Wall clock time and date at job start Mon Mar 30 2020 03:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99842 * 2 1 4 4 H 1.48500 * 109.47116 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47335 * 299.99884 * 3 2 1 6 6 H 1.48501 * 109.47110 * 60.00116 * 3 2 1 7 7 C 1.37873 * 120.00168 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00187 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99794 * 0.02562 * 7 2 1 10 10 S 1.81405 * 109.46963 * 180.02562 * 9 7 2 11 11 N 1.65602 * 103.00100 * 74.99798 * 10 9 7 12 12 C 1.33878 * 122.76595 * 269.98077 * 11 10 9 13 13 O 1.21230 * 125.39396 * 0.03521 * 12 11 10 14 14 C 1.51308 * 109.20638 * 180.02562 * 12 11 10 15 15 C 1.54226 * 103.55871 * 359.97438 * 14 12 11 16 16 C 1.33881 * 122.75904 * 89.99608 * 11 10 9 17 17 O 1.21227 * 125.39884 * 0.02562 * 16 11 10 18 18 H 0.96998 * 120.00040 * 0.02562 * 1 2 3 19 19 H 1.08990 * 109.47424 * 60.00227 * 9 7 2 20 20 H 1.08997 * 109.47111 * 299.99572 * 9 7 2 21 21 H 1.09002 * 110.60370 * 241.47710 * 14 12 11 22 22 H 1.09000 * 110.60578 * 118.52059 * 14 12 11 23 23 H 1.08998 * 110.60499 * 118.52002 * 15 14 12 24 24 H 1.08999 * 110.60759 * 241.48243 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 16 2.4299 -3.8779 -0.0014 11 7 2.9883 -3.8903 1.5576 12 6 4.0595 -3.1893 1.9492 13 8 4.7337 -2.4793 1.2343 14 6 4.2952 -3.4235 3.4253 15 6 3.1622 -4.3911 3.8234 16 6 2.4057 -4.6026 2.5301 17 8 1.4275 -5.3059 2.3957 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5563 -0.8919 20 1 0.6241 -2.5575 0.8880 21 1 4.2134 -2.4886 3.9799 22 1 5.2692 -3.8842 3.5899 23 1 3.5723 -5.3336 4.1860 24 1 2.5171 -3.9376 4.5759 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038845467.mol2 24 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:45:11 Heat of formation + Delta-G solvation = -92.269593 kcal Electronic energy + Delta-G solvation = -12435.792042 eV Core-core repulsion = 10053.701453 eV Total energy + Delta-G solvation = -2382.090589 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 215.040 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.58954 -39.68457 -36.87799 -35.34269 -33.16400 -30.74650 -27.14659 -25.27781 -23.34375 -22.47842 -19.28012 -18.68678 -18.14419 -17.36701 -16.88777 -16.34509 -15.31356 -15.16070 -14.98724 -14.82656 -14.55152 -14.18171 -13.72605 -13.12694 -12.83132 -12.48283 -12.26991 -12.09908 -11.72561 -11.69605 -11.14428 -10.77206 -10.46422 -8.83330 -8.26767 -6.49414 0.09856 0.49900 1.23144 1.32184 1.34646 1.50597 1.93188 2.32759 2.96566 3.05975 3.23499 3.40233 3.64069 4.18076 4.70163 4.77226 4.86260 4.88394 4.89854 5.55227 5.58310 5.80924 6.28478 6.50131 6.64340 7.20477 8.75506 Molecular weight = 215.04amu Principal moments of inertia in cm(-1) A = 0.034753 B = 0.011506 C = 0.010231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.485791 B = 2433.016678 C = 2736.140012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.015 3.985 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.541 4.541 8 H 0.070 0.930 9 C 0.041 3.959 10 S 0.041 5.959 11 N -0.574 5.574 12 C 0.506 3.494 13 O -0.493 6.493 14 C -0.127 4.127 15 C -0.124 4.124 16 C 0.509 3.491 17 O -0.505 6.505 18 H 0.269 0.731 19 H 0.049 0.951 20 H 0.014 0.986 21 H 0.144 0.856 22 H 0.163 0.837 23 H 0.165 0.835 24 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.751 -6.616 10.816 15.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.194 1.194 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.088 0.912 9 C -0.107 4.107 10 S 0.168 5.832 11 N -0.407 5.407 12 C 0.294 3.706 13 O -0.363 6.363 14 C -0.170 4.170 15 C -0.167 4.167 16 C 0.298 3.702 17 O -0.376 6.376 18 H 0.078 0.922 19 H 0.067 0.933 20 H 0.033 0.967 21 H 0.162 0.838 22 H 0.181 0.819 23 H 0.183 0.817 24 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.780 -7.209 9.666 14.916 hybrid contribution -0.700 1.726 0.128 1.867 sum 8.080 -5.483 9.794 13.830 Atomic orbital electron populations 1.70076 1.07612 1.28350 1.50355 1.25932 0.95738 1.03006 0.93925 0.85370 0.78773 0.78458 0.78402 1.19432 1.19741 1.19497 1.21697 0.93684 0.90362 1.52232 0.91210 1.21429 0.94997 0.94827 0.99441 1.84444 1.55119 1.44348 0.99272 1.48786 1.31488 1.46610 1.13807 1.22493 0.77935 0.76394 0.93741 1.90747 1.48422 1.35159 1.61986 1.22666 1.03306 1.04296 0.86701 1.22665 0.96868 1.04800 0.92330 1.22530 0.83072 0.76332 0.88304 1.90728 1.25492 1.37291 1.84125 0.92185 0.93314 0.96739 0.83812 0.81933 0.81746 0.83470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.51 13.29 21.45 0.28 -55.23 14 2 C 0.01 0.85 5.46 84.65 0.46 1.31 14 3 Si 0.97 45.06 29.54 68.60 2.03 47.08 14 4 H -0.27 -12.62 7.11 99.48 0.71 -11.91 14 5 H -0.27 -12.24 7.11 99.48 0.71 -11.54 14 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 14 7 C -0.54 -31.57 9.13 25.60 0.23 -31.34 14 8 H 0.07 4.16 6.47 -2.91 -0.02 4.15 14 9 C 0.04 2.31 5.88 71.24 0.42 2.72 14 10 S 0.04 1.91 21.16 -56.49 -1.20 0.71 14 11 N -0.57 -22.27 2.81 -427.79 -1.20 -23.47 14 12 C 0.51 17.47 8.07 87.99 0.71 18.18 14 13 O -0.49 -21.39 16.39 -2.88 -0.05 -21.44 14 14 C -0.13 -2.12 7.03 30.46 0.21 -1.90 14 15 C -0.12 -1.94 7.03 30.46 0.21 -1.72 14 16 C 0.51 16.59 8.07 87.99 0.71 17.30 14 17 O -0.50 -20.13 17.59 -2.87 -0.05 -20.18 14 18 H 0.27 15.03 8.31 -92.71 -0.77 14.26 14 19 H 0.05 2.85 8.14 -2.40 -0.02 2.83 14 20 H 0.01 0.85 8.14 -2.39 -0.02 0.83 14 21 H 0.14 1.89 8.14 -2.39 -0.02 1.87 14 22 H 0.16 1.40 8.14 -2.39 -0.02 1.38 14 23 H 0.16 1.22 8.14 -2.39 -0.02 1.20 14 24 H 0.15 1.68 8.14 -2.39 -0.02 1.66 14 Total: -1.00 -78.42 236.39 4.00 -74.43 By element: Atomic # 1 Polarization: -7.69 SS G_CDS: 1.21 Total: -6.48 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 2.96 Total: 4.56 kcal Atomic # 7 Polarization: -77.78 SS G_CDS: -0.92 Total: -78.70 kcal Atomic # 8 Polarization: -41.52 SS G_CDS: -0.10 Total: -41.61 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -1.20 Total: 0.71 kcal Total: -78.42 4.00 -74.43 kcal The number of atoms in the molecule is 24 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038845467.mol2 24 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.843 kcal (2) G-P(sol) polarization free energy of solvation -78.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds