Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36930 * 120.00381 * 2 1 4 4 H 1.08007 * 120.00030 * 322.07723 * 3 2 1 5 5 C 1.38815 * 120.00154 * 142.07605 * 3 2 1 6 6 N 1.31623 * 119.99712 * 157.27333 * 5 3 2 7 7 Si 1.86794 * 119.99721 * 337.26871 * 5 3 2 8 8 H 1.48500 * 109.47211 * 95.77988 * 7 5 3 9 9 H 1.48498 * 109.46950 * 215.77896 * 7 5 3 10 10 H 1.48499 * 109.47339 * 335.77993 * 7 5 3 11 11 C 1.46505 * 119.99673 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46934 * 89.99719 * 11 2 1 13 13 H 1.09002 * 110.42415 * 182.50967 * 12 11 2 14 14 N 1.47169 * 110.47821 * 305.16096 * 12 11 2 15 15 C 1.34543 * 106.85637 * 118.69367 * 14 12 11 16 16 O 1.21589 * 124.16212 * 180.02562 * 15 14 12 17 17 N 1.33953 * 111.67608 * 0.02562 * 15 14 12 18 18 C 1.46505 * 124.46774 * 180.02562 * 17 15 14 19 19 N 1.36550 * 111.06018 * 359.97438 * 17 15 14 20 20 H 1.08999 * 109.46618 * 272.42511 * 1 2 3 21 21 H 1.08999 * 109.46710 * 32.42581 * 1 2 3 22 22 H 1.09003 * 109.47124 * 152.42354 * 1 2 3 23 23 H 0.96999 * 119.99369 * 179.97438 * 6 5 3 24 24 H 1.08999 * 109.47072 * 209.99732 * 11 2 1 25 25 H 1.08997 * 109.47003 * 330.00187 * 11 2 1 26 26 H 0.97003 * 126.56761 * 298.69532 * 14 12 11 27 27 H 1.08997 * 109.47318 * 269.98107 * 18 17 15 28 28 H 1.09008 * 109.47140 * 29.97973 * 18 17 15 29 29 H 1.09004 * 109.47092 * 149.97617 * 18 17 15 30 30 H 1.00907 * 110.99710 * 120.71466 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7809 2.0224 -0.5749 5 6 3.3181 1.3127 0.7389 6 7 4.2025 2.2334 0.4186 7 14 3.6349 0.1769 2.1876 8 1 4.4766 -0.9644 1.7470 9 1 4.3385 0.9262 3.2593 10 1 2.3414 -0.3340 2.7082 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 1 2.9581 -2.6753 -1.4622 14 7 1.1878 -1.7734 -2.1933 15 6 1.2889 -0.8912 -3.2041 16 8 0.4138 -0.6884 -4.0235 17 7 2.4723 -0.2637 -3.1966 18 6 2.8782 0.7525 -4.1708 19 7 3.2500 -0.6953 -2.1605 20 1 -0.3632 0.0435 1.0268 21 1 -0.3633 0.8675 -0.5511 22 1 -0.3633 -0.9109 -0.4757 23 1 5.0187 2.3223 0.9352 24 1 3.1499 -1.1387 0.5133 25 1 1.6084 -2.0286 0.5129 26 1 0.4271 -2.3423 -1.9966 27 1 3.3723 0.2704 -5.0143 28 1 1.9978 1.2895 -4.5239 29 1 3.5665 1.4538 -3.6989 30 1 4.1160 -1.0885 -2.4978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067756.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 69.908517 kcal Electronic energy + Delta-G solvation = -15570.931337 eV Core-core repulsion = 13018.964956 eV Total energy + Delta-G solvation = -2551.966381 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.117 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.89659 -36.70346 -35.47089 -33.57325 -31.35816 -30.24019 -28.10466 -26.11939 -25.35638 -22.39455 -20.82246 -20.32209 -17.87180 -16.78648 -16.16249 -15.43787 -15.20944 -14.47861 -14.27171 -13.92392 -13.47658 -12.94015 -12.69375 -12.58188 -12.25220 -11.90217 -11.64666 -11.20713 -10.67347 -10.43593 -10.29052 -10.09647 -9.65432 -9.49846 -8.91692 -8.34916 -7.28426 -6.64597 -5.83581 -3.21367 2.93018 3.32178 3.51303 3.55268 3.58788 3.99148 4.62525 4.91844 4.97958 5.46027 5.59643 5.68643 5.78400 5.81186 6.15045 6.21655 6.29275 6.39004 6.50728 6.65056 6.72934 6.77830 7.32569 7.77798 8.17780 8.49589 8.52736 9.05669 9.08850 9.86271 10.23666 11.33249 Molecular weight = 214.12amu Principal moments of inertia in cm(-1) A = 0.035408 B = 0.013796 C = 0.012246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.598307 B = 2029.138195 C = 2285.823680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.130 3.870 2 N -0.594 5.594 3 C -0.236 4.236 4 H 0.070 0.930 5 C 0.043 3.957 6 N -0.899 5.899 7 Si 0.869 3.131 8 H -0.289 1.289 9 H -0.305 1.305 10 H -0.274 1.274 11 C 0.138 3.862 12 C 0.261 3.739 13 H 0.061 0.939 14 N -0.744 5.744 15 C 0.697 3.303 16 O -0.601 6.601 17 N -0.471 5.471 18 C 0.135 3.865 19 N -0.395 5.395 20 H 0.006 0.994 21 H 0.037 0.963 22 H 0.026 0.974 23 H 0.258 0.742 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.427 0.573 27 H 0.044 0.956 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.322 0.678 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 -8.703 -3.967 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.015 4.015 2 N -0.317 5.317 3 C -0.365 4.365 4 H 0.088 0.912 5 C -0.156 4.156 6 N -0.541 5.541 7 Si 0.700 3.300 8 H -0.217 1.217 9 H -0.233 1.233 10 H -0.200 1.200 11 C 0.009 3.991 12 C 0.062 3.938 13 H 0.078 0.922 14 N -0.408 5.408 15 C 0.397 3.603 16 O -0.479 6.479 17 N -0.297 5.297 18 C -0.007 4.007 19 N -0.119 5.119 20 H 0.024 0.976 21 H 0.055 0.945 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.269 0.731 27 H 0.063 0.937 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -1.158 -7.792 -4.033 8.850 hybrid contribution 0.247 -1.706 0.566 1.814 sum -0.911 -9.497 -3.467 10.151 Atomic orbital electron populations 1.21056 0.84665 0.98612 0.97202 1.43778 1.00386 1.01670 1.85894 1.18514 1.05559 0.89827 1.22551 0.91210 1.25271 0.96667 0.96036 0.97628 1.69888 1.08452 1.36295 1.39449 0.87073 0.77519 0.80255 0.85139 1.21705 1.23281 1.19951 1.21574 0.97569 0.88993 0.90962 1.23735 0.81647 0.92317 0.96104 0.92186 1.45488 1.19438 1.44635 1.31220 1.16035 0.83069 0.79398 0.81840 1.90895 1.42900 1.70563 1.43498 1.46132 1.13917 1.40892 1.28776 1.21365 1.01524 0.89347 0.88505 1.64118 1.01410 1.34866 1.11460 0.97635 0.94461 0.95502 0.93222 0.91111 0.93226 0.73131 0.93742 0.90435 0.89507 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 2.69 10.31 59.85 0.62 3.30 16 2 N -0.59 -13.72 2.29 -181.11 -0.41 -14.13 16 3 C -0.24 -6.41 9.23 -15.06 -0.14 -6.55 16 4 H 0.07 2.16 8.06 -52.48 -0.42 1.73 16 5 C 0.04 1.20 5.29 -17.43 -0.09 1.11 16 6 N -0.90 -26.52 13.97 55.49 0.78 -25.75 16 7 Si 0.87 21.36 25.08 -169.99 -4.26 17.10 16 8 H -0.29 -6.73 6.68 56.52 0.38 -6.35 16 9 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.14 2.74 4.73 -4.04 -0.02 2.72 16 12 C 0.26 4.48 4.63 -125.65 -0.58 3.90 16 13 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 14 N -0.74 -12.74 4.78 -61.08 -0.29 -13.03 16 15 C 0.70 14.13 8.73 -87.86 -0.77 13.36 16 16 O -0.60 -13.83 17.55 5.29 0.09 -13.74 16 17 N -0.47 -9.02 3.81 -72.36 -0.28 -9.30 16 18 C 0.13 2.21 11.18 59.85 0.67 2.88 16 19 N -0.39 -7.42 6.85 -6.64 -0.05 -7.46 16 20 H 0.01 0.11 8.14 -51.93 -0.42 -0.31 16 21 H 0.04 0.81 8.06 -51.93 -0.42 0.39 16 22 H 0.03 0.48 6.82 -51.93 -0.35 0.12 16 23 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 24 H 0.07 1.55 3.36 -51.93 -0.17 1.37 16 25 H 0.05 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.43 6.25 8.62 -40.82 -0.35 5.90 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.08 1.30 7.90 -51.92 -0.41 0.89 16 29 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 30 H 0.32 5.10 9.03 -181.39 -1.64 3.46 16 LS Contribution 250.11 15.07 3.77 3.77 Total: -1.00 -33.25 250.11 -6.01 -39.26 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.04 Total: 2.57 kcal Atomic # 6 Polarization: 21.03 SS G_CDS: -0.31 Total: 20.72 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -0.25 Total: -69.68 kcal Atomic # 8 Polarization: -13.83 SS G_CDS: 0.09 Total: -13.74 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.26 Total: 17.10 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -33.25 -6.01 -39.26 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067756.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.164 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds