Wall clock time and date at job start Mon Mar 30 2020 02:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00342 * 2 1 4 4 H 1.07993 * 120.00394 * 200.08665 * 3 2 1 5 5 C 1.38811 * 119.99622 * 20.07959 * 3 2 1 6 6 N 1.31620 * 120.00225 * 15.08799 * 5 3 2 7 7 Si 1.86800 * 120.00111 * 195.08067 * 5 3 2 8 8 H 1.48505 * 109.47083 * 84.99967 * 7 5 3 9 9 H 1.48492 * 109.47375 * 204.99865 * 7 5 3 10 10 H 1.48498 * 109.47024 * 325.00325 * 7 5 3 11 11 C 1.46501 * 120.00103 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47272 * 270.00096 * 11 2 1 13 13 H 1.08999 * 110.52971 * 181.12860 * 12 11 2 14 14 N 1.47165 * 110.47471 * 58.53972 * 12 11 2 15 15 C 1.34553 * 106.86049 * 241.06740 * 14 12 11 16 16 O 1.21585 * 124.16201 * 180.26605 * 15 14 12 17 17 N 1.33944 * 111.67368 * 0.24044 * 15 14 12 18 18 C 1.46499 * 124.46948 * 180.02562 * 17 15 14 19 19 N 1.36557 * 111.05942 * 0.02562 * 17 15 14 20 20 H 1.08999 * 109.46804 * 275.14960 * 1 2 3 21 21 H 1.08994 * 109.47120 * 35.15571 * 1 2 3 22 22 H 1.09003 * 109.46753 * 155.15647 * 1 2 3 23 23 H 0.96998 * 120.00251 * 180.02562 * 6 5 3 24 24 H 1.08998 * 109.47464 * 149.99962 * 11 2 1 25 25 H 1.09003 * 109.47337 * 29.99758 * 11 2 1 26 26 H 0.97001 * 126.56966 * 61.33469 * 14 12 11 27 27 H 1.09001 * 109.46908 * 359.97438 * 18 17 15 28 28 H 1.08999 * 109.47465 * 119.97725 * 18 17 15 29 29 H 1.09005 * 109.47449 * 239.98285 * 18 17 15 30 30 H 1.00905 * 111.00056 * 120.71521 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1805 1.2143 -0.3212 5 6 1.5190 2.3514 0.4127 6 7 0.3840 2.2862 1.0760 7 14 2.2810 4.0128 0.0270 8 1 1.8706 4.4416 -1.3342 9 1 1.8175 5.0130 1.0218 10 1 3.7609 3.9044 0.0867 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7111 1.4417 13 1 3.0148 -2.6447 1.4615 14 7 1.1807 -1.8606 2.1668 15 6 1.2115 -0.9900 3.1923 16 8 0.3135 -0.8556 4.0010 17 7 2.3533 -0.2901 3.2129 18 6 2.6809 0.7329 4.2092 19 7 3.1718 -0.6559 2.1828 20 1 -0.3633 0.0922 1.0235 21 1 -0.3633 0.8402 -0.5917 22 1 -0.3633 -0.9326 -0.4318 23 1 -0.0570 3.1006 1.3641 24 1 3.1500 -1.1382 -0.5143 25 1 1.6085 -2.0282 -0.5147 26 1 0.4601 -2.4725 1.9496 27 1 1.8570 0.8281 4.9165 28 1 3.5863 0.4437 4.7427 29 1 2.8429 1.6880 3.7095 30 1 3.3785 0.1324 1.5878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000953067757.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:46 Heat of formation + Delta-G solvation = 55.988562 kcal Electronic energy + Delta-G solvation = -15701.618720 eV Core-core repulsion = 13149.048724 eV Total energy + Delta-G solvation = -2552.569996 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.117 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.61634 -36.53334 -35.16143 -33.52802 -31.30870 -29.76664 -27.65150 -25.93109 -25.16466 -22.60409 -20.65848 -20.06985 -17.46632 -16.65058 -16.15417 -15.38673 -14.75258 -14.21911 -14.01572 -13.69262 -13.35013 -13.07415 -12.65422 -12.15553 -11.85898 -11.63646 -11.31435 -10.92819 -10.80289 -10.46695 -10.18052 -10.03208 -9.97980 -9.37021 -8.80368 -8.48641 -7.14661 -6.86690 -5.83407 -3.30297 3.23152 3.29941 3.37065 3.38889 4.01587 4.32222 4.40613 5.18682 5.26906 5.38145 5.68701 5.89097 6.01709 6.06748 6.24801 6.32543 6.38265 6.66181 6.75104 6.99115 7.29629 7.62210 7.64984 7.74226 8.06317 8.23608 8.78041 9.08193 9.39193 9.72618 10.20816 11.18594 Molecular weight = 214.12amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.014532 C = 0.012791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.916226 B = 1926.365628 C = 2188.471376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.597 5.597 3 C -0.280 4.280 4 H 0.071 0.929 5 C 0.013 3.987 6 N -0.885 5.885 7 Si 0.900 3.100 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.278 1.278 11 C 0.114 3.886 12 C 0.253 3.747 13 H 0.089 0.911 14 N -0.743 5.743 15 C 0.708 3.292 16 O -0.602 6.602 17 N -0.469 5.469 18 C 0.138 3.862 19 N -0.436 5.436 20 H 0.033 0.967 21 H 0.040 0.960 22 H -0.006 1.006 23 H 0.254 0.746 24 H 0.064 0.936 25 H 0.053 0.947 26 H 0.424 0.576 27 H 0.082 0.918 28 H 0.055 0.945 29 H 0.060 0.940 30 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.062 -5.749 0.111 7.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.320 5.320 3 C -0.409 4.409 4 H 0.088 0.912 5 C -0.188 4.188 6 N -0.528 5.528 7 Si 0.730 3.270 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C -0.016 4.016 12 C 0.053 3.947 13 H 0.106 0.894 14 N -0.406 5.406 15 C 0.407 3.593 16 O -0.480 6.480 17 N -0.295 5.295 18 C -0.005 4.005 19 N -0.166 5.166 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.012 0.988 23 H 0.065 0.935 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.265 0.735 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.078 0.922 30 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 4.948 -5.801 1.093 7.702 hybrid contribution -0.606 1.293 -1.059 1.778 sum 4.342 -4.508 0.033 6.259 Atomic orbital electron populations 1.20792 0.82213 0.95109 0.99629 1.43877 1.02038 1.00192 1.85870 1.19092 0.97033 0.85082 1.39688 0.91175 1.24994 0.97593 0.98283 0.97951 1.70123 1.18026 1.26994 1.37624 0.86359 0.78724 0.84152 0.77769 1.21421 1.21721 1.20384 1.21708 0.97389 0.89728 0.92786 1.23757 0.81836 0.94803 0.94309 0.89388 1.45363 1.21229 1.43206 1.30790 1.15892 0.81755 0.79825 0.81784 1.90867 1.39420 1.72860 1.44805 1.45935 1.16409 1.41232 1.25899 1.21265 1.00823 0.88888 0.89537 1.64418 1.30135 1.14086 1.07968 0.94844 0.94136 0.98765 0.93530 0.91775 0.92900 0.73483 0.89938 0.92687 0.92165 0.81772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.04 8.39 59.85 0.50 4.54 16 2 N -0.60 -13.71 2.75 -181.12 -0.50 -14.20 16 3 C -0.28 -6.97 7.47 -15.06 -0.11 -7.08 16 4 H 0.07 1.70 7.80 -52.49 -0.41 1.29 16 5 C 0.01 0.34 5.06 -17.43 -0.09 0.25 16 6 N -0.89 -24.86 10.66 55.49 0.59 -24.27 16 7 Si 0.90 20.82 29.58 -169.99 -5.03 15.80 16 8 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 9 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 C 0.11 2.07 5.77 -4.04 -0.02 2.05 16 12 C 0.25 4.43 4.78 -125.66 -0.60 3.83 16 13 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 14 N -0.74 -14.29 5.43 -61.08 -0.33 -14.62 16 15 C 0.71 16.29 8.69 -87.86 -0.76 15.53 16 16 O -0.60 -15.83 17.30 5.29 0.09 -15.74 16 17 N -0.47 -9.95 3.81 -72.36 -0.28 -10.22 16 18 C 0.14 2.55 11.37 59.85 0.68 3.23 16 19 N -0.44 -8.46 7.82 -6.65 -0.05 -8.51 16 20 H 0.03 0.92 7.33 -51.93 -0.38 0.54 16 21 H 0.04 1.07 7.20 -51.93 -0.37 0.69 16 22 H -0.01 -0.13 7.83 -51.93 -0.41 -0.54 16 23 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 24 H 0.06 1.09 8.03 -51.93 -0.42 0.68 16 25 H 0.05 0.86 7.86 -51.93 -0.41 0.46 16 26 H 0.42 7.23 8.96 -40.82 -0.37 6.86 16 27 H 0.08 1.56 7.49 -51.93 -0.39 1.17 16 28 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.36 7.51 5.94 -181.39 -1.08 6.44 16 LS Contribution 251.38 15.07 3.79 3.79 Total: -1.00 -31.21 251.38 -6.75 -37.96 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.63 Total: 7.66 kcal Atomic # 6 Polarization: 22.76 SS G_CDS: -0.40 Total: 22.35 kcal Atomic # 7 Polarization: -71.25 SS G_CDS: -0.57 Total: -71.82 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.09 Total: -15.74 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.80 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -31.21 -6.75 -37.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067757.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.945 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds