Wall clock time and date at job start Mon Mar 30 2020 03:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46990 * 2 1 4 4 C 1.52995 * 109.47377 * 239.99521 * 2 1 3 5 5 N 1.46898 * 109.47239 * 184.55355 * 4 2 1 6 6 C 1.47022 * 110.99827 * 170.29011 * 5 4 2 7 7 C 1.53095 * 109.25312 * 182.34814 * 6 5 4 8 8 O 1.43022 * 109.29437 * 303.21552 * 7 6 5 9 9 C 1.43017 * 113.73801 * 58.65278 * 8 7 6 10 10 C 1.47014 * 110.99889 * 293.96700 * 5 4 2 11 11 N 1.46504 * 109.47104 * 119.99392 * 2 1 3 12 12 C 1.36936 * 120.00077 * 279.24559 * 11 2 1 13 13 H 1.08004 * 120.00080 * 359.97438 * 12 11 2 14 14 C 1.38809 * 119.99951 * 179.97438 * 12 11 2 15 15 N 1.31619 * 120.00410 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 119.99967 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46988 * 90.00348 * 16 14 12 18 18 H 1.48498 * 109.47401 * 209.99948 * 16 14 12 19 19 H 1.48493 * 109.47337 * 330.00307 * 16 14 12 20 20 H 1.08998 * 109.47467 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47430 * 300.00502 * 1 2 3 22 22 H 1.09005 * 109.46984 * 60.00389 * 1 2 3 23 23 H 1.09004 * 109.47305 * 64.54875 * 4 2 1 24 24 H 1.09007 * 109.47017 * 304.54914 * 4 2 1 25 25 H 1.09004 * 109.46826 * 62.43876 * 6 5 4 26 26 H 1.08998 * 109.54121 * 302.30317 * 6 5 4 27 27 H 1.09001 * 109.50834 * 183.26167 * 7 6 5 28 28 H 1.09001 * 109.51253 * 63.17369 * 7 6 5 29 29 H 1.09001 * 109.50476 * 61.26016 * 9 8 7 30 30 H 1.08999 * 109.50686 * 181.35190 * 9 8 7 31 31 H 1.09005 * 109.50510 * 57.67325 * 10 5 4 32 32 H 1.09003 * 109.54423 * 297.56877 * 10 5 4 33 33 H 0.96998 * 120.00018 * 99.24177 * 11 2 1 34 34 H 0.96993 * 120.00315 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 7 3.5049 -0.8172 -1.1954 6 6 4.0143 -1.6999 -2.2551 7 6 5.5353 -1.8176 -2.1263 8 8 6.1167 -0.5121 -2.1818 9 6 5.6433 0.3728 -1.1628 10 6 4.1235 0.5135 -1.2825 11 7 2.0183 -0.6905 1.1963 12 6 2.0669 -0.0312 2.3955 13 1 1.7456 0.9979 2.4594 14 6 2.5291 -0.6856 3.5290 15 7 2.9212 -1.9397 3.4512 16 14 2.5961 0.2139 5.1648 17 1 1.3106 0.0281 5.8849 18 1 3.7065 -0.3328 5.9854 19 1 2.8242 1.6614 4.9247 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.7448 -0.1627 -2.1373 24 1 1.6117 -1.7228 -1.2907 25 1 3.7629 -1.2805 -3.2293 26 1 3.5631 -2.6871 -2.1556 27 1 5.9240 -2.4242 -2.9443 28 1 5.7848 -2.2869 -1.1747 29 1 5.8953 -0.0326 -0.1829 30 1 6.1106 1.3501 -1.2836 31 1 3.7514 1.1416 -0.4731 32 1 3.8745 0.9694 -2.2408 33 1 2.3072 -1.6147 1.1389 34 1 3.2438 -2.3971 4.2433 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049505319.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:52 Heat of formation + Delta-G solvation = -27.894417 kcal Electronic energy + Delta-G solvation = -15146.333758 eV Core-core repulsion = 12693.666667 eV Total energy + Delta-G solvation = -2452.667091 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.25488 -36.48868 -34.16765 -31.84947 -30.87016 -28.67535 -27.44007 -24.29051 -23.71879 -23.13825 -20.28002 -19.45543 -17.11755 -16.24903 -15.83641 -15.04002 -14.77900 -14.41995 -14.37974 -13.74485 -13.58892 -13.03988 -12.23181 -12.16135 -11.78240 -11.59358 -11.19541 -11.14317 -11.05172 -10.77900 -10.60136 -10.33551 -10.12064 -9.85331 -9.55473 -9.33165 -8.80399 -7.86771 -6.79370 -5.64591 -2.90691 3.48227 3.53423 3.55013 4.04218 4.20754 4.67740 5.14295 5.27448 5.31064 5.40568 5.50703 5.61533 5.66751 5.73719 5.81100 5.94279 6.02402 6.03887 6.09029 6.15460 6.26462 6.31108 6.45791 6.69824 6.86424 7.06420 7.32068 7.45673 7.48279 7.78142 8.54193 9.65908 10.27833 10.64469 11.58087 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.029370 B = 0.009310 C = 0.008038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.126140 B = 3006.853111 C = 3482.471040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.176 3.824 3 H 0.039 0.961 4 C 0.055 3.945 5 N -0.515 5.515 6 C 0.019 3.981 7 C 0.065 3.935 8 O -0.394 6.394 9 C 0.064 3.936 10 C 0.025 3.975 11 N -0.709 5.709 12 C -0.230 4.230 13 H 0.065 0.935 14 C -0.014 4.014 15 N -0.930 5.930 16 Si 0.901 3.099 17 H -0.292 1.292 18 H -0.293 1.293 19 H -0.284 1.284 20 H 0.047 0.953 21 H 0.055 0.945 22 H 0.033 0.967 23 H 0.026 0.974 24 H 0.071 0.929 25 H 0.032 0.968 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.029 0.971 33 H 0.388 0.612 34 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.748 2.259 -11.645 11.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.065 3.935 3 H 0.057 0.943 4 C -0.074 4.074 5 N -0.240 5.240 6 C -0.109 4.109 7 C -0.012 4.012 8 O -0.312 6.312 9 C -0.013 4.013 10 C -0.103 4.103 11 N -0.351 5.351 12 C -0.362 4.362 13 H 0.083 0.917 14 C -0.210 4.210 15 N -0.579 5.579 16 Si 0.733 3.267 17 H -0.220 1.220 18 H -0.220 1.220 19 H -0.210 1.210 20 H 0.066 0.934 21 H 0.074 0.926 22 H 0.052 0.948 23 H 0.045 0.955 24 H 0.090 0.910 25 H 0.050 0.950 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.047 0.953 33 H 0.222 0.778 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.036 2.225 -11.190 11.589 hybrid contribution -0.435 0.420 0.409 0.730 sum 1.601 2.644 -10.781 11.216 Atomic orbital electron populations 1.22434 0.99365 1.00889 0.99846 1.20198 0.91425 0.95115 0.86773 0.94290 1.22430 0.86647 1.00871 0.97426 1.62021 1.06096 1.10761 1.45122 1.22754 0.96584 0.98577 0.93008 1.22620 0.91667 0.84765 1.02185 1.87899 1.66529 1.23100 1.53706 1.22667 0.93001 0.93755 0.91863 1.22726 0.95448 0.91477 1.00690 1.42215 1.76325 1.13594 1.02942 1.19191 1.35176 0.95475 0.86329 0.91656 1.24669 1.02471 0.96223 0.97657 1.69671 1.49908 1.10073 1.28277 0.86280 0.77069 0.78690 0.84696 1.22002 1.21950 1.20979 0.93422 0.92607 0.94820 0.95546 0.91031 0.94989 0.89949 0.89140 0.91951 0.91639 0.89046 0.88763 0.95256 0.77796 0.93791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.43 37.16 0.35 -2.65 16 2 C 0.18 3.50 2.68 -67.93 -0.18 3.32 16 3 H 0.04 0.80 6.69 -51.93 -0.35 0.45 16 4 C 0.05 0.93 4.49 -3.83 -0.02 0.92 16 5 N -0.52 -8.99 4.46 -234.30 -1.05 -10.04 16 6 C 0.02 0.28 5.65 -3.71 -0.02 0.26 16 7 C 0.06 0.92 7.01 37.21 0.26 1.18 16 8 O -0.39 -6.25 10.83 -35.23 -0.38 -6.63 16 9 C 0.06 1.00 7.01 37.21 0.26 1.26 16 10 C 0.02 0.41 5.43 -3.71 -0.02 0.39 16 11 N -0.71 -17.75 4.90 -53.43 -0.26 -18.01 16 12 C -0.23 -6.38 9.89 -15.06 -0.15 -6.53 16 13 H 0.07 1.77 7.83 -52.48 -0.41 1.36 16 14 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 15 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 16 Si 0.90 22.65 29.55 -169.99 -5.02 17.62 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 18 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 19 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 20 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 22 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.03 0.41 8.12 -51.93 -0.42 -0.02 16 24 H 0.07 1.21 8.04 -51.93 -0.42 0.79 16 25 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 27 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.09 1.68 6.47 -51.93 -0.34 1.35 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.39 10.54 7.76 -40.82 -0.32 10.23 16 34 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 275.81 15.07 4.16 4.16 Total: -1.00 -30.52 275.81 -7.05 -37.57 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -5.61 Total: 5.37 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 0.39 Total: -2.37 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.58 Total: -55.72 kcal Atomic # 8 Polarization: -6.25 SS G_CDS: -0.38 Total: -6.63 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -30.52 -7.05 -37.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049505319.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.679 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds