Wall clock time and date at job start Mon Mar 30 2020 02:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36935 * 120.00342 * 2 1 4 4 H 1.07993 * 120.00394 * 200.08665 * 3 2 1 5 5 C 1.38811 * 119.99622 * 20.07959 * 3 2 1 6 6 N 1.31620 * 120.00225 * 15.08799 * 5 3 2 7 7 Si 1.86800 * 120.00111 * 195.08067 * 5 3 2 8 8 H 1.48505 * 109.47083 * 84.99967 * 7 5 3 9 9 H 1.48492 * 109.47375 * 204.99865 * 7 5 3 10 10 H 1.48498 * 109.47024 * 325.00325 * 7 5 3 11 11 C 1.46501 * 120.00103 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47272 * 270.00096 * 11 2 1 13 13 H 1.08999 * 110.52971 * 181.12860 * 12 11 2 14 14 N 1.47165 * 110.47471 * 58.53972 * 12 11 2 15 15 C 1.34553 * 106.86049 * 241.06740 * 14 12 11 16 16 O 1.21585 * 124.16201 * 180.26605 * 15 14 12 17 17 N 1.33944 * 111.67368 * 0.24044 * 15 14 12 18 18 C 1.46499 * 124.46948 * 180.02562 * 17 15 14 19 19 N 1.36557 * 111.05942 * 0.02562 * 17 15 14 20 20 H 1.08999 * 109.46804 * 275.14960 * 1 2 3 21 21 H 1.08994 * 109.47120 * 35.15571 * 1 2 3 22 22 H 1.09003 * 109.46753 * 155.15647 * 1 2 3 23 23 H 0.96998 * 120.00251 * 180.02562 * 6 5 3 24 24 H 1.08998 * 109.47464 * 149.99962 * 11 2 1 25 25 H 1.09003 * 109.47337 * 29.99758 * 11 2 1 26 26 H 0.97001 * 126.56966 * 61.33469 * 14 12 11 27 27 H 1.09001 * 109.46908 * 359.97438 * 18 17 15 28 28 H 1.08999 * 109.47465 * 119.97725 * 18 17 15 29 29 H 1.09005 * 109.47449 * 239.98285 * 18 17 15 30 30 H 1.00905 * 111.00056 * 120.71521 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1805 1.2143 -0.3212 5 6 1.5190 2.3514 0.4127 6 7 0.3840 2.2862 1.0760 7 14 2.2810 4.0128 0.0270 8 1 1.8706 4.4416 -1.3342 9 1 1.8175 5.0130 1.0218 10 1 3.7609 3.9044 0.0867 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7111 1.4417 13 1 3.0148 -2.6447 1.4615 14 7 1.1807 -1.8606 2.1668 15 6 1.2115 -0.9900 3.1923 16 8 0.3135 -0.8556 4.0010 17 7 2.3533 -0.2901 3.2129 18 6 2.6809 0.7329 4.2092 19 7 3.1718 -0.6559 2.1828 20 1 -0.3633 0.0922 1.0235 21 1 -0.3633 0.8402 -0.5917 22 1 -0.3633 -0.9326 -0.4318 23 1 -0.0570 3.1006 1.3641 24 1 3.1500 -1.1382 -0.5143 25 1 1.6085 -2.0282 -0.5147 26 1 0.4601 -2.4725 1.9496 27 1 1.8570 0.8281 4.9165 28 1 3.5863 0.4437 4.7427 29 1 2.8429 1.6880 3.7095 30 1 3.3785 0.1324 1.5878 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000953067757.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:46 Heat of formation + Delta-G solvation = 32.119779 kcal Electronic energy + Delta-G solvation = -15702.653748 eV Core-core repulsion = 13149.048724 eV Total energy + Delta-G solvation = -2553.605024 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.117 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.23775 -38.31202 -36.96215 -35.15231 -33.15571 -31.41378 -29.24469 -27.88597 -26.78212 -24.32689 -22.30566 -21.72892 -19.16853 -18.45006 -17.77861 -17.10112 -16.55133 -15.90685 -15.69187 -15.35760 -15.09223 -14.81535 -14.27213 -13.74687 -13.62026 -13.20982 -13.07353 -12.78997 -12.55026 -12.26014 -12.02427 -11.87278 -11.69565 -11.12403 -10.70638 -10.23081 -8.90644 -8.59727 -7.80851 -5.27263 1.46060 1.49489 1.55697 1.65587 2.29134 2.49698 2.86734 3.33382 3.62731 3.73420 4.17621 4.43179 4.60482 4.65159 4.79771 4.82908 4.83447 4.98398 5.18825 5.29741 5.39871 5.63558 5.73850 6.05233 6.27526 6.50767 7.11674 7.17384 7.69904 7.85538 8.29626 9.19748 Molecular weight = 214.12amu Principal moments of inertia in cm(-1) A = 0.030497 B = 0.014532 C = 0.012791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.916226 B = 1926.365628 C = 2188.471376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.186 3.814 2 N -0.608 5.608 3 C -0.265 4.265 4 H 0.083 0.917 5 C -0.040 4.040 6 N -0.921 5.921 7 Si 0.955 3.045 8 H -0.294 1.294 9 H -0.306 1.306 10 H -0.261 1.261 11 C 0.110 3.890 12 C 0.253 3.747 13 H 0.135 0.865 14 N -0.734 5.734 15 C 0.691 3.309 16 O -0.646 6.646 17 N -0.475 5.475 18 C 0.135 3.865 19 N -0.429 5.429 20 H -0.005 1.005 21 H 0.008 0.992 22 H 0.025 0.975 23 H 0.241 0.759 24 H 0.085 0.915 25 H 0.080 0.920 26 H 0.433 0.567 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.051 0.949 30 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.016 -7.143 -0.923 10.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.331 5.331 3 C -0.394 4.394 4 H 0.101 0.899 5 C -0.237 4.237 6 N -0.566 5.566 7 Si 0.785 3.215 8 H -0.221 1.221 9 H -0.234 1.234 10 H -0.185 1.185 11 C -0.018 4.018 12 C 0.055 3.945 13 H 0.152 0.848 14 N -0.396 5.396 15 C 0.391 3.609 16 O -0.527 6.527 17 N -0.300 5.300 18 C -0.008 4.008 19 N -0.157 5.157 20 H 0.013 0.987 21 H 0.027 0.973 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.103 0.897 25 H 0.098 0.902 26 H 0.276 0.724 27 H 0.088 0.912 28 H 0.110 0.890 29 H 0.070 0.930 30 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 6.967 -7.244 0.019 10.050 hybrid contribution -1.162 1.627 -0.798 2.152 sum 5.805 -5.617 -0.779 8.115 Atomic orbital electron populations 1.20416 0.83306 0.95243 0.96930 1.44047 1.01685 1.01621 1.85738 1.19428 0.97211 0.85680 1.37128 0.89908 1.25611 0.98205 1.01119 0.98794 1.70315 1.19812 1.26501 1.39998 0.85471 0.78886 0.80725 0.76449 1.22095 1.23388 1.18513 1.21990 0.98262 0.88070 0.93486 1.24058 0.81346 0.95949 0.93163 0.84824 1.45376 1.22191 1.42332 1.29725 1.16264 0.81766 0.80666 0.82247 1.90820 1.40990 1.74265 1.46662 1.46193 1.16119 1.41139 1.26499 1.21397 1.01951 0.88267 0.89137 1.64550 1.29849 1.13728 1.07612 0.98652 0.97321 0.95613 0.94997 0.89651 0.90198 0.72403 0.91162 0.88969 0.93035 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 8.89 8.39 127.77 1.07 9.96 16 2 N -0.61 -26.57 2.75 -726.93 -2.00 -28.57 16 3 C -0.26 -12.70 7.47 84.03 0.63 -12.07 16 4 H 0.08 3.74 7.80 -2.91 -0.02 3.72 16 5 C -0.04 -2.10 5.06 84.86 0.43 -1.67 16 6 N -0.92 -52.93 10.66 21.65 0.23 -52.70 16 7 Si 0.95 42.84 29.58 68.60 2.03 44.87 16 8 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 9 H -0.31 -14.42 7.11 99.48 0.71 -13.71 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 11 C 0.11 3.53 5.77 86.38 0.50 4.03 16 12 C 0.25 7.88 4.78 128.88 0.62 8.50 16 13 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 14 N -0.73 -26.58 5.43 -465.55 -2.53 -29.11 16 15 C 0.69 31.38 8.69 179.38 1.56 32.94 16 16 O -0.65 -34.50 17.30 -3.98 -0.07 -34.57 16 17 N -0.47 -19.53 3.81 -501.58 -1.91 -21.44 16 18 C 0.13 4.90 11.37 127.77 1.45 6.35 16 19 N -0.43 -15.40 7.82 -174.94 -1.37 -16.77 16 20 H 0.00 -0.27 7.33 -2.39 -0.02 -0.29 16 21 H 0.01 0.43 7.20 -2.39 -0.02 0.41 16 22 H 0.03 1.03 7.83 -2.39 -0.02 1.01 16 23 H 0.24 14.00 8.31 -92.71 -0.77 13.23 16 24 H 0.09 2.46 8.03 -2.39 -0.02 2.44 16 25 H 0.08 2.19 7.86 -2.39 -0.02 2.17 16 26 H 0.43 13.81 8.96 -92.71 -0.83 12.98 16 27 H 0.07 2.70 7.49 -2.39 -0.02 2.69 16 28 H 0.09 2.63 8.14 -2.39 -0.02 2.61 16 29 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.35 13.67 5.94 -210.57 -1.25 12.42 16 Total: -1.00 -67.99 251.38 -0.28 -68.27 By element: Atomic # 1 Polarization: 22.92 SS G_CDS: -0.92 Total: 22.00 kcal Atomic # 6 Polarization: 41.77 SS G_CDS: 6.25 Total: 48.02 kcal Atomic # 7 Polarization: -141.01 SS G_CDS: -7.58 Total: -148.59 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.07 Total: -34.57 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.99 -0.28 -68.27 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000953067757.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.389 kcal (2) G-P(sol) polarization free energy of solvation -67.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds