Wall clock time and date at job start Mon Mar 30 2020 02:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86795 * 119.99877 * 2 1 4 4 H 1.48498 * 109.47286 * 270.00450 * 3 2 1 5 5 H 1.48506 * 109.47017 * 30.00592 * 3 2 1 6 6 H 1.48499 * 109.47148 * 149.99978 * 3 2 1 7 7 C 1.38814 * 119.99907 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99774 * 164.69650 * 7 2 1 9 9 N 1.36932 * 120.00042 * 344.96990 * 7 2 1 10 10 C 1.46859 * 120.22500 * 333.50922 * 9 7 2 11 11 C 1.53393 * 110.04114 * 226.91852 * 10 9 7 12 12 N 1.45648 * 107.91332 * 309.10599 * 11 10 9 13 13 C 1.46413 * 116.80759 * 185.85232 * 12 11 10 14 14 C 1.54749 * 106.03278 * 208.37244 * 13 12 11 15 15 H 1.09003 * 110.33340 * 122.51553 * 14 13 12 16 16 F 1.39907 * 110.33600 * 244.64131 * 14 13 12 17 17 C 1.56136 * 105.31462 * 4.14663 * 14 13 12 18 18 C 1.48732 * 109.83745 * 65.81089 * 12 11 10 19 19 H 1.08998 * 111.28498 * 50.87852 * 18 12 11 20 20 C 1.47662 * 120.22317 * 153.77786 * 9 7 2 21 21 H 0.96998 * 119.99738 * 359.97438 * 1 2 3 22 22 H 1.09006 * 109.41192 * 347.10889 * 10 9 7 23 23 H 1.08994 * 109.42135 * 106.89739 * 10 9 7 24 24 H 1.09007 * 109.86854 * 189.42182 * 11 10 9 25 25 H 1.09007 * 109.67095 * 68.67794 * 11 10 9 26 26 H 1.08995 * 110.14211 * 327.52246 * 13 12 11 27 27 H 1.09003 * 110.13711 * 89.16465 * 13 12 11 28 28 H 1.08996 * 110.61438 * 263.36887 * 17 14 13 29 29 H 1.09006 * 111.50075 * 139.42874 * 17 14 13 30 30 H 1.08998 * 110.00647 * 249.05259 * 20 9 7 31 31 H 1.09004 * 110.00431 * 10.35687 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0616 -1.2186 -0.2474 9 7 1.3608 -2.3679 0.3065 10 6 0.1705 -2.3466 1.1664 11 6 0.2800 -3.4340 2.2427 12 7 0.6021 -4.6901 1.5793 13 6 0.6228 -5.8919 2.4152 14 6 1.6297 -6.8593 1.7480 15 1 2.4189 -7.1280 2.4501 16 9 0.9725 -8.0079 1.2939 17 6 2.2372 -6.0613 0.5514 18 6 1.9563 -4.6063 0.9700 19 1 2.6938 -4.2549 1.6916 20 6 1.8559 -3.6555 -0.2201 21 1 -0.4849 0.8400 0.0004 22 1 0.0870 -1.3710 1.6454 23 1 -0.7173 -2.5289 0.5610 24 1 -0.6684 -3.5286 2.7717 25 1 1.0709 -3.1751 2.9468 26 1 0.9537 -5.6423 3.4233 27 1 -0.3686 -6.3439 2.4473 28 1 1.7186 -6.3056 -0.3756 29 1 3.3087 -6.2379 0.4563 30 1 1.1559 -4.0514 -0.9558 31 1 2.8372 -3.5199 -0.6748 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473859791.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:10 Heat of formation + Delta-G solvation = -34.639315 kcal Electronic energy + Delta-G solvation = -14948.862318 eV Core-core repulsion = 12372.442441 eV Total energy + Delta-G solvation = -2576.419877 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 214.118 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.55533 -40.44819 -36.79861 -33.63518 -33.27519 -30.14373 -29.07273 -26.67185 -24.19140 -23.02709 -22.01492 -20.82832 -18.68611 -17.54131 -16.93983 -16.81091 -16.22300 -15.71805 -15.62678 -15.01086 -14.80663 -14.66817 -14.51740 -13.50535 -13.19515 -13.00771 -12.72732 -12.60902 -12.35028 -12.14268 -11.99686 -11.84408 -11.61299 -11.55913 -11.35207 -10.57113 -9.32939 -8.70637 -7.87622 -5.33905 1.47055 1.47894 1.57945 2.49927 2.95010 3.27039 3.35636 3.50305 3.56094 3.82774 4.03188 4.21766 4.37398 4.45606 4.47781 4.54959 4.71055 4.75129 4.85275 4.90010 5.03024 5.19565 5.20589 5.39159 5.60132 5.68778 6.02220 6.28948 6.36047 7.13098 7.82942 8.34797 9.19059 Molecular weight = 214.12amu Principal moments of inertia in cm(-1) A = 0.067280 B = 0.007930 C = 0.007489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 416.071865 B = 3530.108355 C = 3737.678713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.054 4.054 3 Si 0.972 3.028 4 H -0.285 1.285 5 H -0.292 1.292 6 H -0.269 1.269 7 C -0.267 4.267 8 H 0.071 0.929 9 N -0.615 5.615 10 C 0.192 3.808 11 C 0.054 3.946 12 N -0.548 5.548 13 C 0.023 3.977 14 C 0.087 3.913 15 H 0.122 0.878 16 F -0.219 7.219 17 C -0.130 4.130 18 C 0.060 3.940 19 H 0.055 0.945 20 C 0.157 3.843 21 H 0.250 0.750 22 H 0.055 0.945 23 H -0.008 1.008 24 H 0.080 0.920 25 H 0.028 0.972 26 H 0.065 0.935 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.111 0.889 30 H 0.015 0.985 31 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.775 -11.473 5.500 13.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.249 4.249 3 Si 0.799 3.201 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.194 1.194 7 C -0.397 4.397 8 H 0.089 0.911 9 N -0.339 5.339 10 C 0.066 3.934 11 C -0.075 4.075 12 N -0.274 5.274 13 C -0.105 4.105 14 C 0.050 3.950 15 H 0.140 0.860 16 F -0.199 7.199 17 C -0.168 4.168 18 C -0.050 4.050 19 H 0.073 0.927 20 C 0.032 3.968 21 H 0.059 0.941 22 H 0.074 0.926 23 H 0.010 0.990 24 H 0.098 0.902 25 H 0.046 0.954 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.097 0.903 29 H 0.130 0.870 30 H 0.033 0.967 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.250 -11.412 5.149 13.222 hybrid contribution 0.362 1.274 0.379 1.377 sum 4.612 -10.139 5.528 12.435 Atomic orbital electron populations 1.70212 1.06727 1.25848 1.55692 1.25864 0.96145 1.01646 1.01218 0.85214 0.77995 0.79256 0.77589 1.21133 1.21859 1.19358 1.19613 0.92537 0.85676 1.41887 0.91112 1.44483 1.31714 1.02506 1.55238 1.20497 0.87428 0.95525 0.89921 1.22436 0.99836 0.89319 0.95923 1.62863 1.27849 1.02721 1.33927 1.23216 1.00658 0.90849 0.95813 1.22937 0.93869 0.81409 0.96746 0.85991 1.92789 1.83496 1.52685 1.90972 1.23132 1.02956 0.92429 0.98318 1.22988 0.89287 0.95552 0.97128 0.92687 1.21063 0.97253 0.85145 0.93353 0.94091 0.92618 0.99039 0.90165 0.95387 0.91718 0.89650 0.90342 0.87043 0.96677 0.91782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.41 11.06 21.65 0.24 -56.17 16 2 C -0.05 -3.03 4.95 84.86 0.42 -2.61 16 3 Si 0.97 44.96 29.58 68.60 2.03 46.99 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 5 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 6 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 7 C -0.27 -14.86 9.60 84.03 0.81 -14.06 16 8 H 0.07 3.78 7.86 -2.91 -0.02 3.76 16 9 N -0.62 -31.88 3.07 -698.02 -2.14 -34.02 16 10 C 0.19 9.71 5.20 86.44 0.45 10.16 16 11 C 0.05 2.12 5.93 86.67 0.51 2.63 16 12 N -0.55 -19.36 4.67 -865.19 -4.04 -23.40 16 13 C 0.02 0.61 6.69 86.99 0.58 1.19 16 14 C 0.09 2.01 4.81 32.28 0.16 2.16 16 15 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 16 F -0.22 -5.83 17.14 44.97 0.77 -5.06 16 17 C -0.13 -3.30 6.49 32.02 0.21 -3.09 16 18 C 0.06 2.01 2.79 44.78 0.12 2.14 16 19 H 0.06 1.88 8.04 -2.39 -0.02 1.86 16 20 C 0.16 6.67 6.20 86.04 0.53 7.20 16 21 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 22 H 0.06 3.11 6.19 -2.38 -0.01 3.10 16 23 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 24 H 0.08 2.82 8.14 -2.38 -0.02 2.80 16 25 H 0.03 1.08 8.03 -2.38 -0.02 1.06 16 26 H 0.06 1.51 8.03 -2.39 -0.02 1.49 16 27 H 0.09 2.28 8.05 -2.39 -0.02 2.27 16 28 H 0.08 2.18 8.08 -2.39 -0.02 2.16 16 29 H 0.11 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.06 2.55 7.95 -2.39 -0.02 2.53 16 Total: -1.00 -64.81 250.74 1.75 -63.06 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: 1.10 Total: 2.88 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 3.79 Total: 5.72 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -5.94 Total: -113.59 kcal Atomic # 9 Polarization: -5.83 SS G_CDS: 0.77 Total: -5.06 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -64.81 1.75 -63.06 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473859791.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.422 kcal (2) G-P(sol) polarization free energy of solvation -64.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds