Wall clock time and date at job start Mon Mar 30 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00537 * 2 1 3 13 13 O 1.42901 * 109.47334 * 64.99951 * 12 2 1 14 14 C 1.42897 * 114.00029 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.48290 * 54.97792 * 14 13 12 16 16 C 1.53089 * 109.48019 * 175.00317 * 14 13 12 17 17 C 1.53181 * 109.16431 * 177.59038 * 16 14 13 18 18 C 1.53172 * 109.03424 * 303.01983 * 17 16 14 19 19 C 1.53086 * 109.17020 * 56.97924 * 18 17 16 20 20 O 1.42909 * 109.41391 * 302.39329 * 19 18 17 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46710 * 185.00209 * 12 2 1 26 26 H 1.09003 * 109.46878 * 304.99759 * 12 2 1 27 27 H 1.08999 * 109.52034 * 297.49378 * 16 14 13 28 28 H 1.09001 * 109.52707 * 57.61612 * 16 14 13 29 29 H 1.09000 * 109.53932 * 62.88584 * 17 16 14 30 30 H 1.09004 * 109.54293 * 183.14974 * 17 16 14 31 31 H 1.09006 * 109.52014 * 176.88705 * 18 17 16 32 32 H 1.09003 * 109.52287 * 297.00958 * 18 17 16 33 33 H 1.09000 * 109.47895 * 62.37265 * 19 18 17 34 34 H 1.09000 * 109.48789 * 182.41107 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0400 -0.7211 -1.2493 13 8 1.6619 0.0169 -2.4131 14 6 2.0913 -0.5742 -3.6412 15 1 1.7310 -1.6015 -3.6957 16 6 1.5285 0.2274 -4.8178 17 6 2.0420 -0.3761 -6.1288 18 6 3.5736 -0.3829 -6.1095 19 6 4.0575 -1.1608 -4.8831 20 8 3.5191 -0.5659 -3.7004 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 3.1263 -0.7994 -1.2056 26 1 1.6053 -1.7197 -1.2953 27 1 0.4395 0.1854 -4.7994 28 1 1.8544 1.2647 -4.7410 29 1 1.6740 -1.3973 -6.2287 30 1 1.6904 0.2234 -6.9685 31 1 3.9471 -0.8612 -7.0150 32 1 3.9418 0.6419 -6.0605 33 1 3.7230 -2.1958 -4.9539 34 1 5.1463 -1.1325 -4.8408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000033992264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:19 Heat of formation + Delta-G solvation = -117.585889 kcal Electronic energy + Delta-G solvation = -14749.035505 eV Core-core repulsion = 12260.186349 eV Total energy + Delta-G solvation = -2488.849157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.38377 -36.66701 -33.94343 -33.62247 -31.00383 -29.79012 -25.41265 -25.00902 -24.03707 -22.97691 -20.37822 -19.47108 -17.10336 -16.41873 -15.94036 -15.34501 -14.81897 -14.48505 -14.18483 -13.74589 -13.29887 -12.75185 -12.62457 -12.45419 -11.66188 -11.44131 -11.17938 -11.10776 -10.95114 -10.74249 -10.64266 -10.49254 -10.10195 -9.99077 -9.32475 -9.23519 -8.96999 -8.74883 -8.27672 -5.94630 -4.01820 3.33673 3.39737 3.43223 3.75113 4.30545 4.51092 4.73980 4.79234 4.92140 5.15805 5.18926 5.36188 5.40392 5.57085 5.65634 5.75432 5.86268 5.94448 6.04120 6.23501 6.33616 6.50168 6.80087 7.05120 7.31496 7.36368 7.43509 7.77094 7.85539 8.11170 8.25104 8.48585 9.01541 9.62228 11.11726 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.060104 B = 0.006208 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.750497 B = 4509.093174 C = 4835.181279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.046 3.954 3 H 0.034 0.966 4 C -0.515 4.515 5 H 0.055 0.945 6 C 0.062 3.938 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.286 1.286 12 C 0.073 3.927 13 O -0.365 6.365 14 C 0.253 3.747 15 H 0.044 0.956 16 C -0.141 4.141 17 C -0.119 4.119 18 C -0.159 4.159 19 C 0.071 3.929 20 O -0.402 6.402 21 H 0.080 0.920 22 H 0.014 0.986 23 H 0.021 0.979 24 H 0.260 0.740 25 H 0.045 0.955 26 H 0.032 0.968 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.047 0.953 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -3.448 -15.620 16.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.028 3.972 3 H 0.052 0.948 4 C -0.553 4.553 5 H 0.073 0.927 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.212 1.212 12 C -0.002 4.002 13 O -0.284 6.284 14 C 0.157 3.843 15 H 0.062 0.938 16 C -0.179 4.179 17 C -0.157 4.157 18 C -0.197 4.197 19 C -0.006 4.006 20 O -0.324 6.324 21 H 0.098 0.902 22 H 0.033 0.967 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.576 -3.077 -15.306 15.823 hybrid contribution 0.288 -0.834 0.641 1.091 sum 2.864 -3.912 -14.664 15.445 Atomic orbital electron populations 1.21728 0.98344 0.98655 1.00276 1.18695 0.93273 0.96524 0.88737 0.94805 1.21041 1.31450 1.12447 0.90352 0.92652 1.24936 0.95081 0.94983 0.98921 1.69916 1.36623 1.22799 1.23294 0.86555 0.79225 0.79349 0.82622 1.20692 1.19902 1.21181 1.22942 0.98456 0.94212 0.84612 1.88068 1.74635 1.52271 1.13470 1.22861 0.79795 0.94938 0.86696 0.93839 1.22008 1.01564 1.01276 0.93029 1.21582 0.95410 1.01308 0.97386 1.22241 0.96445 1.02173 0.98808 1.22439 0.98822 0.95315 0.84044 1.87893 1.22521 1.81221 1.40741 0.90164 0.96692 0.96022 0.92997 0.93664 0.94939 0.90238 0.90216 0.91795 0.91072 0.90933 0.90835 0.93436 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.44 8.87 37.16 0.33 -3.11 16 2 C 0.05 1.25 2.54 -91.77 -0.23 1.02 16 3 H 0.03 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.51 -14.74 8.56 -34.44 -0.29 -15.03 16 5 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 6 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -26.23 11.32 55.43 0.63 -25.60 16 8 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 C 0.07 1.72 5.12 37.16 0.19 1.91 16 13 O -0.37 -7.96 9.80 -59.04 -0.58 -8.54 16 14 C 0.25 4.37 3.20 37.20 0.12 4.48 16 15 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.14 -1.93 5.79 -26.59 -0.15 -2.09 16 17 C -0.12 -1.23 6.03 -26.55 -0.16 -1.39 16 18 C -0.16 -1.60 6.13 -26.60 -0.16 -1.76 16 19 C 0.07 0.86 6.84 37.20 0.25 1.11 16 20 O -0.40 -6.99 10.03 -59.04 -0.59 -7.58 16 21 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 22 H 0.01 0.34 7.82 -51.93 -0.41 -0.06 16 23 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 24 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 25 H 0.04 1.07 7.75 -51.93 -0.40 0.67 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 275.79 15.07 4.16 4.16 Total: -1.00 -30.88 275.79 -7.35 -38.23 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -5.74 Total: -4.18 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: -0.21 Total: -13.18 kcal Atomic # 7 Polarization: -26.23 SS G_CDS: 0.63 Total: -25.60 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -1.17 Total: -16.12 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.88 -7.35 -38.23 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033992264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.352 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds