Wall clock time and date at job start Mon Mar 30 2020 02:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99957 * 2 1 4 4 H 1.48508 * 109.47149 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47196 * 299.99173 * 3 2 1 6 6 H 1.48497 * 109.47565 * 59.99552 * 3 2 1 7 7 C 1.38815 * 119.99986 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00142 * 196.89924 * 7 2 1 9 9 N 1.36935 * 119.99552 * 17.18837 * 7 2 1 10 10 C 1.47072 * 120.88769 * 26.56194 * 9 7 2 11 11 C 1.53689 * 108.28061 * 128.75549 * 10 9 7 12 12 N 1.46908 * 109.25591 * 54.08328 * 11 10 9 13 13 C 1.46899 * 110.99894 * 172.60742 * 12 11 10 14 14 C 1.53003 * 109.47336 * 294.30296 * 13 12 11 15 15 C 1.53002 * 109.47070 * 179.97438 * 14 13 12 16 16 O 1.42899 * 109.47159 * 179.97438 * 15 14 13 17 17 C 1.46895 * 111.26905 * 296.75534 * 12 11 10 18 18 C 1.47082 * 120.87800 * 206.84012 * 9 7 2 19 19 H 0.97002 * 120.00194 * 0.02562 * 1 2 3 20 20 H 1.09000 * 109.62781 * 248.52649 * 10 9 7 21 21 H 1.09007 * 109.62956 * 9.10346 * 10 9 7 22 22 H 1.09005 * 109.64961 * 294.08168 * 11 10 9 23 23 H 1.09006 * 109.42428 * 173.94823 * 11 10 9 24 24 H 1.09007 * 109.47250 * 54.30048 * 13 12 11 25 25 H 1.09001 * 109.47017 * 174.30504 * 13 12 11 26 26 H 1.08999 * 109.46978 * 299.99816 * 14 13 12 27 27 H 1.09001 * 109.46898 * 60.00135 * 14 13 12 28 28 H 1.08995 * 109.47519 * 300.00136 * 15 14 13 29 29 H 1.09005 * 109.46888 * 59.99846 * 15 14 13 30 30 H 0.96698 * 114.00326 * 180.02562 * 16 15 14 31 31 H 1.08994 * 109.49506 * 303.14713 * 17 12 11 32 32 H 1.08994 * 109.51398 * 183.07413 * 17 12 11 33 33 H 1.09003 * 109.62976 * 350.89624 * 18 9 7 34 34 H 1.08999 * 109.62701 * 111.47408 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2223 0.2724 9 7 1.3713 -2.3617 -0.3494 10 6 0.2077 -2.3408 -1.2486 11 6 0.4533 -3.3532 -2.3785 12 7 0.7628 -4.6653 -1.7945 13 6 0.8322 -5.7009 -2.8340 14 6 -0.5515 -5.8896 -3.4592 15 6 -0.4790 -6.9679 -4.5422 16 8 -1.7714 -7.1446 -5.1258 17 6 2.0052 -4.6206 -1.0121 18 6 1.8269 -3.6606 0.1689 19 1 -0.4850 0.8400 -0.0004 20 1 -0.6889 -2.6171 -0.6937 21 1 0.0880 -1.3424 -1.6695 22 1 1.2909 -3.0216 -2.9922 23 1 -0.4417 -3.4318 -2.9957 24 1 1.5404 -5.3957 -3.6044 25 1 1.1612 -6.6403 -2.3895 26 1 -1.2596 -6.1949 -2.6889 27 1 -0.8805 -4.9503 -3.9036 28 1 0.2291 -6.6623 -5.3125 29 1 -0.1497 -7.9074 -4.0982 30 1 -1.8004 -7.8152 -5.8218 31 1 2.8211 -4.2713 -1.6448 32 1 2.2362 -5.6181 -0.6384 33 1 2.7784 -3.5353 0.6858 34 1 1.0830 -4.0613 0.8574 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070069924.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:03 Heat of formation + Delta-G solvation = -49.595450 kcal Electronic energy + Delta-G solvation = -14792.825530 eV Core-core repulsion = 12339.217412 eV Total energy + Delta-G solvation = -2453.608119 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.82796 -37.95847 -36.35911 -33.84177 -32.07678 -31.62690 -28.45642 -25.82812 -24.45548 -23.96083 -21.90095 -20.84661 -18.76986 -18.21470 -17.07157 -16.64088 -16.30255 -15.70982 -15.37243 -15.22760 -15.07877 -14.74792 -14.24065 -13.75376 -13.28570 -12.98098 -12.79618 -12.64538 -12.34859 -12.15451 -12.06071 -11.94719 -11.81547 -11.50180 -11.35612 -10.82400 -10.60821 -9.26986 -8.69747 -7.88835 -5.34220 1.45648 1.46778 1.58033 2.49939 2.87635 3.26320 3.53221 3.67444 3.99249 4.21496 4.29752 4.35209 4.39260 4.49500 4.58882 4.64374 4.66146 4.70850 4.76388 4.88998 5.01900 5.16401 5.21363 5.30887 5.36116 5.60083 5.65533 6.17962 6.29275 6.36479 6.95365 7.11530 7.82286 8.37215 9.18350 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.053493 B = 0.006534 C = 0.006125 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.308958 B = 4284.435683 C = 4570.138519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.053 4.053 3 Si 0.970 3.030 4 H -0.265 1.265 5 H -0.289 1.289 6 H -0.291 1.291 7 C -0.265 4.265 8 H 0.069 0.931 9 N -0.615 5.615 10 C 0.185 3.815 11 C 0.050 3.950 12 N -0.547 5.547 13 C 0.063 3.937 14 C -0.117 4.117 15 C 0.083 3.917 16 O -0.598 6.598 17 C 0.056 3.944 18 C 0.142 3.858 19 H 0.251 0.749 20 H -0.004 1.004 21 H 0.056 0.944 22 H 0.019 0.981 23 H 0.077 0.923 24 H 0.035 0.965 25 H 0.093 0.907 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.398 0.602 31 H 0.025 0.975 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.457 -13.662 -8.813 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.248 4.248 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.216 1.216 6 H -0.218 1.218 7 C -0.395 4.395 8 H 0.087 0.913 9 N -0.339 5.339 10 C 0.059 3.941 11 C -0.079 4.079 12 N -0.272 5.272 13 C -0.064 4.064 14 C -0.155 4.155 15 C 0.005 3.995 16 O -0.407 6.407 17 C -0.074 4.074 18 C 0.016 3.984 19 H 0.060 0.940 20 H 0.015 0.985 21 H 0.074 0.926 22 H 0.037 0.963 23 H 0.095 0.905 24 H 0.053 0.947 25 H 0.111 0.889 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.248 0.752 31 H 0.043 0.957 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 1.859 -13.197 -8.050 15.569 hybrid contribution 0.815 0.995 -0.670 1.450 sum 2.674 -12.202 -8.720 15.234 Atomic orbital electron populations 1.70205 1.06804 1.25876 1.55535 1.25836 0.96073 1.01642 1.01231 0.85165 0.78581 0.79593 0.76847 1.18971 1.21587 1.21789 1.19600 0.92966 0.86009 1.40944 0.91306 1.44444 1.34464 1.02323 1.52716 1.20705 0.87853 0.96315 0.89228 1.22675 0.99229 0.89484 0.96520 1.61855 1.34952 1.05442 1.24932 1.21997 0.95963 0.95601 0.92875 1.21469 0.97351 0.98886 0.97748 1.22085 0.84348 0.98139 0.94932 1.86445 1.31925 1.64437 1.57879 1.22472 0.89442 1.00105 0.95331 1.21166 0.97514 0.85555 0.94158 0.94033 0.98544 0.92567 0.96259 0.90506 0.94674 0.88872 0.91957 0.92936 0.92560 0.91691 0.75194 0.95695 0.88387 0.91895 0.96710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.27 11.16 21.65 0.24 -57.03 16 2 C -0.05 -3.02 4.93 84.86 0.42 -2.61 16 3 Si 0.97 45.68 29.59 68.60 2.03 47.70 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 6 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 7 C -0.27 -15.07 9.63 84.03 0.81 -14.26 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 9 N -0.62 -32.57 3.03 -697.26 -2.11 -34.68 16 10 C 0.19 9.55 5.45 86.50 0.47 10.02 16 11 C 0.05 2.04 5.48 86.53 0.47 2.52 16 12 N -0.55 -19.34 4.63 -894.30 -4.14 -23.48 16 13 C 0.06 1.66 4.96 86.30 0.43 2.08 16 14 C -0.12 -3.00 5.52 30.60 0.17 -2.83 16 15 C 0.08 1.57 7.05 71.98 0.51 2.08 16 16 O -0.60 -12.35 13.66 -148.98 -2.03 -14.38 16 17 C 0.06 1.93 5.62 86.38 0.49 2.41 16 18 C 0.14 6.14 6.69 86.35 0.58 6.72 16 19 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 20 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 21 H 0.06 3.22 6.12 -2.38 -0.01 3.21 16 22 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 23 H 0.08 2.89 6.16 -2.38 -0.01 2.88 16 24 H 0.04 0.89 8.13 -2.38 -0.02 0.87 16 25 H 0.09 2.01 7.97 -2.39 -0.02 1.99 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.05 1.54 6.40 -2.39 -0.02 1.52 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.40 3.93 9.12 -74.06 -0.68 3.25 16 31 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.10 2.70 7.99 -2.39 -0.02 2.69 16 33 H 0.06 2.58 7.95 -2.39 -0.02 2.56 16 34 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -68.96 271.73 -1.28 -70.24 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 0.39 Total: 5.49 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: 4.34 Total: 6.13 kcal Atomic # 7 Polarization: -109.18 SS G_CDS: -6.01 Total: -115.19 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -2.03 Total: -14.38 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -68.96 -1.28 -70.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070069924.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.646 kcal (2) G-P(sol) polarization free energy of solvation -68.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds