Wall clock time and date at job start Mon Mar 30 2020 02:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41597 * 114.00106 * 2 1 4 4 C 1.46758 * 124.35018 * 89.99652 * 3 2 1 5 5 C 1.54478 * 105.47191 * 162.98025 * 4 3 2 6 6 C 1.54631 * 101.76701 * 25.41744 * 5 4 3 7 7 H 1.08991 * 110.48611 * 216.38894 * 6 5 4 8 8 N 1.46501 * 110.48540 * 93.87587 * 6 5 4 9 9 C 1.46503 * 120.00312 * 301.84265 * 8 6 5 10 10 C 1.36942 * 119.99588 * 121.84443 * 8 6 5 11 11 H 1.08000 * 119.99790 * 339.92797 * 10 8 6 12 12 C 1.38810 * 119.99786 * 159.93158 * 10 8 6 13 13 N 1.31620 * 120.00322 * 343.95003 * 12 10 8 14 14 Si 1.86806 * 119.99995 * 163.94914 * 12 10 8 15 15 H 1.48498 * 109.46854 * 84.89079 * 14 12 10 16 16 H 1.48495 * 109.47119 * 324.89057 * 14 12 10 17 17 H 1.48494 * 109.47073 * 204.88708 * 14 12 10 18 18 C 1.34741 * 124.29806 * 269.95712 * 3 2 1 19 19 O 1.21283 * 125.12539 * 0.41975 * 18 3 2 20 20 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47199 * 300.00336 * 1 2 3 22 22 H 1.09004 * 109.46432 * 60.00093 * 1 2 3 23 23 H 1.08998 * 110.25031 * 43.98337 * 4 3 2 24 24 H 1.08994 * 110.24697 * 281.97907 * 4 3 2 25 25 H 1.09002 * 110.97171 * 267.29251 * 5 4 3 26 26 H 1.09005 * 110.96828 * 143.53706 * 5 4 3 27 27 H 1.08991 * 109.46788 * 265.68113 * 9 8 6 28 28 H 1.08995 * 109.46946 * 25.68752 * 9 8 6 29 29 H 1.09003 * 109.47018 * 145.68092 * 9 8 6 30 30 H 0.96994 * 120.00374 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3418 2.0501 1.2116 5 6 3.3125 3.1589 0.7486 6 6 2.9193 3.3218 -0.7380 7 1 3.8008 3.5256 -1.3456 8 7 1.9323 4.3933 -0.8928 9 6 0.6559 4.3226 -0.1773 10 6 2.2030 5.4611 -1.7064 11 1 3.2239 5.6917 -1.9730 12 6 1.1653 6.2470 -2.1883 13 7 -0.0734 5.8049 -2.1378 14 14 1.5268 7.9323 -2.9087 15 1 1.8969 7.7898 -4.3397 16 1 2.6510 8.5570 -2.1664 17 1 0.3199 8.7895 -2.7926 18 6 2.3146 1.9868 -1.1131 19 8 2.1354 1.6000 -2.2486 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 2.8300 1.4007 1.9383 24 1 1.4432 2.4913 1.6427 25 1 4.3489 2.8352 0.8448 26 1 3.1412 4.0829 1.3009 27 1 -0.0985 3.8743 -0.8238 28 1 0.7749 3.7137 0.7188 29 1 0.3416 5.3273 0.1053 30 1 -0.7985 6.3543 -2.4742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929491138.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:34 Heat of formation + Delta-G solvation = 11.095407 kcal Electronic energy + Delta-G solvation = -15161.041388 eV Core-core repulsion = 12574.231928 eV Total energy + Delta-G solvation = -2586.809460 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.74134 -36.59326 -36.05840 -34.23031 -31.14934 -28.96533 -27.11264 -26.26147 -25.75779 -22.54904 -20.99306 -19.26291 -17.28070 -17.10616 -16.26502 -15.33312 -14.75374 -14.34170 -14.11434 -13.56803 -13.44899 -13.19330 -12.58600 -12.39885 -11.98051 -11.78072 -11.50377 -11.09506 -10.80157 -10.64172 -10.35896 -10.31270 -10.05224 -10.00784 -9.15597 -8.62291 -8.44882 -6.96347 -5.86281 -3.30743 2.21143 3.21360 3.35260 3.40838 3.43330 4.41073 4.81084 5.08216 5.09400 5.17852 5.41575 5.46279 5.46966 5.55081 5.60849 5.74484 5.84965 6.10299 6.32575 6.48467 6.63954 7.17067 7.24735 7.50782 7.57986 7.70531 8.20589 8.85990 9.05823 9.66198 10.12536 11.18466 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.045651 B = 0.009483 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.199889 B = 2951.967617 C = 3093.102826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.149 6.149 3 N -0.492 5.492 4 C 0.108 3.892 5 C -0.146 4.146 6 C 0.157 3.843 7 H 0.106 0.894 8 N -0.565 5.565 9 C 0.152 3.848 10 C -0.265 4.265 11 H 0.078 0.922 12 C 0.007 3.993 13 N -0.900 5.900 14 Si 0.912 3.088 15 H -0.284 1.284 16 H -0.277 1.277 17 H -0.289 1.289 18 C 0.500 3.500 19 O -0.519 6.519 20 H 0.097 0.903 21 H 0.048 0.952 22 H 0.053 0.947 23 H 0.074 0.926 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.099 0.901 27 H 0.028 0.972 28 H 0.009 0.991 29 H 0.053 0.947 30 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.041 -5.323 8.823 10.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.149 6.149 3 N -0.277 5.277 4 C -0.013 4.013 5 C -0.187 4.187 6 C 0.044 3.956 7 H 0.124 0.876 8 N -0.287 5.287 9 C 0.008 3.992 10 C -0.394 4.394 11 H 0.096 0.904 12 C -0.193 4.193 13 N -0.543 5.543 14 Si 0.741 3.259 15 H -0.211 1.211 16 H -0.203 1.203 17 H -0.215 1.215 18 C 0.287 3.713 19 O -0.391 6.391 20 H 0.115 0.885 21 H 0.067 0.933 22 H 0.072 0.928 23 H 0.092 0.908 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.117 0.883 27 H 0.046 0.954 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.822 -5.689 8.125 10.312 hybrid contribution -0.598 0.624 -0.411 0.957 sum 2.224 -5.065 7.713 9.492 Atomic orbital electron populations 1.23246 0.82462 1.02827 1.01392 1.90580 1.19589 1.08002 1.96689 1.51109 1.59160 1.09203 1.08260 1.22301 0.99240 0.93017 0.86763 1.23223 0.98306 0.98299 0.98837 1.21172 0.95112 0.84393 0.94956 0.87634 1.44113 1.15991 1.17434 1.51165 1.21040 0.86576 0.99789 0.91844 1.19315 0.92832 1.01932 1.25293 0.90428 1.25095 0.95555 1.00094 0.98569 1.70112 0.98950 1.36326 1.48897 0.86164 0.77259 0.83328 0.79111 1.21103 1.20265 1.21483 1.23527 0.78090 0.85869 0.83793 1.90630 1.54740 1.72416 1.21276 0.88487 0.93322 0.92789 0.90789 0.91164 0.90079 0.88282 0.95366 0.97308 0.92845 0.93392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.02 11.47 101.05 1.16 1.14 16 2 O -0.15 -2.75 11.80 -18.88 -0.22 -2.97 16 3 N -0.49 -9.40 3.53 -59.13 -0.21 -9.60 16 4 C 0.11 1.60 6.87 -3.13 -0.02 1.58 16 5 C -0.15 -2.20 6.41 -25.10 -0.16 -2.36 16 6 C 0.16 3.25 3.50 -67.94 -0.24 3.01 16 7 H 0.11 2.13 7.91 -51.93 -0.41 1.72 16 8 N -0.57 -13.86 2.87 -173.50 -0.50 -14.36 16 9 C 0.15 3.60 8.26 59.85 0.49 4.10 16 10 C -0.26 -7.11 9.62 -15.06 -0.14 -7.25 16 11 H 0.08 1.99 7.84 -52.49 -0.41 1.58 16 12 C 0.01 0.18 5.04 -17.43 -0.09 0.09 16 13 N -0.90 -26.11 10.72 55.49 0.59 -25.51 16 14 Si 0.91 21.39 29.58 -169.99 -5.03 16.36 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 18 C 0.50 11.35 7.31 -10.72 -0.08 11.27 16 19 O -0.52 -14.05 18.00 -1.86 -0.03 -14.09 16 20 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 24 H 0.07 1.02 6.14 -51.93 -0.32 0.70 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 1.45 8.08 -51.93 -0.42 1.03 16 27 H 0.03 0.76 7.45 -51.93 -0.39 0.38 16 28 H 0.01 0.17 4.61 -51.93 -0.24 -0.07 16 29 H 0.05 1.34 7.17 -51.93 -0.37 0.97 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 254.51 15.07 3.84 3.84 Total: -1.00 -33.24 254.51 -4.45 -37.69 By element: Atomic # 1 Polarization: 0.87 SS G_CDS: -3.81 Total: -2.94 kcal Atomic # 6 Polarization: 10.66 SS G_CDS: 0.92 Total: 11.58 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: -0.11 Total: -49.47 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.26 Total: -17.06 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.03 Total: 16.36 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -33.24 -4.45 -37.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929491138.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.782 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds