Wall clock time and date at job start Mon Mar 30 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99877 * 2 1 4 4 H 1.48498 * 109.47286 * 270.00450 * 3 2 1 5 5 H 1.48506 * 109.47017 * 30.00592 * 3 2 1 6 6 H 1.48499 * 109.47148 * 149.99978 * 3 2 1 7 7 C 1.38814 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99774 * 164.69650 * 7 2 1 9 9 N 1.36932 * 120.00042 * 344.96990 * 7 2 1 10 10 C 1.46859 * 120.22500 * 333.50922 * 9 7 2 11 11 C 1.53393 * 110.04114 * 226.91852 * 10 9 7 12 12 N 1.45648 * 107.91332 * 309.10599 * 11 10 9 13 13 C 1.46413 * 116.80759 * 185.85232 * 12 11 10 14 14 C 1.54749 * 106.03278 * 208.37244 * 13 12 11 15 15 H 1.09003 * 110.33340 * 122.51553 * 14 13 12 16 16 F 1.39907 * 110.33600 * 244.64131 * 14 13 12 17 17 C 1.56136 * 105.31462 * 4.14663 * 14 13 12 18 18 C 1.48732 * 109.83745 * 65.81089 * 12 11 10 19 19 H 1.08998 * 111.28498 * 50.87852 * 18 12 11 20 20 C 1.47662 * 120.22317 * 153.77786 * 9 7 2 21 21 H 0.96998 * 119.99738 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.41192 * 347.10889 * 10 9 7 23 23 H 1.08994 * 109.42135 * 106.89739 * 10 9 7 24 24 H 1.09007 * 109.86854 * 189.42182 * 11 10 9 25 25 H 1.09007 * 109.67095 * 68.67794 * 11 10 9 26 26 H 1.08995 * 110.14211 * 327.52246 * 13 12 11 27 27 H 1.09003 * 110.13711 * 89.16465 * 13 12 11 28 28 H 1.08996 * 110.61438 * 263.36887 * 17 14 13 29 29 H 1.09006 * 111.50075 * 139.42874 * 17 14 13 30 30 H 1.08998 * 110.00647 * 249.05259 * 20 9 7 31 31 H 1.09004 * 110.00431 * 10.35687 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0616 -1.2186 -0.2474 9 7 1.3608 -2.3679 0.3065 10 6 0.1705 -2.3466 1.1664 11 6 0.2800 -3.4340 2.2427 12 7 0.6021 -4.6901 1.5793 13 6 0.6228 -5.8919 2.4152 14 6 1.6297 -6.8593 1.7480 15 1 2.4189 -7.1280 2.4501 16 9 0.9725 -8.0079 1.2939 17 6 2.2372 -6.0613 0.5514 18 6 1.9563 -4.6063 0.9700 19 1 2.6938 -4.2549 1.6916 20 6 1.8559 -3.6555 -0.2201 21 1 -0.4849 0.8400 0.0004 22 1 0.0870 -1.3710 1.6454 23 1 -0.7173 -2.5289 0.5610 24 1 -0.6684 -3.5286 2.7717 25 1 1.0709 -3.1751 2.9468 26 1 0.9537 -5.6423 3.4233 27 1 -0.3686 -6.3439 2.4473 28 1 1.7186 -6.3056 -0.3756 29 1 3.3087 -6.2379 0.4563 30 1 1.1559 -4.0514 -0.9558 31 1 2.8372 -3.5199 -0.6748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473859791.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:10 Heat of formation + Delta-G solvation = -14.958124 kcal Electronic energy + Delta-G solvation = -14948.008878 eV Core-core repulsion = 12372.442441 eV Total energy + Delta-G solvation = -2575.566437 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.118 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.45077 -38.97217 -34.99739 -32.01950 -31.45453 -28.56417 -27.52259 -24.85573 -22.49194 -21.38705 -20.81612 -19.20140 -16.76883 -16.32754 -15.63684 -14.95012 -14.76299 -14.29609 -14.05352 -13.54858 -13.19375 -12.97151 -12.80188 -12.09759 -11.62570 -11.47595 -11.02524 -10.85841 -10.78174 -10.54340 -10.40386 -10.26857 -10.05999 -9.77521 -9.60739 -8.49352 -7.88556 -6.67601 -5.77620 -3.19931 3.37179 3.43938 3.45812 4.29741 4.45703 4.54571 4.64748 4.86982 5.04731 5.35557 5.43037 5.53993 5.74320 5.76250 5.89458 6.02495 6.04666 6.20484 6.27331 6.38990 6.49586 6.64787 6.89833 7.24549 7.49374 7.69122 7.70386 7.83750 8.42839 9.22181 9.84432 10.40698 11.30918 Molecular weight = 214.12amu Principal moments of inertia in cm(-1) A = 0.067280 B = 0.007930 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.071865 B = 3530.108355 C = 3737.678713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.001 3.999 3 Si 0.904 3.096 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.597 5.597 10 C 0.184 3.816 11 C 0.037 3.963 12 N -0.527 5.527 13 C 0.024 3.976 14 C 0.081 3.919 15 H 0.085 0.915 16 F -0.211 7.211 17 C -0.138 4.138 18 C 0.053 3.947 19 H 0.054 0.946 20 C 0.161 3.839 21 H 0.254 0.746 22 H 0.086 0.914 23 H 0.027 0.973 24 H 0.063 0.937 25 H 0.025 0.975 26 H 0.044 0.956 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.031 0.969 31 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -10.176 4.540 11.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.198 4.198 3 Si 0.733 3.267 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.384 4.384 8 H 0.084 0.916 9 N -0.320 5.320 10 C 0.058 3.942 11 C -0.092 4.092 12 N -0.253 5.253 13 C -0.105 4.105 14 C 0.044 3.956 15 H 0.102 0.898 16 F -0.192 7.192 17 C -0.176 4.176 18 C -0.057 4.057 19 H 0.072 0.928 20 C 0.035 3.965 21 H 0.064 0.936 22 H 0.104 0.896 23 H 0.046 0.954 24 H 0.082 0.918 25 H 0.043 0.957 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.049 0.951 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.653 -10.074 4.188 11.228 hybrid contribution 0.878 0.913 0.732 1.463 sum 3.532 -9.161 4.920 10.982 Atomic orbital electron populations 1.70034 1.05181 1.25442 1.54289 1.25053 0.95364 0.98347 1.00998 0.86280 0.79025 0.83632 0.77722 1.21370 1.21560 1.20583 1.19229 0.92076 0.84554 1.42549 0.91600 1.44187 1.31696 1.01508 1.54604 1.20774 0.88808 0.95163 0.89459 1.22802 0.98736 0.89834 0.97797 1.62981 1.27248 1.02348 1.32688 1.23135 0.99728 0.92366 0.95263 1.22846 0.93732 0.82179 0.96804 0.89752 1.92796 1.83197 1.52362 1.90810 1.23151 1.00948 0.95161 0.98388 1.23164 0.89434 0.94197 0.98889 0.92805 1.20932 0.97633 0.86015 0.91947 0.93611 0.89581 0.95446 0.91832 0.95719 0.93729 0.89742 0.89329 0.90178 0.95116 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.35 11.06 55.49 0.61 -25.73 16 2 C 0.00 0.02 4.95 -17.43 -0.09 -0.07 16 3 Si 0.90 21.64 29.58 -169.99 -5.03 16.62 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -7.01 9.60 -15.06 -0.14 -7.15 16 8 H 0.07 1.77 7.86 -52.49 -0.41 1.35 16 9 N -0.60 -15.21 3.07 -171.98 -0.53 -15.74 16 10 C 0.18 4.50 5.20 -3.64 -0.02 4.49 16 11 C 0.04 0.74 5.93 -4.30 -0.03 0.72 16 12 N -0.53 -9.74 4.67 -224.82 -1.05 -10.79 16 13 C 0.02 0.36 6.69 -3.17 -0.02 0.34 16 14 C 0.08 1.10 4.81 -24.13 -0.12 0.99 16 15 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 16 F -0.21 -3.16 17.14 2.25 0.04 -3.12 16 17 C -0.14 -1.97 6.49 -24.54 -0.16 -2.13 16 18 C 0.05 0.94 2.79 -66.36 -0.19 0.76 16 19 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 20 C 0.16 3.43 6.20 -3.58 -0.02 3.41 16 21 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 22 H 0.09 2.31 6.19 -51.93 -0.32 1.99 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 25 H 0.02 0.49 8.03 -51.93 -0.42 0.07 16 26 H 0.04 0.61 8.03 -51.93 -0.42 0.20 16 27 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 28 H 0.09 1.33 8.08 -51.93 -0.42 0.91 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 LS Contribution 250.74 15.07 3.78 3.78 Total: -1.00 -29.63 250.74 -7.44 -37.07 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.48 Total: -3.42 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -0.78 Total: 1.34 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: -0.96 Total: -52.26 kcal Atomic # 9 Polarization: -3.16 SS G_CDS: 0.04 Total: -3.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.63 -7.44 -37.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473859791.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.110 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds