Wall clock time and date at job start Mon Mar 30 2020 02:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99886 * 2 1 4 4 H 1.48500 * 109.47052 * 239.99624 * 3 2 1 5 5 H 1.48497 * 109.47461 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47018 * 120.00078 * 3 2 1 7 7 C 1.37881 * 119.99818 * 179.97438 * 2 1 3 8 8 H 1.07992 * 119.99620 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99813 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.46874 * 183.71988 * 9 7 2 11 11 C 1.46894 * 110.99995 * 196.04339 * 10 9 7 12 12 C 1.52998 * 109.47056 * 172.09182 * 11 10 9 13 13 H 1.08997 * 109.47137 * 310.55957 * 12 11 10 14 14 O 1.42904 * 109.47482 * 70.56417 * 12 11 10 15 15 C 1.53001 * 109.47023 * 190.55929 * 12 11 10 16 16 N 1.46906 * 109.47179 * 180.02562 * 15 12 11 17 17 C 1.46899 * 111.00047 * 72.08555 * 10 9 7 18 18 C 1.53000 * 117.50183 * 278.68966 * 17 10 9 19 19 C 1.53001 * 117.50053 * 210.06486 * 17 10 9 20 20 H 0.97000 * 119.99859 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47359 * 63.72256 * 9 7 2 22 22 H 1.08997 * 109.46745 * 303.71572 * 9 7 2 23 23 H 1.08999 * 109.47670 * 52.08924 * 11 10 9 24 24 H 1.09005 * 109.47177 * 292.08705 * 11 10 9 25 25 H 0.96697 * 114.00062 * 59.99356 * 14 12 11 26 26 H 1.08998 * 109.47630 * 299.99699 * 15 12 11 27 27 H 1.08999 * 109.47139 * 60.00530 * 15 12 11 28 28 H 1.00894 * 110.99977 * 56.04516 * 16 15 12 29 29 H 1.00895 * 110.99786 * 180.02562 * 16 15 12 30 30 H 1.09004 * 115.55060 * 64.39318 * 17 10 9 31 31 H 1.09001 * 117.49765 * 359.97438 * 18 17 10 32 32 H 1.09003 * 117.50137 * 145.01806 * 18 17 10 33 33 H 1.09000 * 117.49761 * 214.98110 * 19 17 10 34 34 H 1.08998 * 117.50050 * 359.97438 * 19 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6143 0.0910 11 6 1.5646 -4.8832 -0.2835 12 6 2.6256 -5.9822 -0.3685 13 1 3.4612 -5.6343 -0.9757 14 8 3.0904 -6.2983 0.9453 15 6 2.0158 -7.2313 -1.0079 16 7 3.0343 -8.2868 -1.0890 17 6 2.7907 -3.6970 1.4348 18 6 3.9553 -2.7581 1.7555 19 6 4.2114 -4.2526 1.5515 20 1 -0.4850 0.8401 0.0004 21 1 0.6756 -2.5866 -0.9211 22 1 0.5750 -2.5283 0.8551 23 1 1.0773 -4.7728 -1.2522 24 1 0.8223 -5.1522 0.4681 25 1 2.3984 -6.6153 1.5417 26 1 1.1801 -7.5793 -0.4007 27 1 1.6612 -6.9903 -2.0101 28 1 3.4249 -8.4831 -0.1797 29 1 2.6560 -9.1228 -1.5085 30 1 2.0927 -3.9268 2.2399 31 1 4.2857 -2.0792 0.9693 32 1 4.0237 -2.3698 2.7718 33 1 4.4483 -4.8477 2.4335 34 1 4.7099 -4.5572 0.6312 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531016.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:25 Heat of formation + Delta-G solvation = -42.342417 kcal Electronic energy + Delta-G solvation = -15016.082279 eV Core-core repulsion = 12562.788675 eV Total energy + Delta-G solvation = -2453.293604 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.98930 -37.76037 -35.38964 -34.52119 -34.19705 -30.62434 -28.26146 -25.01830 -24.03780 -22.92406 -22.34767 -21.11716 -18.60353 -17.32667 -17.02387 -16.85417 -16.50283 -15.97559 -15.70169 -15.40638 -14.85986 -14.40580 -13.91746 -13.63356 -13.35300 -13.06808 -12.76903 -12.70956 -12.52907 -12.28371 -11.84206 -11.68728 -11.42750 -11.09028 -10.83507 -10.54944 -10.19703 -9.55442 -9.00939 -8.16730 -6.24439 1.40752 1.43777 1.51286 2.41736 3.10829 3.15878 3.25835 3.54484 3.77660 4.10653 4.20130 4.30593 4.36397 4.45031 4.48949 4.67594 4.71986 4.88771 4.96849 5.04973 5.09938 5.23928 5.31454 5.42765 5.57518 5.76666 6.10314 6.25033 6.44735 6.66312 6.68640 6.91947 6.94038 7.44172 8.94237 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.045481 B = 0.007744 C = 0.007019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.491202 B = 3615.053256 C = 3988.198642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.001 4.001 3 Si 0.964 3.036 4 H -0.269 1.269 5 H -0.285 1.285 6 H -0.268 1.268 7 C -0.510 4.510 8 H 0.069 0.931 9 C 0.210 3.790 10 N -0.515 5.515 11 C 0.028 3.972 12 C 0.132 3.868 13 H 0.088 0.912 14 O -0.548 6.548 15 C 0.040 3.960 16 N -0.852 5.852 17 C 0.018 3.982 18 C -0.187 4.187 19 C -0.089 4.089 20 H 0.262 0.738 21 H -0.001 1.001 22 H -0.039 1.039 23 H 0.068 0.932 24 H 0.027 0.973 25 H 0.373 0.627 26 H 0.039 0.961 27 H 0.076 0.924 28 H 0.350 0.650 29 H 0.350 0.650 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.105 0.895 34 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -14.008 1.955 14.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.198 4.198 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.193 1.193 7 C -0.548 4.548 8 H 0.087 0.913 9 C 0.084 3.916 10 N -0.239 5.239 11 C -0.101 4.101 12 C 0.072 3.928 13 H 0.106 0.894 14 O -0.353 6.353 15 C -0.092 4.092 16 N -0.384 5.384 17 C -0.091 4.091 18 C -0.224 4.224 19 C -0.127 4.127 20 H 0.071 0.929 21 H 0.017 0.983 22 H -0.022 1.022 23 H 0.086 0.914 24 H 0.045 0.955 25 H 0.220 0.780 26 H 0.057 0.943 27 H 0.095 0.905 28 H 0.164 0.836 29 H 0.163 0.837 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.107 0.893 33 H 0.123 0.877 34 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.954 -13.112 0.887 14.428 hybrid contribution -2.165 0.380 1.217 2.513 sum 3.789 -12.731 2.104 13.449 Atomic orbital electron populations 1.70084 1.07683 1.27672 1.52674 1.25879 0.95670 1.03010 0.95279 0.85518 0.78213 0.78330 0.79080 1.19431 1.20998 1.19295 1.21548 0.93922 0.90698 1.48631 0.91345 1.19357 0.89811 0.89335 0.93097 1.61835 1.34486 1.02847 1.24783 1.22781 0.96115 0.91086 1.00088 1.21640 0.95793 0.90980 0.84346 0.89431 1.86715 1.39010 1.87484 1.22125 1.22303 0.93119 0.92603 1.01133 1.58524 1.36883 1.12770 1.30254 1.21964 0.91033 1.06529 0.89596 1.23101 1.03349 0.94777 1.01194 1.22584 0.95185 0.92644 1.02275 0.92934 0.98267 1.02161 0.91375 0.95469 0.77957 0.94254 0.90546 0.83633 0.83679 0.92434 0.90477 0.89338 0.87680 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 2 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 3 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.51 -29.31 8.35 25.60 0.21 -29.10 16 8 H 0.07 3.86 5.52 -2.91 -0.02 3.85 16 9 C 0.21 11.41 4.74 85.56 0.41 11.82 16 10 N -0.52 -22.46 4.59 -875.53 -4.02 -26.48 16 11 C 0.03 0.98 4.76 86.30 0.41 1.39 16 12 C 0.13 3.59 2.77 30.59 0.08 3.67 16 13 H 0.09 2.83 7.90 -2.39 -0.02 2.81 16 14 O -0.55 -13.23 8.28 -148.98 -1.23 -14.47 16 15 C 0.04 0.85 6.47 86.30 0.56 1.41 16 16 N -0.85 -16.09 9.62 -186.71 -1.80 -17.89 16 17 C 0.02 0.69 3.90 44.92 0.18 0.87 16 18 C -0.19 -7.23 9.39 30.60 0.29 -6.94 16 19 C -0.09 -2.89 7.20 30.60 0.22 -2.67 16 20 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 21 H 0.00 -0.04 7.84 -2.39 -0.02 -0.06 16 22 H -0.04 -2.34 8.05 -2.39 -0.02 -2.36 16 23 H 0.07 2.40 7.88 -2.39 -0.02 2.39 16 24 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 25 H 0.37 6.89 9.05 -74.06 -0.67 6.22 16 26 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.35 6.14 8.38 -89.70 -0.75 5.38 16 29 H 0.35 5.08 9.08 -89.70 -0.81 4.27 16 30 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.08 3.36 6.20 -2.39 -0.01 3.35 16 32 H 0.09 3.16 8.14 -2.39 -0.02 3.14 16 33 H 0.10 2.87 8.09 -2.39 -0.02 2.85 16 34 H 0.08 2.83 7.42 -2.39 -0.02 2.81 16 Total: -1.00 -65.77 274.09 -3.05 -68.81 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -1.13 Total: 19.23 kcal Atomic # 6 Polarization: -21.99 SS G_CDS: 2.82 Total: -19.17 kcal Atomic # 7 Polarization: -96.18 SS G_CDS: -5.53 Total: -101.72 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.23 Total: -14.47 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -65.77 -3.05 -68.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531016.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.471 kcal (2) G-P(sol) polarization free energy of solvation -65.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds