Wall clock time and date at job start Mon Mar 30 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21287 * 120.00021 * 2 1 4 4 N 1.34774 * 120.00190 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00210 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47297 * 179.97438 * 5 4 2 7 7 O 1.42907 * 113.40879 * 313.20168 * 6 5 4 8 8 C 1.53495 * 114.20705 * 180.02562 * 6 5 4 9 9 N 1.47066 * 87.98548 * 220.34462 * 8 6 5 10 10 C 1.36933 * 136.05515 * 207.08569 * 9 8 6 11 11 H 1.07994 * 120.00522 * 6.49943 * 10 9 8 12 12 C 1.38813 * 119.99615 * 186.49718 * 10 9 8 13 13 N 1.31621 * 119.99986 * 6.13435 * 12 10 9 14 14 Si 1.86800 * 119.99906 * 186.40574 * 12 10 9 15 15 H 1.48501 * 109.47119 * 264.74574 * 14 12 10 16 16 H 1.48504 * 109.47233 * 24.74441 * 14 12 10 17 17 H 1.48503 * 109.47248 * 144.74737 * 14 12 10 18 18 C 1.47066 * 87.88243 * 27.34326 * 9 8 6 19 19 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47522 * 299.99662 * 1 2 3 21 21 H 1.08998 * 109.47425 * 60.00199 * 1 2 3 22 22 H 0.97002 * 119.99901 * 359.97438 * 4 2 1 23 23 H 1.09002 * 109.46914 * 60.00291 * 5 4 2 24 24 H 1.08994 * 109.47449 * 299.99888 * 5 4 2 25 25 H 0.96691 * 114.00080 * 46.80502 * 7 6 5 26 26 H 1.09003 * 113.46642 * 105.56186 * 8 6 5 27 27 H 1.08991 * 113.52338 * 335.13845 * 8 6 5 28 28 H 0.97003 * 119.99732 * 180.27038 * 13 12 10 29 29 H 1.08993 * 113.46844 * 87.44082 * 18 9 8 30 30 H 1.09005 * 113.46768 * 217.87931 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 8 3.4991 -3.4440 0.9555 8 6 5.6856 -2.7364 -0.0009 9 7 5.5416 -3.8485 -0.9523 10 6 6.2628 -4.9656 -1.2796 11 1 7.1330 -5.2357 -0.6999 12 6 5.8752 -5.7511 -2.3565 13 7 4.8895 -5.3592 -3.1358 14 14 6.7474 -7.3679 -2.6952 15 1 7.8184 -7.1513 -3.7007 16 1 7.3463 -7.8803 -1.4366 17 1 5.7708 -8.3573 -3.2174 18 6 4.2857 -3.2294 -1.4020 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6959 -2.0072 -0.0005 23 1 4.0095 -0.6536 0.8889 24 1 4.0089 -0.6532 -0.8910 25 1 2.5357 -3.3619 0.9532 26 1 6.0960 -3.0394 0.9624 27 1 6.1940 -1.8687 -0.4211 28 1 4.6161 -5.9100 -3.8860 29 1 4.4242 -2.4914 -2.1920 30 1 3.5034 -3.9527 -1.6326 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325168902.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:44 Heat of formation + Delta-G solvation = -24.385718 kcal Electronic energy + Delta-G solvation = -14487.001959 eV Core-core repulsion = 11898.653922 eV Total energy + Delta-G solvation = -2588.348037 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.82055 -38.61600 -35.02479 -33.96404 -32.07157 -30.39561 -28.12377 -25.71826 -24.78527 -22.03390 -20.61259 -19.41622 -17.52980 -16.66644 -16.23213 -15.55870 -15.26013 -14.68954 -14.04926 -13.79843 -13.52714 -13.30398 -12.85578 -12.58173 -12.31842 -12.22163 -11.75914 -11.16822 -10.86587 -10.74731 -10.45777 -10.05873 -9.76821 -9.51026 -9.18339 -8.88920 -8.82388 -6.92227 -5.80968 -3.11277 2.66741 3.25191 3.38691 3.43710 3.46291 4.42512 4.47103 4.78163 4.97263 5.12525 5.18986 5.30064 5.31244 5.58368 5.68561 5.76177 6.03352 6.29908 6.40043 6.51625 6.54385 6.99570 7.06538 7.45508 7.48983 7.92480 8.07698 8.24891 9.00553 9.67162 10.59004 11.38043 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.059554 B = 0.006752 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.048665 B = 4145.990524 C = 4296.890092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.509 3.491 3 O -0.552 6.552 4 N -0.725 5.725 5 C 0.106 3.894 6 C 0.055 3.945 7 O -0.522 6.522 8 C 0.133 3.867 9 N -0.599 5.599 10 C -0.214 4.214 11 H 0.083 0.917 12 C -0.008 4.008 13 N -0.922 5.922 14 Si 0.915 3.085 15 H -0.289 1.289 16 H -0.279 1.279 17 H -0.290 1.290 18 C 0.144 3.856 19 H 0.076 0.924 20 H 0.092 0.908 21 H 0.093 0.907 22 H 0.398 0.602 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.360 0.640 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.254 0.746 29 H 0.038 0.962 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.594 6.902 5.855 12.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.296 3.704 3 O -0.430 6.430 4 N -0.378 5.378 5 C -0.019 4.019 6 C 0.013 3.987 7 O -0.325 6.325 8 C 0.006 3.994 9 N -0.324 5.324 10 C -0.341 4.341 11 H 0.100 0.900 12 C -0.205 4.205 13 N -0.569 5.569 14 Si 0.745 3.255 15 H -0.216 1.216 16 H -0.205 1.205 17 H -0.216 1.216 18 C 0.017 3.983 19 H 0.095 0.905 20 H 0.111 0.889 21 H 0.112 0.888 22 H 0.233 0.767 23 H 0.089 0.911 24 H 0.098 0.902 25 H 0.206 0.794 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.420 7.139 5.796 11.816 hybrid contribution -0.340 -1.080 -0.553 1.260 sum -7.760 6.059 5.243 11.154 Atomic orbital electron populations 1.21844 0.91839 1.04254 1.05106 1.20783 0.90540 0.83462 0.75580 1.90717 1.70851 1.31423 1.50056 1.46098 1.07870 1.08675 1.75188 1.21926 0.79239 0.97859 1.02884 1.23477 0.95793 0.86426 0.93047 1.86644 1.21900 1.65503 1.58483 1.22385 0.89956 0.92006 0.95060 1.45368 1.23783 1.21137 1.42151 1.18930 1.07823 0.97587 1.09803 0.89963 1.24818 0.99255 0.99608 0.96802 1.69843 1.30589 1.38106 1.18338 0.86057 0.78454 0.83023 0.77974 1.21597 1.20451 1.21588 1.22687 0.90808 0.94362 0.90418 0.90498 0.88913 0.88809 0.76691 0.91101 0.90198 0.79419 0.93038 0.93326 0.93659 0.94480 0.91673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 10.39 36.00 0.37 -1.01 16 2 C 0.51 6.64 7.94 -10.99 -0.09 6.56 16 3 O -0.55 -9.69 17.10 5.55 0.09 -9.59 16 4 N -0.72 -9.10 5.34 -60.30 -0.32 -9.42 16 5 C 0.11 1.62 5.43 -4.04 -0.02 1.60 16 6 C 0.06 1.01 1.74 -89.97 -0.16 0.86 16 7 O -0.52 -9.37 13.56 -35.23 -0.48 -9.85 16 8 C 0.13 2.78 8.10 -8.52 -0.07 2.71 16 9 N -0.60 -15.66 3.76 -184.61 -0.70 -16.35 16 10 C -0.21 -6.13 10.73 -15.06 -0.16 -6.29 16 11 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 12 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 13 N -0.92 -27.49 11.80 55.49 0.65 -26.83 16 14 Si 0.91 22.30 29.56 -169.99 -5.02 17.28 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 C 0.14 3.30 6.66 -8.38 -0.06 3.25 16 19 H 0.08 0.45 7.91 -51.93 -0.41 0.04 16 20 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 21 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.40 3.99 6.79 -40.82 -0.28 3.72 16 23 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 24 H 0.08 1.30 7.89 -51.93 -0.41 0.89 16 25 H 0.36 4.65 7.21 45.56 0.33 4.98 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.95 8.10 -51.93 -0.42 0.53 16 28 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.04 0.88 7.93 -51.93 -0.41 0.46 16 30 H 0.06 1.64 7.57 -51.93 -0.39 1.25 16 LS Contribution 261.05 15.07 3.93 3.93 Total: -1.00 -35.15 261.05 -5.34 -40.49 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -3.23 Total: 3.01 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: -0.27 Total: 7.33 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: -0.36 Total: -52.60 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: -0.38 Total: -19.44 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -35.15 -5.34 -40.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325168902.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.107 kcal (2) G-P(sol) polarization free energy of solvation -35.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds