Wall clock time and date at job start Mon Mar 30 2020 02:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99892 * 2 1 4 4 H 1.08996 * 109.47554 * 30.00144 * 3 2 1 5 5 C 1.53002 * 109.47081 * 269.99555 * 3 2 1 6 6 C 1.52996 * 109.46972 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47131 * 60.00459 * 6 5 3 8 8 C 1.52999 * 109.46991 * 299.99311 * 7 6 5 9 9 H 1.09000 * 109.47160 * 180.02562 * 8 7 6 10 10 O 1.42895 * 109.47485 * 300.00609 * 8 7 6 11 11 C 1.42904 * 113.99556 * 269.99454 * 10 8 7 12 12 C 1.50706 * 109.46875 * 179.97438 * 11 10 8 13 13 H 1.07999 * 119.99893 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99642 * 180.02562 * 12 11 10 15 15 N 1.31513 * 120.00391 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99783 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47538 * 89.99121 * 16 14 12 18 18 H 1.48497 * 109.47001 * 209.99636 * 16 14 12 19 19 H 1.48500 * 109.47186 * 329.99314 * 16 14 12 20 20 C 1.52997 * 109.46920 * 150.00077 * 3 2 1 21 21 H 1.09000 * 109.47306 * 59.99957 * 1 2 3 22 22 H 1.08996 * 109.47154 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47123 * 300.00251 * 1 2 3 24 24 H 1.08996 * 109.47407 * 300.00679 * 5 3 2 25 25 H 1.09000 * 109.46986 * 60.00450 * 5 3 2 26 26 H 1.09001 * 109.46993 * 180.02562 * 6 5 3 27 27 H 1.09000 * 109.47380 * 299.99696 * 6 5 3 28 28 H 1.09002 * 109.47153 * 179.97438 * 7 6 5 29 29 H 1.08993 * 109.47194 * 60.00154 * 7 6 5 30 30 H 1.08991 * 109.47758 * 300.00431 * 11 10 8 31 31 H 1.09008 * 109.46846 * 60.00278 * 11 10 8 32 32 H 0.96994 * 120.00191 * 180.02562 * 15 14 12 33 33 H 1.09001 * 109.47502 * 60.00157 * 20 3 2 34 34 H 1.09001 * 109.47289 * 299.99954 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 2.8406 3.1687 -1.4425 7 6 4.1893 3.1259 -0.7214 8 6 3.9818 2.6602 0.7211 9 1 4.9427 2.6301 1.2349 10 8 3.1101 3.5701 1.3948 11 6 3.7858 4.6481 2.0457 12 6 2.7754 5.5407 2.7191 13 1 1.7226 5.3082 2.6560 14 6 3.1950 6.6546 3.4149 15 7 4.4770 6.9379 3.4914 16 14 1.9427 7.7606 4.2503 17 1 1.7116 7.2866 5.6386 18 1 2.4558 9.1537 4.2818 19 1 0.6650 7.7206 3.4946 20 6 3.3589 1.2632 0.7212 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 2.8829 1.0774 -1.9563 25 1 1.2569 1.8014 -1.9564 26 1 2.9880 3.5008 -2.4702 27 1 2.1757 3.8629 -0.9286 28 1 4.6333 4.1214 -0.7218 29 1 4.8542 2.4319 -1.2354 30 1 4.4728 4.2488 2.7917 31 1 4.3449 5.2244 1.3084 32 1 4.7722 7.7213 3.9812 33 1 4.0242 0.5693 0.2074 34 1 3.2111 0.9313 1.7489 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000069848644.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:17 Heat of formation + Delta-G solvation = -118.102246 kcal Electronic energy + Delta-G solvation = -14918.858991 eV Core-core repulsion = 12429.987444 eV Total energy + Delta-G solvation = -2488.871547 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.136 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.14513 -37.04689 -34.64763 -32.61838 -30.16923 -29.21524 -26.98268 -26.25688 -22.50034 -22.17572 -21.73850 -19.17250 -16.75092 -16.17410 -15.69585 -15.19187 -14.86679 -14.48582 -14.31385 -13.93803 -13.30870 -12.81641 -12.48446 -12.11930 -11.88382 -11.85679 -11.52703 -11.02011 -10.92529 -10.82082 -10.65898 -10.34117 -10.31395 -10.14741 -9.77048 -9.22414 -9.08683 -8.78943 -8.13828 -6.11851 -4.13509 3.29065 3.34249 3.39104 3.94443 4.33653 4.82866 5.03941 5.22367 5.24646 5.33589 5.40005 5.47341 5.60226 5.63009 5.70370 5.76760 5.84731 5.90816 5.98844 6.16645 6.25400 6.33313 6.50037 6.54390 6.63849 6.78481 7.12961 7.43445 7.44898 7.78670 8.15500 8.58774 9.00187 9.51459 10.99617 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.037183 B = 0.007318 C = 0.006717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 752.849881 B = 3825.193676 C = 4167.301691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.092 3.908 4 H 0.075 0.925 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.140 4.140 8 C 0.090 3.910 9 H 0.056 0.944 10 O -0.386 6.386 11 C 0.195 3.805 12 C -0.514 4.514 13 H 0.065 0.935 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.906 3.094 17 H -0.279 1.279 18 H -0.285 1.285 19 H -0.272 1.272 20 C -0.107 4.107 21 H 0.037 0.963 22 H 0.079 0.921 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.004 0.996 31 H 0.005 0.995 32 H 0.264 0.736 33 H 0.071 0.929 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.635 -9.928 -8.110 13.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.312 6.312 3 C 0.035 3.965 4 H 0.093 0.907 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.178 4.178 8 C 0.031 3.969 9 H 0.074 0.926 10 O -0.306 6.306 11 C 0.121 3.879 12 C -0.553 4.553 13 H 0.083 0.917 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.733 3.267 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.145 4.145 21 H 0.056 0.944 22 H 0.098 0.902 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.022 0.978 31 H 0.023 0.977 32 H 0.073 0.927 33 H 0.090 0.910 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.598 -9.971 -8.028 13.297 hybrid contribution -0.394 0.960 0.447 1.130 sum -3.992 -9.011 -7.582 12.435 Atomic orbital electron populations 1.22719 0.81717 1.01959 1.00017 1.87841 1.19224 1.29015 1.95143 1.22108 0.95479 0.83685 0.95256 0.90728 1.21976 1.00646 0.97482 0.97059 1.21353 0.97386 0.96445 0.99638 1.22023 0.97323 1.01792 0.96679 1.21797 0.93722 0.89228 0.92154 0.92573 1.87878 1.34052 1.39025 1.69653 1.20226 0.93248 0.83565 0.90870 1.21056 0.94007 1.08106 1.32096 0.91653 1.24940 0.95619 0.97523 0.96383 1.69957 1.13901 1.27633 1.42250 0.86364 0.81145 0.79414 0.79737 1.20473 1.21074 1.19669 1.21638 0.95496 0.96301 1.01027 0.94411 0.90245 0.93947 0.91890 0.92491 0.92536 0.90562 0.91456 0.92124 0.97802 0.97699 0.92662 0.90994 0.91036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.82 101.05 1.09 1.49 16 2 O -0.39 -6.02 10.35 -35.23 -0.36 -6.38 16 3 C 0.09 1.47 2.47 -26.73 -0.07 1.40 16 4 H 0.07 1.33 7.33 -51.93 -0.38 0.95 16 5 C -0.13 -1.91 5.54 -26.73 -0.15 -2.06 16 6 C -0.11 -1.71 5.78 -26.73 -0.15 -1.87 16 7 C -0.14 -2.30 5.63 -26.73 -0.15 -2.45 16 8 C 0.09 1.68 2.92 -26.75 -0.08 1.60 16 9 H 0.06 1.05 7.78 -51.93 -0.40 0.64 16 10 O -0.39 -9.05 8.62 -35.23 -0.30 -9.35 16 11 C 0.20 5.28 5.50 36.01 0.20 5.48 16 12 C -0.51 -15.02 9.43 -34.44 -0.32 -15.35 16 13 H 0.07 1.89 7.81 -52.49 -0.41 1.48 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 16 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 C -0.11 -1.75 5.31 -26.75 -0.14 -1.89 16 21 H 0.04 0.42 7.87 -51.93 -0.41 0.01 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.06 0.75 7.87 -51.93 -0.41 0.34 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 1.36 7.68 -51.93 -0.40 0.96 16 28 H 0.07 1.19 7.87 -51.93 -0.41 0.78 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.00 0.12 8.08 -51.93 -0.42 -0.30 16 31 H 0.01 0.14 7.87 -51.92 -0.41 -0.26 16 32 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 277.38 15.07 4.18 4.18 Total: -1.00 -30.45 277.38 -6.38 -36.84 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.74 Total: -3.85 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 0.13 Total: -12.13 kcal Atomic # 7 Polarization: -26.81 SS G_CDS: 0.74 Total: -26.07 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.67 Total: -15.74 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.45 -6.38 -36.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000069848644.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.266 kcal (2) G-P(sol) polarization free energy of solvation -30.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds