Wall clock time and date at job start Mon Mar 30 2020 02:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48508 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47196 * 299.99173 * 3 2 1 6 6 H 1.48497 * 109.47565 * 59.99552 * 3 2 1 7 7 C 1.38815 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 196.89924 * 7 2 1 9 9 N 1.36935 * 119.99552 * 17.18837 * 7 2 1 10 10 C 1.47072 * 120.88769 * 26.56194 * 9 7 2 11 11 C 1.53689 * 108.28061 * 128.75549 * 10 9 7 12 12 N 1.46908 * 109.25591 * 54.08328 * 11 10 9 13 13 C 1.46899 * 110.99894 * 172.60742 * 12 11 10 14 14 C 1.53003 * 109.47336 * 294.30296 * 13 12 11 15 15 C 1.53002 * 109.47070 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47159 * 179.97438 * 15 14 13 17 17 C 1.46895 * 111.26905 * 296.75534 * 12 11 10 18 18 C 1.47082 * 120.87800 * 206.84012 * 9 7 2 19 19 H 0.97002 * 120.00194 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.62781 * 248.52649 * 10 9 7 21 21 H 1.09007 * 109.62956 * 9.10346 * 10 9 7 22 22 H 1.09005 * 109.64961 * 294.08168 * 11 10 9 23 23 H 1.09006 * 109.42428 * 173.94823 * 11 10 9 24 24 H 1.09007 * 109.47250 * 54.30048 * 13 12 11 25 25 H 1.09001 * 109.47017 * 174.30504 * 13 12 11 26 26 H 1.08999 * 109.46978 * 299.99816 * 14 13 12 27 27 H 1.09001 * 109.46898 * 60.00135 * 14 13 12 28 28 H 1.08995 * 109.47519 * 300.00136 * 15 14 13 29 29 H 1.09005 * 109.46888 * 59.99846 * 15 14 13 30 30 H 0.96698 * 114.00326 * 180.02562 * 16 15 14 31 31 H 1.08994 * 109.49506 * 303.14713 * 17 12 11 32 32 H 1.08994 * 109.51398 * 183.07413 * 17 12 11 33 33 H 1.09003 * 109.62976 * 350.89624 * 18 9 7 34 34 H 1.08999 * 109.62701 * 111.47408 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2223 0.2724 9 7 1.3713 -2.3617 -0.3494 10 6 0.2077 -2.3408 -1.2486 11 6 0.4533 -3.3532 -2.3785 12 7 0.7628 -4.6653 -1.7945 13 6 0.8322 -5.7009 -2.8340 14 6 -0.5515 -5.8896 -3.4592 15 6 -0.4790 -6.9679 -4.5422 16 8 -1.7714 -7.1446 -5.1258 17 6 2.0052 -4.6206 -1.0121 18 6 1.8269 -3.6606 0.1689 19 1 -0.4850 0.8400 -0.0004 20 1 -0.6889 -2.6171 -0.6937 21 1 0.0880 -1.3424 -1.6695 22 1 1.2909 -3.0216 -2.9922 23 1 -0.4417 -3.4318 -2.9957 24 1 1.5404 -5.3957 -3.6044 25 1 1.1612 -6.6403 -2.3895 26 1 -1.2596 -6.1949 -2.6889 27 1 -0.8805 -4.9503 -3.9036 28 1 0.2291 -6.6623 -5.3125 29 1 -0.1497 -7.9074 -4.0982 30 1 -1.8004 -7.8152 -5.8218 31 1 2.8211 -4.2713 -1.6448 32 1 2.2362 -5.6181 -0.6384 33 1 2.7784 -3.5353 0.6858 34 1 1.0830 -4.0613 0.8574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070069924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:03 Heat of formation + Delta-G solvation = -24.851888 kcal Electronic energy + Delta-G solvation = -14791.752569 eV Core-core repulsion = 12339.217412 eV Total energy + Delta-G solvation = -2452.535157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.30241 -36.97206 -34.67473 -32.18046 -30.47313 -29.85567 -26.76308 -24.28236 -22.81845 -22.30558 -20.70926 -19.06555 -17.41896 -16.72822 -15.68581 -15.24819 -14.55784 -14.29536 -13.72986 -13.59168 -13.37829 -13.26249 -12.84381 -12.30233 -11.67114 -11.36436 -11.05420 -11.02112 -10.91479 -10.72215 -10.37963 -10.23932 -10.05128 -9.98242 -9.69442 -9.52469 -8.47904 -7.77693 -6.63046 -5.75122 -3.16385 3.38891 3.46512 3.48792 3.99552 4.51922 4.64079 4.98650 5.19564 5.35475 5.41276 5.44596 5.49960 5.61876 5.79147 5.94397 5.99020 6.17753 6.21834 6.28192 6.38122 6.40070 6.60777 6.73699 6.96977 7.29409 7.50701 7.66632 7.69922 7.75278 7.85915 8.46777 9.24361 9.87952 10.46952 11.33668 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.053493 B = 0.006534 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.308958 B = 4284.435683 C = 4570.138519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.251 4.251 8 H 0.066 0.934 9 N -0.596 5.596 10 C 0.178 3.822 11 C 0.032 3.968 12 N -0.533 5.533 13 C 0.059 3.941 14 C -0.118 4.118 15 C 0.078 3.922 16 O -0.574 6.574 17 C 0.045 3.955 18 C 0.148 3.852 19 H 0.253 0.747 20 H 0.027 0.973 21 H 0.088 0.912 22 H 0.024 0.976 23 H 0.063 0.937 24 H 0.026 0.974 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.071 0.929 28 H 0.042 0.958 29 H 0.044 0.956 30 H 0.376 0.624 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.145 -12.134 -7.857 14.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.732 3.268 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.320 5.320 10 C 0.052 3.948 11 C -0.097 4.097 12 N -0.258 5.258 13 C -0.070 4.070 14 C -0.156 4.156 15 C 0.000 4.000 16 O -0.379 6.379 17 C -0.084 4.084 18 C 0.021 3.979 19 H 0.063 0.937 20 H 0.045 0.955 21 H 0.106 0.894 22 H 0.042 0.958 23 H 0.082 0.918 24 H 0.044 0.956 25 H 0.086 0.914 26 H 0.096 0.904 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.222 0.778 31 H 0.045 0.955 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.529 -11.618 -7.076 13.614 hybrid contribution 1.256 0.597 -0.997 1.711 sum 1.785 -11.021 -8.073 13.778 Atomic orbital electron populations 1.70041 1.05225 1.25350 1.54185 1.25026 0.95297 0.98347 1.01097 0.86233 0.79305 0.84030 0.77279 1.20326 1.21588 1.21703 1.19240 0.92589 0.84843 1.41428 0.91633 1.44154 1.34453 1.01283 1.52061 1.20959 0.88948 0.96548 0.88350 1.23044 0.98752 0.89318 0.98593 1.61920 1.34657 1.05862 1.23353 1.21943 0.95314 0.96137 0.93602 1.21518 0.98205 0.98618 0.97246 1.22160 0.84199 0.98310 0.95351 1.86510 1.31527 1.63142 1.56743 1.22611 0.89629 0.99351 0.96856 1.20982 0.97757 0.86524 0.92590 0.93668 0.95502 0.89400 0.95791 0.91845 0.95611 0.91432 0.90420 0.91003 0.93974 0.93812 0.77798 0.95520 0.92094 0.92632 0.95656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.77 11.16 55.49 0.62 -26.15 16 2 C 0.00 0.02 4.93 -17.43 -0.09 -0.07 16 3 Si 0.90 21.97 29.59 -169.99 -5.03 16.94 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 7 C -0.25 -7.08 9.63 -15.06 -0.15 -7.22 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.60 -15.57 3.03 -171.74 -0.52 -16.09 16 10 C 0.18 4.45 5.45 -3.37 -0.02 4.44 16 11 C 0.03 0.65 5.48 -3.46 -0.02 0.63 16 12 N -0.53 -9.90 4.63 -234.02 -1.08 -10.98 16 13 C 0.06 0.86 4.96 -3.82 -0.02 0.84 16 14 C -0.12 -1.64 5.52 -26.73 -0.15 -1.79 16 15 C 0.08 0.86 7.05 37.16 0.26 1.12 16 16 O -0.57 -6.61 13.66 -35.23 -0.48 -7.09 16 17 C 0.04 0.83 5.62 -3.70 -0.02 0.81 16 18 C 0.15 3.25 6.69 -3.60 -0.02 3.23 16 19 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 20 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 21 H 0.09 2.41 6.12 -51.93 -0.32 2.10 16 22 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 1.19 6.16 -51.93 -0.32 0.87 16 24 H 0.03 0.37 8.13 -51.93 -0.42 -0.05 16 25 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 26 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.07 1.09 6.40 -51.93 -0.33 0.76 16 28 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.38 2.36 9.12 45.56 0.42 2.78 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.96 7.99 -51.93 -0.41 0.55 16 33 H 0.06 1.16 7.95 -51.93 -0.41 0.75 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -31.66 271.73 -7.34 -39.00 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -4.73 Total: -1.73 kcal Atomic # 6 Polarization: 2.22 SS G_CDS: -0.22 Total: 2.00 kcal Atomic # 7 Polarization: -52.23 SS G_CDS: -0.98 Total: -53.22 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -0.48 Total: -7.09 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -31.66 -7.34 -39.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070069924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.150 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds