Wall clock time and date at job start Mon Mar 30 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 N 1.41603 * 114.00304 * 2 1 4 4 C 1.46757 * 124.35349 * 89.99855 * 3 2 1 5 5 C 1.54475 * 105.47567 * 162.98260 * 4 3 2 6 6 C 1.54630 * 101.76528 * 25.41249 * 5 4 3 7 7 H 1.08998 * 110.48585 * 94.01602 * 6 5 4 8 8 N 1.46501 * 110.48574 * 216.52858 * 6 5 4 9 9 C 1.46503 * 120.00364 * 58.16028 * 8 6 5 10 10 C 1.36938 * 119.99880 * 238.16068 * 8 6 5 11 11 H 1.07997 * 119.99597 * 334.63647 * 10 8 6 12 12 C 1.38818 * 120.00016 * 154.63763 * 10 8 6 13 13 N 1.31618 * 119.99903 * 4.00312 * 12 10 8 14 14 Si 1.86800 * 119.99547 * 184.00046 * 12 10 8 15 15 H 1.48496 * 109.47372 * 90.00305 * 14 12 10 16 16 H 1.48506 * 109.46573 * 209.99724 * 14 12 10 17 17 H 1.48498 * 109.47266 * 329.99623 * 14 12 10 18 18 C 1.34657 * 124.30846 * 270.11832 * 3 2 1 19 19 O 1.21277 * 125.07291 * 0.40369 * 18 3 2 20 20 H 1.08999 * 109.46603 * 60.00304 * 1 2 3 21 21 H 1.08994 * 109.47185 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47218 * 300.00767 * 1 2 3 23 23 H 1.08996 * 110.24570 * 43.97635 * 4 3 2 24 24 H 1.09003 * 110.24315 * 281.98235 * 4 3 2 25 25 H 1.09008 * 110.96665 * 267.29588 * 5 4 3 26 26 H 1.08997 * 110.97408 * 143.53445 * 5 4 3 27 27 H 1.09006 * 109.46779 * 264.47658 * 9 8 6 28 28 H 1.08994 * 109.47543 * 144.47789 * 9 8 6 29 29 H 1.09004 * 109.47036 * 24.47300 * 9 8 6 30 30 H 0.96996 * 119.99876 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2936 0.0000 4 6 2.3419 2.0501 1.2116 5 6 3.3126 3.1590 0.7486 6 6 2.9194 3.3217 -0.7380 7 1 2.1869 4.1206 -0.8536 8 7 4.1047 3.5924 -1.5552 9 6 5.2183 2.6406 -1.5686 10 6 4.1718 4.7352 -2.3067 11 1 3.2641 5.2199 -2.6346 12 6 5.4066 5.2706 -2.6471 13 7 6.5121 4.6381 -2.3153 14 14 5.4989 6.8886 -3.5760 15 1 5.5567 8.0129 -2.6075 16 1 6.7175 6.9033 -4.4246 17 1 4.2961 7.0360 -4.4343 18 6 2.3117 1.9879 -1.1123 19 8 2.1294 1.6015 -2.2473 20 1 -0.3632 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8899 23 1 2.8300 1.4007 1.9383 24 1 1.4432 2.4914 1.6427 25 1 4.3490 2.8352 0.8447 26 1 3.1414 4.0830 1.3008 27 1 5.9736 2.9550 -0.8482 28 1 5.6579 2.6094 -2.5655 29 1 4.8521 1.6492 -1.3017 30 1 7.3749 5.0124 -2.5528 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929491134.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:32 Heat of formation + Delta-G solvation = -13.102203 kcal Electronic energy + Delta-G solvation = -14948.176734 eV Core-core repulsion = 12360.317987 eV Total energy + Delta-G solvation = -2587.858747 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.29927 -38.17713 -37.63475 -36.14089 -33.11635 -30.45377 -28.38383 -27.92432 -27.44974 -24.36468 -22.42813 -20.84586 -19.06467 -18.78505 -17.60135 -17.05644 -16.59938 -15.81570 -15.76547 -15.15949 -14.94084 -14.70581 -14.56646 -13.91526 -13.57144 -13.19455 -12.84608 -12.70803 -12.59342 -12.49463 -12.11564 -12.00635 -11.83257 -11.70156 -10.87118 -10.55862 -9.97403 -8.83641 -7.87055 -5.38269 0.78735 1.44222 1.50919 1.51688 1.60868 2.50401 3.26101 3.38803 3.60123 3.68831 3.89350 4.19689 4.22822 4.35439 4.36503 4.59744 4.64207 4.69808 4.74950 5.14138 5.24464 5.33044 5.60379 5.68031 5.80288 5.94650 6.27406 7.07130 7.20884 7.74058 8.19515 9.17204 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.056771 B = 0.008239 C = 0.008030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.094841 B = 3397.599810 C = 3485.948411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.005 4.005 2 O -0.165 6.165 3 N -0.492 5.492 4 C 0.112 3.888 5 C -0.130 4.130 6 C 0.152 3.848 7 H 0.118 0.882 8 N -0.592 5.592 9 C 0.189 3.811 10 C -0.276 4.276 11 H 0.074 0.926 12 C -0.043 4.043 13 N -0.936 5.936 14 Si 0.979 3.021 15 H -0.274 1.274 16 H -0.295 1.295 17 H -0.274 1.274 18 C 0.492 3.508 19 O -0.569 6.569 20 H 0.033 0.967 21 H 0.130 0.870 22 H 0.076 0.924 23 H 0.101 0.899 24 H 0.108 0.892 25 H 0.072 0.928 26 H 0.123 0.877 27 H 0.024 0.976 28 H 0.019 0.981 29 H -0.002 1.002 30 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.009 -3.279 10.759 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 O -0.165 6.165 3 N -0.275 5.275 4 C -0.007 4.007 5 C -0.170 4.170 6 C 0.040 3.960 7 H 0.136 0.864 8 N -0.314 5.314 9 C 0.044 3.956 10 C -0.405 4.405 11 H 0.092 0.908 12 C -0.239 4.239 13 N -0.582 5.582 14 Si 0.806 3.194 15 H -0.200 1.200 16 H -0.222 1.222 17 H -0.199 1.199 18 C 0.279 3.721 19 O -0.446 6.446 20 H 0.052 0.948 21 H 0.148 0.852 22 H 0.095 0.905 23 H 0.120 0.880 24 H 0.126 0.874 25 H 0.091 0.909 26 H 0.141 0.859 27 H 0.042 0.958 28 H 0.038 0.962 29 H 0.016 0.984 30 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -9.845 -3.711 10.115 14.595 hybrid contribution 0.040 0.351 -0.918 0.983 sum -9.805 -3.360 9.198 13.857 Atomic orbital electron populations 1.23515 0.79937 1.05350 1.01393 1.90579 1.22158 1.07007 1.96790 1.50881 1.58694 1.09114 1.08838 1.22567 1.00287 0.92532 0.85303 1.23132 0.99614 0.99840 0.94411 1.21214 0.90775 0.91348 0.92710 0.86446 1.43889 1.14965 1.21579 1.50951 1.20518 0.88773 0.87118 0.99160 1.19587 0.92828 1.00732 1.27356 0.90835 1.25916 0.95097 1.01500 1.01338 1.70254 0.97252 1.39440 1.51240 0.85113 0.76861 0.79580 0.77874 1.20007 1.22164 1.19861 1.23447 0.76591 0.88265 0.83777 1.90598 1.55948 1.74497 1.23536 0.94838 0.85188 0.90534 0.88044 0.87411 0.90899 0.85867 0.95812 0.96217 0.98390 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.11 11.47 113.37 1.30 1.19 16 2 O -0.16 -5.34 11.80 -31.56 -0.37 -5.71 16 3 N -0.49 -16.61 3.53 -459.52 -1.62 -18.23 16 4 C 0.11 2.60 7.66 86.83 0.67 3.27 16 5 C -0.13 -3.78 6.77 31.65 0.21 -3.57 16 6 C 0.15 6.13 3.41 44.98 0.15 6.28 16 7 H 0.12 4.38 7.93 -2.39 -0.02 4.36 16 8 N -0.59 -30.57 2.91 -702.80 -2.04 -32.61 16 9 C 0.19 10.05 7.71 127.77 0.99 11.04 16 10 C -0.28 -15.31 9.61 84.03 0.81 -14.50 16 11 H 0.07 3.95 7.82 -2.91 -0.02 3.93 16 12 C -0.04 -2.41 5.38 84.86 0.46 -1.96 16 13 N -0.94 -54.95 10.13 21.65 0.22 -54.73 16 14 Si 0.98 44.71 29.56 68.60 2.03 46.73 16 15 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 16 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 C 0.49 21.15 6.74 87.86 0.59 21.74 16 19 O -0.57 -30.22 17.99 4.21 0.08 -30.15 16 20 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 21 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 23 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 24 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 2.41 7.14 -2.38 -0.02 2.39 16 26 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.02 1.28 7.41 -2.38 -0.02 1.27 16 28 H 0.02 1.15 7.03 -2.39 -0.02 1.13 16 29 H 0.00 -0.12 7.20 -2.38 -0.02 -0.14 16 30 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 Total: -1.00 -74.34 257.66 4.59 -69.76 By element: Atomic # 1 Polarization: 0.32 SS G_CDS: 1.12 Total: 1.44 kcal Atomic # 6 Polarization: 18.32 SS G_CDS: 5.17 Total: 23.50 kcal Atomic # 7 Polarization: -102.13 SS G_CDS: -3.44 Total: -105.57 kcal Atomic # 8 Polarization: -35.56 SS G_CDS: -0.30 Total: -35.86 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -74.34 4.59 -69.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929491134.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.657 kcal (2) G-P(sol) polarization free energy of solvation -74.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds