Wall clock time and date at job start Mon Mar 30 2020 02:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48500 * 109.47052 * 239.99624 * 3 2 1 5 5 H 1.48497 * 109.47461 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47018 * 120.00078 * 3 2 1 7 7 C 1.37881 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99813 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46874 * 183.71988 * 9 7 2 11 11 C 1.46894 * 110.99995 * 196.04339 * 10 9 7 12 12 C 1.52998 * 109.47056 * 172.09182 * 11 10 9 13 13 H 1.08997 * 109.47137 * 310.55957 * 12 11 10 14 14 O 1.42904 * 109.47482 * 70.56417 * 12 11 10 15 15 C 1.53001 * 109.47023 * 190.55929 * 12 11 10 16 16 N 1.46906 * 109.47179 * 180.02562 * 15 12 11 17 17 C 1.46899 * 111.00047 * 72.08555 * 10 9 7 18 18 C 1.53000 * 117.50183 * 278.68966 * 17 10 9 19 19 C 1.53001 * 117.50053 * 210.06486 * 17 10 9 20 20 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47359 * 63.72256 * 9 7 2 22 22 H 1.08997 * 109.46745 * 303.71572 * 9 7 2 23 23 H 1.08999 * 109.47670 * 52.08924 * 11 10 9 24 24 H 1.09005 * 109.47177 * 292.08705 * 11 10 9 25 25 H 0.96697 * 114.00062 * 59.99356 * 14 12 11 26 26 H 1.08998 * 109.47630 * 299.99699 * 15 12 11 27 27 H 1.08999 * 109.47139 * 60.00530 * 15 12 11 28 28 H 1.00894 * 110.99977 * 56.04516 * 16 15 12 29 29 H 1.00895 * 110.99786 * 180.02562 * 16 15 12 30 30 H 1.09004 * 115.55060 * 64.39318 * 17 10 9 31 31 H 1.09001 * 117.49765 * 359.97438 * 18 17 10 32 32 H 1.09003 * 117.50137 * 145.01806 * 18 17 10 33 33 H 1.09000 * 117.49761 * 214.98110 * 19 17 10 34 34 H 1.08998 * 117.50050 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6143 0.0910 11 6 1.5646 -4.8832 -0.2835 12 6 2.6256 -5.9822 -0.3685 13 1 3.4612 -5.6343 -0.9757 14 8 3.0904 -6.2983 0.9453 15 6 2.0158 -7.2313 -1.0079 16 7 3.0343 -8.2868 -1.0890 17 6 2.7907 -3.6970 1.4348 18 6 3.9553 -2.7581 1.7555 19 6 4.2114 -4.2526 1.5515 20 1 -0.4850 0.8401 0.0004 21 1 0.6756 -2.5866 -0.9211 22 1 0.5750 -2.5283 0.8551 23 1 1.0773 -4.7728 -1.2522 24 1 0.8223 -5.1522 0.4681 25 1 2.3984 -6.6153 1.5417 26 1 1.1801 -7.5793 -0.4007 27 1 1.6612 -6.9903 -2.0101 28 1 3.4249 -8.4831 -0.1797 29 1 2.6560 -9.1228 -1.5085 30 1 2.0927 -3.9268 2.2399 31 1 4.2857 -2.0792 0.9693 32 1 4.0237 -2.3698 2.7718 33 1 4.4483 -4.8477 2.4335 34 1 4.7099 -4.5572 0.6312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:26 Heat of formation + Delta-G solvation = -17.200085 kcal Electronic energy + Delta-G solvation = -15014.992026 eV Core-core repulsion = 12562.788675 eV Total energy + Delta-G solvation = -2452.203350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.60188 -36.40613 -33.70135 -33.43248 -32.27639 -29.10549 -26.47113 -23.58960 -22.15088 -21.42454 -21.15451 -19.46438 -16.60311 -16.30409 -15.83343 -15.34937 -14.66780 -14.51804 -14.25404 -13.93686 -13.64532 -12.66550 -12.33736 -12.23633 -11.79837 -11.31704 -11.24912 -10.82968 -10.71349 -10.67175 -10.40054 -10.05003 -9.84040 -9.32414 -9.07578 -8.79188 -8.65612 -8.35030 -7.25299 -5.96814 -3.96354 3.37372 3.40737 3.44133 4.32116 4.49848 4.67110 4.86321 4.91921 5.24199 5.24920 5.38928 5.61488 5.73294 5.75498 5.85980 5.96979 6.14958 6.28354 6.45235 6.54323 6.57799 6.88164 7.06263 7.11159 7.25307 7.38771 7.41852 7.89429 7.90922 8.15373 8.28001 8.60401 9.11364 9.66901 11.14317 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045481 B = 0.007744 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.491202 B = 3615.053256 C = 3988.198642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.052 3.948 3 Si 0.896 3.104 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.195 3.805 10 N -0.507 5.507 11 C 0.030 3.970 12 C 0.114 3.886 13 H 0.110 0.890 14 O -0.545 6.545 15 C 0.031 3.969 16 N -0.846 5.846 17 C 0.035 3.965 18 C -0.170 4.170 19 C -0.135 4.135 20 H 0.260 0.740 21 H 0.024 0.976 22 H -0.007 1.007 23 H 0.074 0.926 24 H 0.022 0.978 25 H 0.357 0.643 26 H 0.023 0.977 27 H 0.078 0.922 28 H 0.345 0.655 29 H 0.336 0.664 30 H 0.060 0.940 31 H 0.101 0.899 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.530 -13.024 1.457 13.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.148 4.148 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.536 4.536 8 H 0.086 0.914 9 C 0.070 3.930 10 N -0.232 5.232 11 C -0.099 4.099 12 C 0.054 3.946 13 H 0.128 0.872 14 O -0.348 6.348 15 C -0.101 4.101 16 N -0.376 5.376 17 C -0.074 4.074 18 C -0.207 4.207 19 C -0.172 4.172 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.011 0.989 23 H 0.093 0.907 24 H 0.040 0.960 25 H 0.203 0.797 26 H 0.042 0.958 27 H 0.097 0.903 28 H 0.159 0.841 29 H 0.147 0.853 30 H 0.078 0.922 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.705 -12.089 0.386 12.978 hybrid contribution -1.767 0.144 1.356 2.232 sum 2.939 -11.944 1.741 12.423 Atomic orbital electron populations 1.69952 1.06060 1.26692 1.51724 1.24989 0.94828 0.99229 0.95767 0.86592 0.79447 0.82922 0.78650 1.20231 1.21494 1.20259 1.21224 0.93739 0.89610 1.48983 0.91405 1.19709 0.89839 0.87596 0.95807 1.61922 1.35520 1.02285 1.23454 1.22651 0.94920 0.91906 1.00449 1.22007 0.97827 0.90913 0.83815 0.87173 1.86788 1.38233 1.87488 1.22291 1.22499 0.92715 0.93591 1.01293 1.58584 1.37007 1.12277 1.29747 1.21893 0.90117 1.04846 0.90545 1.23084 1.02791 0.93510 1.01316 1.22663 0.98487 0.94499 1.01574 0.93047 0.95784 0.98945 0.90730 0.96035 0.79722 0.95838 0.90325 0.84149 0.85257 0.92235 0.88064 0.90523 0.90505 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 2 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 3 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.50 -14.02 8.35 -34.44 -0.29 -14.31 16 8 H 0.07 1.89 5.52 -52.49 -0.29 1.60 16 9 C 0.20 5.13 4.74 -4.97 -0.02 5.10 16 10 N -0.51 -10.94 4.59 -228.08 -1.05 -11.98 16 11 C 0.03 0.53 4.76 -3.83 -0.02 0.51 16 12 C 0.11 1.63 2.77 -26.73 -0.07 1.55 16 13 H 0.11 1.84 7.90 -51.93 -0.41 1.43 16 14 O -0.54 -7.29 8.28 -35.23 -0.29 -7.59 16 15 C 0.03 0.36 6.47 -3.82 -0.02 0.33 16 16 N -0.85 -9.06 9.62 -10.37 -0.10 -9.16 16 17 C 0.04 0.70 3.90 -67.71 -0.26 0.44 16 18 C -0.17 -3.35 9.39 -26.73 -0.25 -3.61 16 19 C -0.13 -2.33 7.20 -26.73 -0.19 -2.52 16 20 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 21 H 0.02 0.67 7.84 -51.93 -0.41 0.26 16 22 H -0.01 -0.21 8.05 -51.93 -0.42 -0.63 16 23 H 0.07 1.30 7.88 -51.93 -0.41 0.89 16 24 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.36 3.86 9.05 45.56 0.41 4.27 16 26 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.35 3.52 8.38 -39.30 -0.33 3.19 16 29 H 0.34 2.89 9.08 -39.29 -0.36 2.53 16 30 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.10 2.21 6.20 -51.93 -0.32 1.88 16 32 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 34 H 0.09 1.59 7.42 -51.93 -0.39 1.21 16 LS Contribution 274.09 15.07 4.13 4.13 Total: -1.00 -30.43 274.09 -7.41 -37.84 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -4.58 Total: 7.34 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -1.23 Total: -11.10 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: -0.41 Total: -47.59 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.29 Total: -7.59 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.43 -7.41 -37.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.638 kcal (2) G-P(sol) polarization free energy of solvation -30.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds