Wall clock time and date at job start Mon Mar 30 2020 03:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81400 * 103.00190 * 2 1 4 4 C 1.50694 * 109.47328 * 179.97438 * 3 2 1 5 5 N 1.29523 * 124.55756 * 89.98059 * 4 3 2 6 6 C 1.30674 * 117.62969 * 180.02562 * 5 4 3 7 7 C 1.38583 * 113.55349 * 359.97438 * 6 5 4 8 8 C 1.40044 * 126.25645 * 179.97438 * 7 6 5 9 9 H 1.08002 * 120.00005 * 359.97438 * 8 7 6 10 10 C 1.40067 * 120.00028 * 179.97438 * 8 7 6 11 11 N 1.30862 * 120.00168 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 120.00243 * 179.97438 * 10 8 7 13 13 H 1.48491 * 109.47025 * 89.99859 * 12 10 8 14 14 H 1.48496 * 109.47160 * 210.00547 * 12 10 8 15 15 H 1.48505 * 109.46587 * 329.99824 * 12 10 8 16 16 S 1.70876 * 124.56581 * 270.00289 * 4 3 2 17 17 H 1.09001 * 109.47088 * 179.97438 * 1 2 3 18 18 H 1.08994 * 109.46757 * 299.99868 * 1 2 3 19 19 H 1.09004 * 109.46700 * 59.99604 * 1 2 3 20 20 H 1.09004 * 109.46540 * 59.99905 * 3 2 1 21 21 H 1.09001 * 109.47265 * 300.00650 * 3 2 1 22 22 H 1.08006 * 123.22690 * 179.73140 * 6 5 4 23 23 H 0.96998 * 120.00573 * 180.02562 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7195 1.9373 0.0006 5 7 4.4500 2.0197 -1.0657 6 6 5.7389 2.1654 -0.9076 7 6 6.1323 2.2108 0.4205 8 6 7.4428 2.3587 0.8915 9 1 8.2609 2.4498 0.1923 10 6 7.6925 2.3885 2.2694 11 7 6.7014 2.2776 3.1166 12 14 9.4407 2.5850 2.8978 13 1 9.7481 4.0284 3.0625 14 1 9.5764 1.8974 4.2070 15 1 10.3873 1.9852 1.9233 16 16 4.6822 2.0467 1.4082 17 1 -0.3633 -1.0277 -0.0005 18 1 -0.3632 0.5138 0.8900 19 1 -0.3633 0.5139 -0.8900 20 1 1.8032 2.2370 0.8900 21 1 1.8031 2.2372 -0.8899 22 1 6.4318 2.2393 -1.7328 23 1 6.8742 2.2986 4.0709 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082416406.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:40:16 Heat of formation + Delta-G solvation = -8.903519 kcal Electronic energy + Delta-G solvation = -9927.723741 eV Core-core repulsion = 7992.001048 eV Total energy + Delta-G solvation = -1935.722693 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 215.013 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.37806 -36.19928 -32.61895 -30.47143 -29.59119 -26.23575 -24.01894 -20.72711 -19.52455 -17.64152 -17.28593 -16.79493 -15.46390 -15.21140 -15.03627 -14.40942 -14.24915 -13.98365 -13.68815 -13.43626 -13.16872 -12.90485 -12.65774 -12.00911 -11.53153 -11.36351 -10.93241 -9.87061 -9.75768 -9.17540 -8.91251 -8.62152 -6.59908 0.32486 0.98643 1.38049 1.45192 1.54893 1.57839 1.83110 1.93148 2.16070 2.44230 3.07914 3.86774 4.24605 4.38433 4.40808 4.54110 4.87327 4.88475 4.97880 5.16711 5.71247 5.95388 6.30720 6.38803 7.72667 7.94024 Molecular weight = 215.01amu Principal moments of inertia in cm(-1) A = 0.067652 B = 0.007984 C = 0.007450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.783608 B = 3506.109668 C = 3757.598111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.335 6.335 3 C 0.054 3.946 4 C -0.193 4.193 5 N -0.438 5.438 6 C -0.200 4.200 7 C -0.032 4.032 8 C -0.380 4.380 9 H 0.111 0.889 10 C 0.009 3.991 11 N -0.789 5.789 12 Si 1.018 2.982 13 H -0.255 1.255 14 H -0.260 1.260 15 H -0.252 1.252 16 S 0.130 5.870 17 H 0.113 0.887 18 H 0.087 0.913 19 H 0.084 0.916 20 H 0.092 0.908 21 H 0.084 0.916 22 H 0.144 0.856 23 H 0.313 0.687 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 -0.268 2.933 4.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.274 4.274 2 S -0.110 6.110 3 C -0.096 4.096 4 C -0.461 4.461 5 N -0.152 5.152 6 C -0.356 4.356 7 C -0.156 4.156 8 C -0.418 4.418 9 H 0.129 0.871 10 C -0.211 4.211 11 N -0.415 5.415 12 Si 0.836 3.164 13 H -0.179 1.179 14 H -0.184 1.184 15 H -0.175 1.175 16 S 0.381 5.619 17 H 0.132 0.868 18 H 0.106 0.894 19 H 0.103 0.897 20 H 0.110 0.890 21 H 0.103 0.897 22 H 0.162 0.838 23 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.515 -1.236 3.663 5.225 hybrid contribution 0.393 1.108 -0.755 1.397 sum -3.122 -0.128 2.908 4.268 Atomic orbital electron populations 1.23392 0.90903 1.07402 1.05719 1.87426 1.10695 1.14732 1.98118 1.21168 0.91401 0.92646 1.04386 1.25499 0.99076 1.26820 0.94740 1.65132 1.06214 1.09794 1.34048 1.21595 0.90885 1.28420 0.94674 1.23754 0.98450 0.98221 0.95180 1.19707 0.92232 1.36003 0.93813 0.87098 1.27368 1.05886 0.91797 0.96073 1.68995 1.35830 1.30309 1.06321 0.84607 0.73390 0.79987 0.78427 1.17948 1.18427 1.17525 1.83769 0.96943 1.73158 1.08080 0.86798 0.89374 0.89688 0.88985 0.89745 0.83831 0.87399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.56 10.76 113.37 1.22 -1.34 14 2 S -0.33 -12.80 22.36 -56.49 -1.26 -14.06 14 3 C 0.05 2.21 6.51 71.23 0.46 2.67 14 4 C -0.19 -9.79 6.62 88.45 0.59 -9.20 14 5 N -0.44 -24.08 10.48 -188.23 -1.97 -26.05 14 6 C -0.20 -10.99 11.46 84.95 0.97 -10.02 14 7 C -0.03 -1.74 6.25 22.79 0.14 -1.59 14 8 C -0.38 -18.93 9.33 23.15 0.22 -18.72 14 9 H 0.11 5.10 7.85 -2.91 -0.02 5.08 14 10 C 0.01 0.41 5.50 85.28 0.47 0.88 14 11 N -0.79 -36.67 10.76 21.86 0.24 -36.44 14 12 Si 1.02 32.90 29.56 68.60 2.03 34.93 14 13 H -0.26 -7.91 7.11 99.48 0.71 -7.20 14 14 H -0.26 -7.92 7.11 99.48 0.71 -7.22 14 15 H -0.25 -7.93 7.11 99.48 0.71 -7.22 14 16 S 0.13 6.70 20.23 -56.49 -1.14 5.56 14 17 H 0.11 2.32 8.14 -2.39 -0.02 2.30 14 18 H 0.09 1.86 8.14 -2.39 -0.02 1.84 14 19 H 0.08 1.84 8.14 -2.39 -0.02 1.83 14 20 H 0.09 3.36 8.14 -2.39 -0.02 3.34 14 21 H 0.08 3.27 8.14 -2.39 -0.02 3.25 14 22 H 0.14 7.40 8.06 -2.91 -0.02 7.37 14 23 H 0.31 12.73 8.30 -92.71 -0.77 11.96 14 Total: -1.00 -61.22 236.05 3.16 -58.06 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 1.21 Total: 15.33 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 4.07 Total: -37.32 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: -1.74 Total: -62.49 kcal Atomic # 14 Polarization: 32.90 SS G_CDS: 2.03 Total: 34.93 kcal Atomic # 16 Polarization: -6.10 SS G_CDS: -2.41 Total: -8.50 kcal Total: -61.22 3.16 -58.06 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082416406.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.154 kcal (2) G-P(sol) polarization free energy of solvation -61.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds