Wall clock time and date at job start Mon Mar 30 2020 02:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36930 * 120.00381 * 2 1 4 4 H 1.08007 * 120.00030 * 322.07723 * 3 2 1 5 5 C 1.38815 * 120.00154 * 142.07605 * 3 2 1 6 6 N 1.31623 * 119.99712 * 157.27333 * 5 3 2 7 7 Si 1.86794 * 119.99721 * 337.26871 * 5 3 2 8 8 H 1.48500 * 109.47211 * 95.77988 * 7 5 3 9 9 H 1.48498 * 109.46950 * 215.77896 * 7 5 3 10 10 H 1.48499 * 109.47339 * 335.77993 * 7 5 3 11 11 C 1.46505 * 119.99673 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.46934 * 89.99719 * 11 2 1 13 13 H 1.09002 * 110.42415 * 182.50967 * 12 11 2 14 14 N 1.47169 * 110.47821 * 305.16096 * 12 11 2 15 15 C 1.34543 * 106.85637 * 118.69367 * 14 12 11 16 16 O 1.21589 * 124.16212 * 180.02562 * 15 14 12 17 17 N 1.33953 * 111.67608 * 0.02562 * 15 14 12 18 18 C 1.46505 * 124.46774 * 180.02562 * 17 15 14 19 19 N 1.36550 * 111.06018 * 359.97438 * 17 15 14 20 20 H 1.08999 * 109.46618 * 272.42511 * 1 2 3 21 21 H 1.08999 * 109.46710 * 32.42581 * 1 2 3 22 22 H 1.09003 * 109.47124 * 152.42354 * 1 2 3 23 23 H 0.96999 * 119.99369 * 179.97438 * 6 5 3 24 24 H 1.08999 * 109.47072 * 209.99732 * 11 2 1 25 25 H 1.08997 * 109.47003 * 330.00187 * 11 2 1 26 26 H 0.97003 * 126.56761 * 298.69532 * 14 12 11 27 27 H 1.08997 * 109.47318 * 269.98107 * 18 17 15 28 28 H 1.09008 * 109.47140 * 29.97973 * 18 17 15 29 29 H 1.09004 * 109.47092 * 149.97617 * 18 17 15 30 30 H 1.00907 * 110.99710 * 120.71466 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 1.7809 2.0224 -0.5749 5 6 3.3181 1.3127 0.7389 6 7 4.2025 2.2334 0.4186 7 14 3.6349 0.1769 2.1876 8 1 4.4766 -0.9644 1.7470 9 1 4.3385 0.9262 3.2593 10 1 2.3414 -0.3340 2.7082 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 1 2.9581 -2.6753 -1.4622 14 7 1.1878 -1.7734 -2.1933 15 6 1.2889 -0.8912 -3.2041 16 8 0.4138 -0.6884 -4.0235 17 7 2.4723 -0.2637 -3.1966 18 6 2.8782 0.7525 -4.1708 19 7 3.2500 -0.6953 -2.1605 20 1 -0.3632 0.0435 1.0268 21 1 -0.3633 0.8675 -0.5511 22 1 -0.3633 -0.9109 -0.4757 23 1 5.0187 2.3223 0.9352 24 1 3.1499 -1.1387 0.5133 25 1 1.6084 -2.0286 0.5129 26 1 0.4271 -2.3423 -1.9966 27 1 3.3723 0.2704 -5.0143 28 1 1.9978 1.2895 -4.5239 29 1 3.5665 1.4538 -3.6989 30 1 4.1160 -1.0885 -2.4978 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067756.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:44 Heat of formation + Delta-G solvation = 43.465608 kcal Electronic energy + Delta-G solvation = -15572.077987 eV Core-core repulsion = 13018.964956 eV Total energy + Delta-G solvation = -2553.113032 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.117 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.36203 -38.33652 -37.16599 -35.09274 -33.39827 -31.71935 -29.60615 -27.92383 -26.95518 -24.01915 -22.52100 -21.85168 -19.35905 -18.68521 -17.64275 -17.13828 -16.91910 -15.97472 -15.82950 -15.55562 -15.16505 -14.62938 -14.34863 -14.14729 -14.00817 -13.40866 -13.27012 -12.90783 -12.50846 -12.26062 -11.90312 -11.77629 -11.51878 -11.20045 -10.55591 -10.28331 -8.83593 -8.40590 -7.96385 -5.32263 1.39283 1.51815 1.55286 1.63498 2.07801 2.58329 2.64316 3.23081 3.50038 3.61296 4.19331 4.23246 4.39826 4.56333 4.66370 4.71986 4.80892 4.86633 5.00929 5.08972 5.13834 5.29611 5.96902 6.11794 6.34018 6.46538 7.07456 7.15603 7.57806 7.81472 8.21515 9.24477 Molecular weight = 214.12amu Principal moments of inertia in cm(-1) A = 0.035408 B = 0.013796 C = 0.012246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.598307 B = 2029.138195 C = 2285.823680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.132 3.868 2 N -0.607 5.607 3 C -0.220 4.220 4 H 0.014 0.986 5 C -0.004 4.004 6 N -0.946 5.946 7 Si 0.937 3.063 8 H -0.262 1.262 9 H -0.321 1.321 10 H -0.266 1.266 11 C 0.129 3.871 12 C 0.264 3.736 13 H 0.112 0.888 14 N -0.729 5.729 15 C 0.686 3.314 16 O -0.636 6.636 17 N -0.476 5.476 18 C 0.133 3.867 19 N -0.424 5.424 20 H 0.014 0.986 21 H 0.012 0.988 22 H 0.057 0.943 23 H 0.256 0.744 24 H 0.056 0.944 25 H 0.086 0.914 26 H 0.439 0.561 27 H 0.079 0.921 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 -11.486 -3.272 11.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.012 4.012 2 N -0.330 5.330 3 C -0.350 4.350 4 H 0.032 0.968 5 C -0.200 4.200 6 N -0.590 5.590 7 Si 0.767 3.233 8 H -0.189 1.189 9 H -0.251 1.251 10 H -0.191 1.191 11 C 0.001 3.999 12 C 0.066 3.934 13 H 0.129 0.871 14 N -0.393 5.393 15 C 0.385 3.615 16 O -0.517 6.517 17 N -0.301 5.301 18 C -0.009 4.009 19 N -0.149 5.149 20 H 0.032 0.968 21 H 0.031 0.969 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.074 0.926 25 H 0.104 0.896 26 H 0.283 0.717 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.003 -10.637 -3.332 11.192 hybrid contribution 0.170 -0.792 0.309 0.867 sum -0.833 -11.428 -3.024 11.851 Atomic orbital electron populations 1.21058 0.83489 0.99069 0.97626 1.43832 1.01238 1.01638 1.86310 1.18121 1.05435 0.90342 1.21151 0.96813 1.25759 0.96418 0.98077 0.99780 1.70029 1.09215 1.39051 1.40742 0.85976 0.77777 0.78832 0.80705 1.18898 1.25081 1.19112 1.21772 0.97023 0.88086 0.93000 1.23658 0.81696 0.93966 0.94041 0.87056 1.45387 1.20032 1.43864 1.30043 1.16272 0.82991 0.79938 0.82250 1.90863 1.44020 1.71813 1.45015 1.46285 1.13980 1.40938 1.28855 1.21463 1.01011 0.89267 0.89124 1.63871 1.02504 1.36555 1.11993 0.96767 0.96911 0.92432 0.93488 0.92610 0.89579 0.71663 0.90250 0.91562 0.90528 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.25 10.31 127.77 1.32 6.56 16 2 N -0.61 -26.92 2.29 -726.91 -1.66 -28.58 16 3 C -0.22 -12.10 9.23 84.04 0.78 -11.32 16 4 H 0.01 0.91 8.06 -2.91 -0.02 0.89 16 5 C 0.00 -0.25 5.29 84.86 0.45 0.20 16 6 N -0.95 -56.85 13.97 21.65 0.30 -56.54 16 7 Si 0.94 43.28 25.08 68.60 1.72 45.00 16 8 H -0.26 -10.92 6.68 99.48 0.66 -10.25 16 9 H -0.32 -15.64 7.11 99.48 0.71 -14.94 16 10 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 11 C 0.13 4.59 4.73 86.38 0.41 5.00 16 12 C 0.26 8.03 4.63 128.88 0.60 8.63 16 13 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 14 N -0.73 -22.64 4.78 -465.54 -2.22 -24.86 16 15 C 0.69 26.82 8.73 179.38 1.57 28.38 16 16 O -0.64 -28.96 17.55 -3.99 -0.07 -29.03 16 17 N -0.48 -17.67 3.81 -501.55 -1.91 -19.58 16 18 C 0.13 4.34 11.18 127.77 1.43 5.76 16 19 N -0.42 -15.01 6.85 -174.93 -1.20 -16.21 16 20 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 21 H 0.01 0.54 8.06 -2.39 -0.02 0.52 16 22 H 0.06 1.89 6.82 -2.39 -0.02 1.88 16 23 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 24 H 0.06 2.20 3.36 -2.39 -0.01 2.19 16 25 H 0.09 2.48 8.07 -2.39 -0.02 2.46 16 26 H 0.44 11.20 8.62 -92.71 -0.80 10.40 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.07 2.28 7.90 -2.38 -0.02 2.26 16 29 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 30 H 0.34 9.90 9.03 -210.58 -1.90 8.00 16 Total: -1.00 -72.80 250.11 -0.08 -72.88 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -1.58 Total: 13.71 kcal Atomic # 6 Polarization: 36.68 SS G_CDS: 6.54 Total: 43.22 kcal Atomic # 7 Polarization: -139.08 SS G_CDS: -6.69 Total: -145.78 kcal Atomic # 8 Polarization: -28.96 SS G_CDS: -0.07 Total: -29.03 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.72 Total: 45.00 kcal Total: -72.80 -0.08 -72.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067756.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.342 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds