Wall clock time and date at job start Mon Mar 30 2020 02:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86801 * 120.00012 * 2 1 4 4 H 1.48498 * 109.47127 * 270.00458 * 3 2 1 5 5 H 1.48502 * 109.47152 * 30.00067 * 3 2 1 6 6 H 1.48493 * 109.47233 * 150.00215 * 3 2 1 7 7 C 1.38817 * 120.00018 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99933 * 359.97438 * 7 2 1 9 9 N 1.36936 * 119.99926 * 179.97438 * 7 2 1 10 10 C 1.46500 * 120.00222 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47277 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.47044 * 180.02562 * 11 10 9 13 13 N 1.46898 * 109.46953 * 180.02562 * 12 11 10 14 14 C 1.47015 * 110.99642 * 293.62955 * 13 12 11 15 15 C 1.53098 * 109.25723 * 177.60943 * 14 13 12 16 16 O 1.43023 * 109.25952 * 56.85124 * 15 14 13 17 17 C 1.43014 * 113.73189 * 301.32868 * 16 15 14 18 18 C 1.47016 * 110.99994 * 169.99953 * 13 12 11 19 19 H 0.97001 * 120.00296 * 0.02562 * 1 2 3 20 20 H 0.97003 * 120.00234 * 359.97438 * 9 7 2 21 21 H 1.08994 * 109.46874 * 59.99582 * 10 9 7 22 22 H 1.09000 * 109.47084 * 300.00056 * 10 9 7 23 23 H 1.08994 * 109.47742 * 59.99830 * 11 10 9 24 24 H 1.09009 * 109.47009 * 299.99684 * 11 10 9 25 25 H 1.08994 * 109.47199 * 59.99242 * 12 11 10 26 26 H 1.08996 * 109.46529 * 299.99637 * 12 11 10 27 27 H 1.08999 * 109.50673 * 297.54208 * 14 13 12 28 28 H 1.09004 * 109.50788 * 57.67624 * 14 13 12 29 29 H 1.08997 * 109.51060 * 296.91507 * 15 14 13 30 30 H 1.08998 * 109.54334 * 176.80599 * 15 14 13 31 31 H 1.08999 * 109.51224 * 298.73604 * 17 16 15 32 32 H 1.09005 * 109.53853 * 178.62625 * 17 16 15 33 33 H 1.09000 * 109.50136 * 302.32362 * 18 13 12 34 34 H 1.08996 * 109.50988 * 62.41201 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4975 2.0465 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1122 -2.4709 -0.0011 11 6 5.6164 -2.1912 -0.0011 12 6 6.3814 -3.5163 -0.0017 13 7 7.8256 -3.2478 -0.0011 14 6 8.2434 -2.6098 -1.2580 15 6 9.7400 -2.2942 -1.1910 16 8 10.4648 -3.4988 -0.9283 17 6 10.0837 -4.1462 0.2887 18 6 8.5906 -4.4806 0.2367 19 1 -0.4851 0.8400 -0.0004 20 1 3.8646 -0.3621 -0.0014 21 1 3.8484 -3.0426 -0.8908 22 1 3.8492 -3.0422 0.8891 23 1 5.8798 -1.6197 0.8888 24 1 5.8797 -1.6197 -0.8912 25 1 6.1179 -4.0875 -0.8918 26 1 6.1182 -4.0881 0.8881 27 1 8.0510 -3.2861 -2.0909 28 1 7.6827 -1.6861 -1.4012 29 1 9.9252 -1.5764 -0.3920 30 1 10.0667 -1.8729 -2.1417 31 1 10.2788 -3.4822 1.1308 32 1 10.6584 -5.0646 0.4086 33 1 8.2833 -4.9224 1.1845 34 1 8.4032 -5.1870 -0.5720 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037389671.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:31 Heat of formation + Delta-G solvation = -55.277772 kcal Electronic energy + Delta-G solvation = -14355.211644 eV Core-core repulsion = 11901.357121 eV Total energy + Delta-G solvation = -2453.854523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.54231 -37.81282 -36.47975 -34.03731 -32.25123 -31.86632 -28.53482 -25.97841 -25.01611 -23.60165 -22.29474 -21.32454 -19.63768 -17.59288 -17.14643 -16.60708 -16.52208 -15.99741 -15.89796 -15.69623 -15.31412 -14.81908 -14.67140 -13.82710 -13.69216 -13.17110 -12.85150 -12.83632 -12.40151 -12.34761 -12.16357 -12.04169 -11.82155 -11.69602 -11.42037 -10.98540 -10.66011 -9.42097 -9.32562 -8.05137 -5.39527 1.37426 1.41156 1.48894 2.47306 2.69663 2.96625 3.26215 3.60093 3.92530 3.96323 4.02779 4.18028 4.20987 4.31064 4.37859 4.49123 4.57099 4.66082 4.72490 4.77754 4.83483 4.85350 4.92985 5.02812 5.28835 5.32592 5.72399 5.93453 5.97800 6.17604 6.19220 7.05380 7.81276 8.01108 9.16464 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.058715 B = 0.005347 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 476.763179 B = 5235.700024 C = 5565.002860 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.064 4.064 3 Si 0.959 3.041 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.251 1.251 7 C -0.242 4.242 8 H 0.055 0.945 9 N -0.760 5.760 10 C 0.155 3.845 11 C -0.110 4.110 12 C 0.068 3.932 13 N -0.546 5.546 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.405 6.405 17 C 0.062 3.938 18 C 0.016 3.984 19 H 0.259 0.741 20 H 0.367 0.633 21 H 0.022 0.978 22 H 0.025 0.975 23 H 0.068 0.932 24 H 0.064 0.936 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.061 0.939 30 H 0.113 0.887 31 H 0.061 0.939 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.827 -6.764 -0.440 23.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.786 3.214 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.176 1.176 7 C -0.373 4.373 8 H 0.073 0.927 9 N -0.406 5.406 10 C 0.028 3.972 11 C -0.148 4.148 12 C -0.060 4.060 13 N -0.271 5.271 14 C -0.116 4.116 15 C -0.012 4.012 16 O -0.324 6.324 17 C -0.014 4.014 18 C -0.112 4.112 19 H 0.068 0.932 20 H 0.200 0.800 21 H 0.040 0.960 22 H 0.043 0.957 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.054 0.946 26 H 0.103 0.897 27 H 0.055 0.945 28 H 0.108 0.892 29 H 0.079 0.921 30 H 0.131 0.869 31 H 0.080 0.920 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.883 -6.636 -0.173 23.827 hybrid contribution -0.760 0.493 -0.514 1.042 sum 22.124 -6.142 -0.687 22.971 Atomic orbital electron populations 1.69889 1.07219 1.26876 1.59458 1.25563 0.96186 1.01479 1.02297 0.85349 0.78644 0.79192 0.78258 1.20176 1.21986 1.17570 1.19067 0.82784 0.93589 1.41853 0.92712 1.42725 1.02547 1.04306 1.91051 1.20725 0.90956 0.87380 0.98126 1.21585 0.92693 0.97991 1.02530 1.21936 0.86290 0.96313 1.01494 1.62214 1.04537 1.25912 1.34462 1.22889 0.97829 1.00485 0.90430 1.22754 0.89169 0.86584 1.02714 1.87947 1.62405 1.39642 1.42444 1.22805 0.93363 0.98609 0.86647 1.22860 0.95059 0.90837 1.02440 0.93195 0.80012 0.95976 0.95705 0.91351 0.91731 0.94559 0.89741 0.94495 0.89199 0.92056 0.86929 0.92049 0.86501 0.88303 0.94366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.99 13.97 21.65 0.30 -63.69 16 2 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 3 Si 0.96 45.88 27.73 68.60 1.90 47.78 16 4 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.25 -10.85 6.52 99.48 0.65 -10.20 16 7 C -0.24 -14.23 10.47 84.03 0.88 -13.35 16 8 H 0.05 3.52 8.06 -2.91 -0.02 3.50 16 9 N -0.76 -36.60 5.41 -343.46 -1.86 -38.45 16 10 C 0.15 5.95 6.26 86.38 0.54 6.49 16 11 C -0.11 -3.21 5.26 30.60 0.16 -3.05 16 12 C 0.07 1.63 4.96 86.31 0.43 2.06 16 13 N -0.55 -11.99 4.73 -895.22 -4.23 -16.22 16 14 C 0.01 0.24 5.44 86.31 0.47 0.71 16 15 C 0.06 1.18 7.01 72.01 0.50 1.68 16 16 O -0.41 -8.41 10.83 -148.98 -1.61 -10.02 16 17 C 0.06 1.02 7.01 72.01 0.50 1.53 16 18 C 0.02 0.29 5.64 86.31 0.49 0.77 16 19 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 20 H 0.37 16.67 5.53 -92.71 -0.51 16.16 16 21 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 22 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 23 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 24 H 0.06 1.85 6.52 -2.38 -0.02 1.83 16 25 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 26 H 0.08 1.91 8.04 -2.39 -0.02 1.89 16 27 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 1.88 6.38 -2.38 -0.02 1.86 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.12 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.10 1.51 8.09 -2.39 -0.02 1.49 16 34 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -69.11 273.27 -0.56 -69.68 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.49 Total: 17.45 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: 4.44 Total: -6.52 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -5.79 Total: -118.36 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -1.61 Total: -10.02 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.90 Total: 47.78 kcal Total: -69.11 -0.56 -69.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037389671.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.399 kcal (2) G-P(sol) polarization free energy of solvation -69.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds