Wall clock time and date at job start Mon Mar 30 2020 03:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31598 * 1 3 3 Si 1.86801 * 119.99771 * 2 1 4 4 H 1.48499 * 109.47173 * 269.99935 * 3 2 1 5 5 H 1.48494 * 109.47377 * 30.00231 * 3 2 1 6 6 H 1.48503 * 109.46851 * 150.00374 * 3 2 1 7 7 C 1.38787 * 119.99996 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99819 * 179.97438 * 7 2 1 9 9 N 1.36851 * 119.99650 * 359.97438 * 7 2 1 10 10 C 1.39324 * 119.99701 * 180.02562 * 9 7 2 11 11 C 1.39112 * 120.06146 * 359.97438 * 10 9 7 12 12 C 1.38044 * 119.96781 * 180.02562 * 11 10 9 13 13 C 1.38410 * 120.10084 * 0.02562 * 12 11 10 14 14 Cl 1.73597 * 119.93573 * 180.27383 * 13 12 11 15 15 C 1.38645 * 120.13060 * 0.02562 * 13 12 11 16 16 F 1.35101 * 119.98255 * 180.02562 * 15 13 12 17 17 C 1.38264 * 120.02626 * 0.02562 * 15 13 12 18 18 H 0.97006 * 119.99897 * 359.97438 * 1 2 3 19 19 H 0.96994 * 120.00219 * 359.97438 * 9 7 2 20 20 H 1.07996 * 120.02030 * 359.97438 * 11 10 9 21 21 H 1.07997 * 119.95195 * 179.97438 * 12 11 10 22 22 H 1.08002 * 120.05024 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3160 0.0000 0.0000 3 14 2.2499 1.6178 0.0000 4 1 2.4974 2.0465 -1.4001 5 1 1.4474 2.6527 0.7000 6 1 3.5475 1.4402 0.7000 7 6 2.0099 -1.2019 -0.0005 8 1 3.0899 -1.2019 -0.0010 9 7 1.3256 -2.3871 -0.0005 10 6 2.0222 -3.5936 -0.0005 11 6 3.4133 -3.5952 -0.0011 12 6 4.1016 -4.7918 -0.0016 13 6 3.4097 -5.9905 -0.0021 14 17 4.2795 -7.4928 0.0044 15 6 2.0232 -5.9938 -0.0027 16 9 1.3509 -7.1657 -0.0027 17 6 1.3285 -4.7984 -0.0032 18 1 -0.4850 0.8401 0.0004 19 1 0.3557 -2.3870 0.0002 20 1 3.9546 -2.6607 -0.0019 21 1 5.1815 -4.7926 -0.0024 22 1 0.2485 -4.8006 -0.0041 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042580177.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:43:02 Heat of formation + Delta-G solvation = -34.681406 kcal Electronic energy + Delta-G solvation = -11636.579280 eV Core-core repulsion = 9131.481891 eV Total energy + Delta-G solvation = -2505.097389 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 215.021 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -48.22478 -38.43469 -35.97036 -34.80856 -32.04063 -29.86459 -27.92466 -24.89742 -22.24581 -21.05165 -18.06859 -17.34411 -15.84179 -15.32771 -15.16116 -14.98573 -14.30757 -13.81569 -13.06489 -12.53111 -12.46050 -12.03615 -11.74851 -11.33440 -11.17541 -10.99353 -10.53487 -10.51778 -9.98844 -9.94443 -8.86216 -8.12578 -6.95714 -6.81957 -3.99491 2.04474 2.12617 2.98507 3.02624 3.04952 3.08016 3.85547 4.31726 4.76973 4.95872 5.18247 5.52977 6.01700 6.10540 6.38926 6.72097 6.82092 6.90933 7.14290 7.16602 7.42738 7.71359 8.49208 9.03180 9.23531 10.33302 Molecular weight = 215.02amu Principal moments of inertia in cm(-1) A = 0.062721 B = 0.007145 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.315299 B = 3917.758181 C = 4354.229760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.024 3.976 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.307 4.307 8 H 0.108 0.892 9 N -0.537 5.537 10 C 0.223 3.777 11 C -0.219 4.219 12 C -0.026 4.026 13 C -0.202 4.202 14 Cl -0.103 7.103 15 C 0.167 3.833 16 F -0.146 7.146 17 C -0.272 4.272 18 H 0.279 0.721 19 H 0.403 0.597 20 H 0.128 0.872 21 H 0.121 0.879 22 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 -4.578 0.007 6.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.181 4.181 3 Si 0.763 3.237 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.190 1.190 7 C -0.436 4.436 8 H 0.126 0.874 9 N -0.135 5.135 10 C 0.097 3.903 11 C -0.243 4.243 12 C -0.046 4.046 13 C -0.233 4.233 14 Cl -0.075 7.075 15 C 0.146 3.854 16 F -0.124 7.124 17 C -0.298 4.298 18 H 0.090 0.910 19 H 0.238 0.762 20 H 0.145 0.855 21 H 0.139 0.861 22 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.252 -4.199 0.013 5.976 hybrid contribution -0.201 0.503 -0.005 0.542 sum 4.051 -3.696 0.007 5.484 Atomic orbital electron populations 1.69685 1.06172 1.29200 1.46607 1.25420 0.95811 1.00352 0.96544 0.85736 0.79196 0.80006 0.78791 1.19929 1.20474 1.19028 1.19844 0.93379 0.82439 1.47965 0.87430 1.41154 1.08496 1.02100 1.61756 1.17484 0.91476 0.85491 0.95884 1.20403 0.92366 0.97356 1.14217 1.20343 0.98731 0.89801 0.95770 1.19981 0.89618 0.86737 1.26991 1.98256 1.76915 1.34172 1.98125 1.16884 0.87834 0.80565 1.00116 1.91421 1.80651 1.46473 1.93877 1.19969 0.99209 0.89779 1.20794 0.91048 0.76194 0.85453 0.86123 0.85979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.19 13.05 55.49 0.72 -21.46 14 2 C 0.02 0.57 5.50 -17.45 -0.10 0.48 14 3 Si 0.94 18.55 29.55 -169.99 -5.02 13.53 14 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 14 5 H -0.28 -5.55 7.11 56.52 0.40 -5.14 14 6 H -0.27 -5.13 7.11 56.52 0.40 -4.73 14 7 C -0.31 -7.33 9.56 -15.11 -0.14 -7.48 14 8 H 0.11 2.44 5.68 -52.49 -0.30 2.14 14 9 N -0.54 -12.43 5.44 -9.60 -0.05 -12.48 14 10 C 0.22 4.77 6.62 -83.84 -0.55 4.21 14 11 C -0.22 -4.38 9.30 -39.33 -0.37 -4.74 14 12 C -0.03 -0.48 9.82 -39.59 -0.39 -0.86 14 13 C -0.20 -3.85 6.33 -39.37 -0.25 -4.10 14 14 Cl -0.10 -1.76 28.61 -51.86 -1.48 -3.24 14 15 C 0.17 3.33 7.27 -39.42 -0.29 3.04 14 16 F -0.15 -2.83 16.83 2.25 0.04 -2.80 14 17 C -0.27 -5.52 9.88 -39.28 -0.39 -5.90 14 18 H 0.28 6.63 8.31 -40.82 -0.34 6.29 14 19 H 0.40 9.44 7.90 -40.82 -0.32 9.12 14 20 H 0.13 2.46 5.96 -52.49 -0.31 2.15 14 21 H 0.12 1.89 8.06 -52.49 -0.42 1.46 14 22 H 0.12 2.32 8.06 -52.49 -0.42 1.90 14 LS Contribution 223.02 15.07 3.36 3.36 Total: -1.00 -24.43 223.02 -5.82 -30.25 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -0.91 Total: 8.20 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -2.47 Total: -15.35 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.67 Total: -33.95 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -5.02 Total: 13.53 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -1.48 Total: -3.24 kcal Total LS contribution 3.36 Total: 3.36 kcal Total: -24.43 -5.82 -30.25 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042580177.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.431 kcal (2) G-P(sol) polarization free energy of solvation -24.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds