.13764 1.22045 1.49590 1.20934 0.88577 0.86602 1.01823 1.19264 0.92611 1.00341 1.26941 0.90995 1.25136 0.95410 0.98329 0.99989 1.70099 0.97026 1.38104 1.49827 0.86145 0.77271 0.83396 0.79081 1.21194 1.21580 1.20387 1.23471 0.76748 0.87392 0.83799 1.90638 1.53410 1.72933 1.21165 0.93082 0.88340 0.93391 0.90555 0.91751 0.89188 0.89145 0.94852 0.92439 0.98969 0.93501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.01 11.47 101.05 1.16 1.15 16 2 O -0.15 -2.53 11.80 -19.03 -0.22 -2.75 16 3 N -0.50 -8.92 3.53 -59.15 -0.21 -9.13 16 4 C 0.11 1.50 7.66 -3.13 -0.02 1.47 16 5 C -0.14 -2.30 6.77 -25.10 -0.17 -2.47 16 6 C 0.16 3.36 3.41 -67.94 -0.23 3.13 16 7 H 0.11 2.06 7.93 -51.93 -0.41 1.65 16 8 N -0.57 -14.57 2.91 -173.49 -0.50 -15.07 16 9 C 0.16 4.25 7.71 59.85 0.46 4.71 16 10 C -0.26 -7.22 9.61 -15.06 -0.14 -7.36 16 11 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 12 C 0.01 0.27 5.38 -17.43 -0.09 0.18 16 13 N -0.91 -26.01 10.13 55.49 0.56 -25.45 16 14 Si 0.91 21.60 29.56 -169.99 -5.02 16.58 16 15 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 C 0.50 10.83 6.74 -10.75 -0.07 10.76 16 19 O -0.51 -13.21 17.99 -2.00 -0.04 -13.25 16 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 21 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 22 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.57 7.14 -51.92 -0.37 1.20 16 26 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 27 H 0.03 0.87 7.41 -51.93 -0.38 0.49 16 28 H 0.06 1.64 7.03 -51.93 -0.37 1.27 16 29 H -0.01 -0.20 7.20 -51.93 -0.37 -0.58 16 30 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 257.66 15.07 3.88 3.88 Total: -1.00 -33.11 257.66 -4.66 -37.77 By element: Atomic # 1 Polarization: -0.15 SS G_CDS: -3.99 Total: -4.13 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 0.88 Total: 11.56 kcal Atomic # 7 Polarization: -49.50 SS G_CDS: -0.15 Total: -49.65 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.26 Total: -16.00 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -33.11 -4.66 -37.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929491134.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.126 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds