Wall clock time and date at job start Mon Mar 30 2020 02:27:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 N 1.41597 * 114.00106 * 2 1 4 4 C 1.46758 * 124.35018 * 89.99652 * 3 2 1 5 5 C 1.54478 * 105.47191 * 162.98025 * 4 3 2 6 6 C 1.54631 * 101.76701 * 25.41744 * 5 4 3 7 7 H 1.08991 * 110.48611 * 216.38894 * 6 5 4 8 8 N 1.46501 * 110.48540 * 93.87587 * 6 5 4 9 9 C 1.46503 * 120.00312 * 301.84265 * 8 6 5 10 10 C 1.36942 * 119.99588 * 121.84443 * 8 6 5 11 11 H 1.08000 * 119.99790 * 339.92797 * 10 8 6 12 12 C 1.38810 * 119.99786 * 159.93158 * 10 8 6 13 13 N 1.31620 * 120.00322 * 343.95003 * 12 10 8 14 14 Si 1.86806 * 119.99995 * 163.94914 * 12 10 8 15 15 H 1.48498 * 109.46854 * 84.89079 * 14 12 10 16 16 H 1.48495 * 109.47119 * 324.89057 * 14 12 10 17 17 H 1.48494 * 109.47073 * 204.88708 * 14 12 10 18 18 C 1.34741 * 124.29806 * 269.95712 * 3 2 1 19 19 O 1.21283 * 125.12539 * 0.41975 * 18 3 2 20 20 H 1.08996 * 109.47148 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.47199 * 300.00336 * 1 2 3 22 22 H 1.09004 * 109.46432 * 60.00093 * 1 2 3 23 23 H 1.08998 * 110.25031 * 43.98337 * 4 3 2 24 24 H 1.08994 * 110.24697 * 281.97907 * 4 3 2 25 25 H 1.09002 * 110.97171 * 267.29251 * 5 4 3 26 26 H 1.09005 * 110.96828 * 143.53706 * 5 4 3 27 27 H 1.08991 * 109.46788 * 265.68113 * 9 8 6 28 28 H 1.08995 * 109.46946 * 25.68752 * 9 8 6 29 29 H 1.09003 * 109.47018 * 145.68092 * 9 8 6 30 30 H 0.96994 * 120.00374 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0050 1.2935 0.0000 4 6 2.3418 2.0501 1.2116 5 6 3.3125 3.1589 0.7486 6 6 2.9193 3.3218 -0.7380 7 1 3.8008 3.5256 -1.3456 8 7 1.9323 4.3933 -0.8928 9 6 0.6559 4.3226 -0.1773 10 6 2.2030 5.4611 -1.7064 11 1 3.2239 5.6917 -1.9730 12 6 1.1653 6.2470 -2.1883 13 7 -0.0734 5.8049 -2.1378 14 14 1.5268 7.9323 -2.9087 15 1 1.8969 7.7898 -4.3397 16 1 2.6510 8.5570 -2.1664 17 1 0.3199 8.7895 -2.7926 18 6 2.3146 1.9868 -1.1131 19 8 2.1354 1.6000 -2.2486 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3632 0.5139 -0.8901 23 1 2.8300 1.4007 1.9383 24 1 1.4432 2.4913 1.6427 25 1 4.3489 2.8352 0.8448 26 1 3.1412 4.0829 1.3009 27 1 -0.0985 3.8743 -0.8238 28 1 0.7749 3.7137 0.7188 29 1 0.3416 5.3273 0.1053 30 1 -0.7985 6.3543 -2.4742 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929491138.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:33 Heat of formation + Delta-G solvation = -12.869911 kcal Electronic energy + Delta-G solvation = -15162.080603 eV Core-core repulsion = 12574.231928 eV Total energy + Delta-G solvation = -2587.848674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.36022 -38.11947 -37.86272 -35.96503 -33.05361 -30.48632 -28.77788 -27.79963 -27.45955 -24.33369 -22.46696 -20.90759 -19.08973 -18.77331 -17.95319 -16.83893 -16.45306 -15.96127 -15.76843 -15.15949 -14.98998 -14.94624 -14.34865 -13.90424 -13.79773 -13.23342 -12.94651 -12.84023 -12.59118 -12.30010 -12.02336 -11.98513 -11.81882 -11.75916 -10.93041 -10.60204 -9.97139 -8.93341 -7.90942 -5.39016 0.77443 1.44553 1.49654 1.52160 1.60792 2.49737 3.22029 3.42817 3.58866 3.61725 3.81107 4.17082 4.22041 4.30042 4.34112 4.47016 4.59795 4.72884 4.82983 5.12970 5.22165 5.27429 5.52016 5.64338 5.79743 5.95331 6.21954 7.02516 7.19206 7.70715 8.12638 9.12468 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.045651 B = 0.009483 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.199889 B = 2951.967617 C = 3093.102826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.001 4.001 2 O -0.159 6.159 3 N -0.489 5.489 4 C 0.103 3.897 5 C -0.125 4.125 6 C 0.146 3.854 7 H 0.104 0.896 8 N -0.583 5.583 9 C 0.171 3.829 10 C -0.273 4.273 11 H 0.086 0.914 12 C -0.053 4.053 13 N -0.939 5.939 14 Si 0.979 3.021 15 H -0.289 1.289 16 H -0.259 1.259 17 H -0.293 1.293 18 C 0.489 3.511 19 O -0.580 6.580 20 H 0.137 0.863 21 H 0.069 0.931 22 H 0.019 0.981 23 H 0.117 0.883 24 H 0.078 0.922 25 H 0.119 0.881 26 H 0.111 0.889 27 H -0.017 1.017 28 H 0.050 0.950 29 H 0.032 0.968 30 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.378 -5.630 11.080 13.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 O -0.160 6.160 3 N -0.271 5.271 4 C -0.016 4.016 5 C -0.165 4.165 6 C 0.034 3.966 7 H 0.122 0.878 8 N -0.305 5.305 9 C 0.026 3.974 10 C -0.402 4.402 11 H 0.104 0.896 12 C -0.248 4.248 13 N -0.585 5.585 14 Si 0.806 3.194 15 H -0.216 1.216 16 H -0.183 1.183 17 H -0.220 1.220 18 C 0.277 3.723 19 O -0.457 6.457 20 H 0.155 0.845 21 H 0.087 0.913 22 H 0.038 0.962 23 H 0.135 0.865 24 H 0.096 0.904 25 H 0.137 0.863 26 H 0.129 0.871 27 H 0.001 0.999 28 H 0.069 0.931 29 H 0.051 0.949 30 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.198 -6.009 10.461 12.774 hybrid contribution -0.989 0.545 -1.054 1.545 sum 3.209 -5.465 9.407 11.342 Atomic orbital electron populations 1.23444 0.80559 1.05234 1.00646 1.90535 1.21450 1.07242 1.96753 1.51016 1.58104 1.09242 1.08763 1.22659 0.99971 0.93281 0.85646 1.23148 1.00476 0.99098 0.93748 1.21461 0.93758 0.82429 0.98977 0.87843 1.44283 1.16647 1.18399 1.51191 1.20745 0.85524 0.98803 0.92280 1.19759 0.93204 1.02673 1.24575 0.89598 1.25942 0.95445 1.03719 0.99731 1.70300 0.99785 1.37489 1.50892 0.85130 0.77241 0.79065 0.78007 1.21560 1.18337 1.21954 1.23751 0.77925 0.86954 0.83672 1.90586 1.57291 1.74056 1.23809 0.84538 0.91268 0.96191 0.86452 0.90365 0.86269 0.87091 0.99887 0.93142 0.94902 0.94089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.04 11.47 113.37 1.30 1.26 16 2 O -0.16 -5.56 11.80 -31.69 -0.37 -5.94 16 3 N -0.49 -17.64 3.53 -459.40 -1.62 -19.26 16 4 C 0.10 2.61 6.87 86.83 0.60 3.21 16 5 C -0.13 -3.25 6.41 31.65 0.20 -3.04 16 6 C 0.15 5.84 3.50 44.98 0.16 6.00 16 7 H 0.10 4.11 7.91 -2.39 -0.02 4.09 16 8 N -0.58 -28.51 2.87 -702.84 -2.02 -30.53 16 9 C 0.17 8.17 8.26 127.77 1.05 9.23 16 10 C -0.27 -14.70 9.62 84.03 0.81 -13.89 16 11 H 0.09 4.36 7.84 -2.91 -0.02 4.34 16 12 C -0.05 -2.95 5.04 84.86 0.43 -2.53 16 13 N -0.94 -56.37 10.72 21.65 0.23 -56.13 16 14 Si 0.98 44.51 29.58 68.60 2.03 46.54 16 15 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 16 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 17 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 18 C 0.49 22.10 7.31 87.85 0.64 22.74 16 19 O -0.58 -32.45 18.00 4.05 0.07 -32.38 16 20 H 0.14 2.82 8.14 -2.39 -0.02 2.80 16 21 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.02 0.70 8.14 -2.38 -0.02 0.68 16 23 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.08 1.90 6.14 -2.39 -0.01 1.89 16 25 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 26 H 0.11 2.73 8.08 -2.38 -0.02 2.71 16 27 H -0.02 -0.98 7.45 -2.39 -0.02 -1.00 16 28 H 0.05 1.92 4.61 -2.39 -0.01 1.91 16 29 H 0.03 1.66 7.17 -2.39 -0.02 1.65 16 30 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 Total: -1.00 -75.89 254.51 4.65 -71.25 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: 1.13 Total: 3.47 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 5.19 Total: 22.98 kcal Atomic # 7 Polarization: -102.52 SS G_CDS: -3.40 Total: -105.92 kcal Atomic # 8 Polarization: -38.01 SS G_CDS: -0.30 Total: -38.32 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -75.89 4.65 -71.25 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929491138.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.377 kcal (2) G-P(sol) polarization free energy of solvation -75.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds