Wall clock time and date at job start Mon Mar 30 2020 02:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.53001 * 109.46989 * 240.00537 * 2 1 3 13 13 O 1.42901 * 109.47334 * 64.99951 * 12 2 1 14 14 C 1.42897 * 114.00029 * 180.02562 * 13 12 2 15 15 H 1.09000 * 109.48290 * 54.97792 * 14 13 12 16 16 C 1.53089 * 109.48019 * 175.00317 * 14 13 12 17 17 C 1.53181 * 109.16431 * 177.59038 * 16 14 13 18 18 C 1.53172 * 109.03424 * 303.01983 * 17 16 14 19 19 C 1.53086 * 109.17020 * 56.97924 * 18 17 16 20 20 O 1.42909 * 109.41391 * 302.39329 * 19 18 17 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.08999 * 109.46710 * 185.00209 * 12 2 1 26 26 H 1.09003 * 109.46878 * 304.99759 * 12 2 1 27 27 H 1.08999 * 109.52034 * 297.49378 * 16 14 13 28 28 H 1.09001 * 109.52707 * 57.61612 * 16 14 13 29 29 H 1.09000 * 109.53932 * 62.88584 * 17 16 14 30 30 H 1.09004 * 109.54293 * 183.14974 * 17 16 14 31 31 H 1.09006 * 109.52014 * 176.88705 * 18 17 16 32 32 H 1.09003 * 109.52287 * 297.00958 * 18 17 16 33 33 H 1.09000 * 109.47895 * 62.37265 * 19 18 17 34 34 H 1.09000 * 109.48789 * 182.41107 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 6 2.0400 -0.7211 -1.2493 13 8 1.6619 0.0169 -2.4131 14 6 2.0913 -0.5742 -3.6412 15 1 1.7310 -1.6015 -3.6957 16 6 1.5285 0.2274 -4.8178 17 6 2.0420 -0.3761 -6.1288 18 6 3.5736 -0.3829 -6.1095 19 6 4.0575 -1.1608 -4.8831 20 8 3.5191 -0.5659 -3.7004 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 3.1263 -0.7994 -1.2056 26 1 1.6053 -1.7197 -1.2953 27 1 0.4395 0.1854 -4.7994 28 1 1.8544 1.2647 -4.7410 29 1 1.6740 -1.3973 -6.2287 30 1 1.6904 0.2234 -6.9685 31 1 3.9471 -0.8612 -7.0150 32 1 3.9418 0.6419 -6.0605 33 1 3.7230 -2.1958 -4.9539 34 1 5.1463 -1.1325 -4.8408 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000033992264.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:19 Heat of formation + Delta-G solvation = -136.531639 kcal Electronic energy + Delta-G solvation = -14749.857055 eV Core-core repulsion = 12260.186349 eV Total energy + Delta-G solvation = -2489.670706 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.60740 -38.28212 -35.96039 -34.64967 -32.94249 -31.07588 -27.39242 -26.83138 -25.34958 -24.14633 -21.80165 -21.08964 -18.80347 -17.82338 -17.64307 -16.79881 -16.51879 -15.78075 -15.49292 -15.21340 -14.79877 -14.42510 -13.83723 -13.68933 -13.52579 -13.17340 -12.79193 -12.70309 -12.43109 -12.18281 -12.14279 -11.97292 -11.89699 -11.45070 -11.23327 -10.94643 -10.70035 -10.44613 -10.43327 -8.12144 -6.28419 1.42555 1.43822 1.54693 2.36741 2.54891 3.06493 3.15700 3.79248 3.87819 4.01456 4.03469 4.14555 4.36813 4.45773 4.54904 4.64003 4.77431 4.82179 4.86919 4.94417 5.03170 5.08639 5.10631 5.21732 5.31793 5.35260 5.55476 5.81521 6.03947 6.16503 6.30804 6.42153 6.81941 7.40235 8.94122 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.060104 B = 0.006208 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.750497 B = 4509.093174 C = 4835.181279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.041 3.959 3 H -0.006 1.006 4 C -0.539 4.539 5 H 0.057 0.943 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.271 1.271 10 H -0.267 1.267 11 H -0.281 1.281 12 C 0.092 3.908 13 O -0.388 6.388 14 C 0.244 3.756 15 H 0.055 0.945 16 C -0.138 4.138 17 C -0.114 4.114 18 C -0.154 4.154 19 C 0.058 3.942 20 O -0.436 6.436 21 H 0.056 0.944 22 H 0.026 0.974 23 H 0.029 0.971 24 H 0.263 0.737 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.001 -4.783 -16.814 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.022 3.978 3 H 0.013 0.987 4 C -0.577 4.577 5 H 0.075 0.925 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.790 3.210 9 H -0.196 1.196 10 H -0.192 1.192 11 H -0.207 1.207 12 C 0.016 3.984 13 O -0.308 6.308 14 C 0.149 3.851 15 H 0.072 0.928 16 C -0.176 4.176 17 C -0.151 4.151 18 C -0.192 4.192 19 C -0.017 4.017 20 O -0.359 6.359 21 H 0.074 0.926 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.053 0.947 26 H 0.061 0.939 27 H 0.103 0.897 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.922 -4.419 -16.530 17.358 hybrid contribution 0.214 -0.395 0.926 1.029 sum 3.136 -4.814 -15.604 16.628 Atomic orbital electron populations 1.21544 0.97625 0.98871 0.99634 1.18656 0.93921 0.94644 0.90580 0.98739 1.21362 1.32006 1.12867 0.91434 0.92458 1.25824 0.95055 0.95663 1.02176 1.70055 1.37360 1.24027 1.24212 0.85443 0.78936 0.78260 0.78327 1.19626 1.19164 1.20682 1.22484 0.97501 0.94070 0.84343 1.88008 1.75308 1.52979 1.14547 1.23217 0.80392 0.95978 0.85545 0.92751 1.22051 1.01866 1.00229 0.93452 1.21613 0.95501 1.02229 0.95765 1.22227 0.96264 1.01721 0.98969 1.22810 0.99537 0.96134 0.83256 1.87837 1.22320 1.82131 1.43584 0.92554 0.95448 0.95205 0.92765 0.94737 0.93895 0.89680 0.91623 0.90387 0.88838 0.87733 0.91637 0.92054 0.87674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.28 8.87 71.98 0.64 -5.64 16 2 C 0.04 2.25 2.54 -11.54 -0.03 2.22 16 3 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 4 C -0.54 -31.25 8.56 25.60 0.22 -31.03 16 5 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 6 C 0.01 0.67 5.30 84.66 0.45 1.12 16 7 N -0.92 -55.04 11.32 21.45 0.24 -54.80 16 8 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 9 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.09 4.37 5.12 71.98 0.37 4.74 16 13 O -0.39 -17.13 9.80 -126.21 -1.24 -18.37 16 14 C 0.24 8.26 3.20 72.01 0.23 8.49 16 15 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 16 C -0.14 -3.61 5.79 30.68 0.18 -3.43 16 17 C -0.11 -2.00 6.03 30.71 0.19 -1.81 16 18 C -0.15 -2.65 6.13 30.68 0.19 -2.46 16 19 C 0.06 1.30 6.84 72.01 0.49 1.79 16 20 O -0.44 -14.95 10.03 -126.21 -1.27 -16.22 16 21 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 22 H 0.03 1.32 7.82 -2.38 -0.02 1.30 16 23 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.03 1.68 7.75 -2.39 -0.02 1.66 16 26 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -67.09 275.79 3.73 -63.37 By element: Atomic # 1 Polarization: 4.51 SS G_CDS: 1.04 Total: 5.55 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: 2.92 Total: -26.01 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: 0.24 Total: -54.80 kcal Atomic # 8 Polarization: -32.09 SS G_CDS: -2.50 Total: -34.59 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -67.09 3.73 -63.37 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000033992264.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.165 kcal (2) G-P(sol) polarization free energy of solvation -67.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds