Wall clock time and date at job start Mon Mar 30 2020 02:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21287 * 120.00021 * 2 1 4 4 N 1.34774 * 120.00190 * 180.02562 * 2 1 3 5 5 C 1.46498 * 120.00210 * 179.97438 * 4 2 1 6 6 C 1.53004 * 109.47297 * 179.97438 * 5 4 2 7 7 O 1.42907 * 113.40879 * 313.20168 * 6 5 4 8 8 C 1.53495 * 114.20705 * 180.02562 * 6 5 4 9 9 N 1.47066 * 87.98548 * 220.34462 * 8 6 5 10 10 C 1.36933 * 136.05515 * 207.08569 * 9 8 6 11 11 H 1.07994 * 120.00522 * 6.49943 * 10 9 8 12 12 C 1.38813 * 119.99615 * 186.49718 * 10 9 8 13 13 N 1.31621 * 119.99986 * 6.13435 * 12 10 9 14 14 Si 1.86800 * 119.99906 * 186.40574 * 12 10 9 15 15 H 1.48501 * 109.47119 * 264.74574 * 14 12 10 16 16 H 1.48504 * 109.47233 * 24.74441 * 14 12 10 17 17 H 1.48503 * 109.47248 * 144.74737 * 14 12 10 18 18 C 1.47066 * 87.88243 * 27.34326 * 9 8 6 19 19 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 20 20 H 1.09000 * 109.47522 * 299.99662 * 1 2 3 21 21 H 1.08998 * 109.47425 * 60.00199 * 1 2 3 22 22 H 0.97002 * 119.99901 * 359.97438 * 4 2 1 23 23 H 1.09002 * 109.46914 * 60.00291 * 5 4 2 24 24 H 1.08994 * 109.47449 * 299.99888 * 5 4 2 25 25 H 0.96691 * 114.00080 * 46.80502 * 7 6 5 26 26 H 1.09003 * 113.46642 * 105.56186 * 8 6 5 27 27 H 1.08991 * 113.52338 * 335.13845 * 8 6 5 28 28 H 0.97003 * 119.99732 * 180.27038 * 13 12 10 29 29 H 1.08993 * 113.46844 * 87.44082 * 18 9 8 30 30 H 1.09005 * 113.46768 * 217.87931 * 18 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.6458 -1.1672 -0.0011 6 6 4.1559 -2.6097 -0.0010 7 8 3.4991 -3.4440 0.9555 8 6 5.6856 -2.7364 -0.0009 9 7 5.5416 -3.8485 -0.9523 10 6 6.2628 -4.9656 -1.2796 11 1 7.1330 -5.2357 -0.6999 12 6 5.8752 -5.7511 -2.3565 13 7 4.8895 -5.3592 -3.1358 14 14 6.7474 -7.3679 -2.6952 15 1 7.8184 -7.1513 -3.7007 16 1 7.3463 -7.8803 -1.4366 17 1 5.7708 -8.3573 -3.2174 18 6 4.2857 -3.2294 -1.4020 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3634 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 1.6959 -2.0072 -0.0005 23 1 4.0095 -0.6536 0.8889 24 1 4.0089 -0.6532 -0.8910 25 1 2.5357 -3.3619 0.9532 26 1 6.0960 -3.0394 0.9624 27 1 6.1940 -1.8687 -0.4211 28 1 4.6161 -5.9100 -3.8860 29 1 4.4242 -2.4914 -2.1920 30 1 3.5034 -3.9527 -1.6326 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325168902.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:24:44 Heat of formation + Delta-G solvation = -53.895206 kcal Electronic energy + Delta-G solvation = -14488.281586 eV Core-core repulsion = 11898.653922 eV Total energy + Delta-G solvation = -2589.627665 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.110 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.16289 -40.02212 -36.60780 -35.22183 -34.10324 -31.41999 -29.72481 -27.32004 -26.54986 -23.83222 -21.69458 -21.05160 -19.02018 -18.35384 -17.42258 -17.16693 -16.48119 -16.28220 -15.80808 -15.37558 -14.97656 -14.71511 -14.28703 -13.93301 -13.61122 -13.25241 -13.10998 -12.86857 -12.79209 -12.54547 -12.23673 -11.80162 -11.40812 -10.99532 -10.89673 -10.69702 -10.14664 -8.97504 -7.96040 -5.27638 1.44929 1.46859 1.56571 1.65679 2.21268 2.45379 3.02211 3.27580 3.32928 3.54004 3.89723 3.98938 4.36664 4.54525 4.67494 4.72209 4.75011 4.77353 4.91962 5.11916 5.12521 5.24485 5.34192 5.43894 5.86667 6.51072 6.82069 6.87340 7.24032 7.55019 8.54578 9.22918 Molecular weight = 214.11amu Principal moments of inertia in cm(-1) A = 0.059554 B = 0.006752 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.048665 B = 4145.990524 C = 4296.890092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.505 3.495 3 O -0.601 6.601 4 N -0.718 5.718 5 C 0.119 3.881 6 C 0.095 3.905 7 O -0.535 6.535 8 C 0.125 3.875 9 N -0.634 5.634 10 C -0.231 4.231 11 H 0.084 0.916 12 C -0.066 4.066 13 N -0.953 5.953 14 Si 0.983 3.017 15 H -0.285 1.285 16 H -0.268 1.268 17 H -0.291 1.291 18 C 0.142 3.858 19 H 0.104 0.896 20 H 0.107 0.893 21 H 0.101 0.899 22 H 0.412 0.588 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.383 0.617 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.250 0.750 29 H 0.027 0.973 30 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 6.900 6.787 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.295 3.705 3 O -0.483 6.483 4 N -0.372 5.372 5 C -0.006 4.006 6 C 0.052 3.948 7 O -0.342 6.342 8 C -0.001 4.001 9 N -0.360 5.360 10 C -0.359 4.359 11 H 0.101 0.899 12 C -0.259 4.259 13 N -0.602 5.602 14 Si 0.811 3.189 15 H -0.212 1.212 16 H -0.193 1.193 17 H -0.218 1.218 18 C 0.016 3.984 19 H 0.123 0.877 20 H 0.125 0.875 21 H 0.120 0.880 22 H 0.249 0.751 23 H 0.097 0.903 24 H 0.088 0.912 25 H 0.233 0.767 26 H 0.073 0.927 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -8.302 7.137 6.761 12.867 hybrid contribution -0.091 -1.045 -0.801 1.320 sum -8.393 6.092 5.960 11.962 Atomic orbital electron populations 1.21881 0.87569 1.06517 1.06134 1.21685 0.92466 0.82397 0.73946 1.90700 1.72229 1.33083 1.52287 1.46039 1.06672 1.09656 1.74854 1.21590 0.81137 0.95083 1.02836 1.22848 0.94481 0.87654 0.89821 1.86594 1.24150 1.65729 1.57722 1.22618 0.92237 0.91048 0.94168 1.45740 1.24883 1.22021 1.43354 1.19320 1.07980 0.98814 1.09781 0.89853 1.25679 1.00353 1.03021 0.96871 1.70012 1.32156 1.39247 1.18785 0.85001 0.77213 0.78722 0.78008 1.21213 1.19282 1.21755 1.22685 0.89168 0.93561 0.92988 0.87679 0.87476 0.88000 0.75056 0.90312 0.91152 0.76719 0.92680 0.91498 0.94135 0.95533 0.94464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.39 71.23 0.74 -1.36 16 2 C 0.51 12.13 7.94 87.66 0.70 12.83 16 3 O -0.60 -20.45 17.10 -3.05 -0.05 -20.50 16 4 N -0.72 -16.47 5.34 -463.07 -2.47 -18.94 16 5 C 0.12 3.46 5.43 86.38 0.47 3.93 16 6 C 0.09 3.37 1.74 -10.37 -0.02 3.35 16 7 O -0.54 -18.22 13.56 -148.98 -2.02 -20.24 16 8 C 0.13 5.14 8.10 83.17 0.67 5.82 16 9 N -0.63 -33.35 3.76 -738.47 -2.78 -36.13 16 10 C -0.23 -13.32 10.73 84.03 0.90 -12.42 16 11 H 0.08 4.61 7.84 -2.91 -0.02 4.59 16 12 C -0.07 -3.82 5.50 84.86 0.47 -3.36 16 13 N -0.95 -57.86 11.80 21.65 0.26 -57.60 16 14 Si 0.98 46.14 29.56 68.60 2.03 48.17 16 15 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 16 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 17 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 18 C 0.14 6.61 6.66 83.26 0.55 7.16 16 19 H 0.10 0.78 7.91 -2.39 -0.02 0.76 16 20 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.41 7.15 6.79 -92.71 -0.63 6.52 16 23 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.07 2.23 7.89 -2.39 -0.02 2.21 16 25 H 0.38 8.91 7.21 -74.06 -0.53 8.38 16 26 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.07 2.53 8.10 -2.39 -0.02 2.51 16 28 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 29 H 0.03 1.29 7.93 -2.39 -0.02 1.27 16 30 H 0.04 1.91 7.57 -2.38 -0.02 1.89 16 Total: -1.00 -76.54 261.05 -0.57 -77.11 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -0.01 Total: 12.19 kcal Atomic # 6 Polarization: 11.47 SS G_CDS: 4.48 Total: 15.96 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -5.00 Total: -112.67 kcal Atomic # 8 Polarization: -38.67 SS G_CDS: -2.07 Total: -40.75 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -76.54 -0.57 -77.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325168902.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.214 kcal (2) G-P(sol) polarization free energy of solvation -76.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds