Wall clock time and date at job start Mon Mar 30 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36940 * 120.00086 * 2 1 4 4 H 1.07999 * 120.00016 * 156.62520 * 3 2 1 5 5 C 1.38813 * 119.99915 * 336.63084 * 3 2 1 6 6 N 1.31615 * 119.99835 * 330.97034 * 5 3 2 7 7 Si 1.86806 * 119.99671 * 150.97706 * 5 3 2 8 8 H 1.48497 * 109.47034 * 269.99233 * 7 5 3 9 9 H 1.48500 * 109.46887 * 149.99863 * 7 5 3 10 10 H 1.48492 * 109.47372 * 29.99688 * 7 5 3 11 11 C 1.46501 * 119.99832 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.46975 * 269.99734 * 11 2 1 13 13 H 1.09000 * 109.50544 * 304.91674 * 12 11 2 14 14 C 1.53096 * 109.50443 * 184.78487 * 12 11 2 15 15 N 1.47008 * 109.25581 * 183.22062 * 14 12 11 16 16 C 1.46899 * 111.00024 * 182.39428 * 15 14 12 17 17 C 1.47008 * 110.75745 * 58.61340 * 15 14 12 18 18 C 1.53099 * 109.25738 * 301.38520 * 17 15 14 19 19 O 1.43012 * 109.50322 * 64.99939 * 12 11 2 20 20 H 1.09000 * 109.47530 * 92.72177 * 1 2 3 21 21 H 1.08995 * 109.46977 * 212.72949 * 1 2 3 22 22 H 1.09007 * 109.46962 * 332.72449 * 1 2 3 23 23 H 0.96996 * 120.00156 * 354.24649 * 6 5 3 24 24 H 1.08996 * 109.46895 * 30.00365 * 11 2 1 25 25 H 1.09000 * 109.46763 * 149.99700 * 11 2 1 26 26 H 1.09004 * 109.50747 * 303.15341 * 14 12 11 27 27 H 1.09000 * 109.50878 * 63.27939 * 14 12 11 28 28 H 1.09005 * 109.47026 * 292.41123 * 16 15 14 29 29 H 1.09000 * 109.47441 * 52.40209 * 16 15 14 30 30 H 1.08999 * 109.47601 * 172.41087 * 16 15 14 31 31 H 1.08994 * 109.50753 * 181.45043 * 17 15 14 32 32 H 1.09002 * 109.50351 * 61.31760 * 17 15 14 33 33 H 1.08999 * 109.50564 * 296.91049 * 18 17 15 34 34 H 1.09000 * 109.53974 * 176.80452 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1632 1.2243 0.3711 5 6 1.5411 2.3388 -0.4768 6 7 0.6148 2.2568 -1.4083 7 14 2.0368 4.0064 0.2034 8 1 1.1834 4.3376 1.3727 9 1 1.8609 5.0415 -0.8467 10 1 3.4601 3.9659 0.6250 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7110 1.4418 13 1 2.9656 -0.9149 1.9813 14 6 3.3198 -2.9726 1.4438 15 7 3.4972 -3.4368 2.8274 16 6 4.3723 -4.6155 2.8791 17 6 2.1971 -3.7179 3.4534 18 6 1.3411 -2.4488 3.4312 19 8 1.2054 -1.9948 2.0818 20 1 -0.3634 -0.0488 -1.0265 21 1 -0.3633 -0.8645 0.5556 22 1 -0.3633 0.9135 0.4710 23 1 0.4163 1.4018 -1.8210 24 1 1.6084 -2.0281 -0.5148 25 1 3.1498 -1.1382 -0.5144 26 1 2.8309 -3.7514 0.8585 27 1 4.2930 -2.7460 1.0082 28 1 3.8704 -5.4615 2.4094 29 1 5.3000 -4.4030 2.3479 30 1 4.5957 -4.8570 3.9183 31 1 2.3508 -4.0352 4.4847 32 1 1.6902 -4.5085 2.9002 33 1 1.8222 -1.6747 4.0290 34 1 0.3556 -2.6665 3.8428 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082462849.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:24 Heat of formation + Delta-G solvation = -15.895729 kcal Electronic energy + Delta-G solvation = -15171.449281 eV Core-core repulsion = 12719.302492 eV Total energy + Delta-G solvation = -2452.146789 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.31108 -35.94539 -35.09733 -32.15718 -30.18321 -28.70234 -26.37136 -25.39444 -23.93305 -22.55977 -20.46144 -20.05366 -17.27031 -16.02360 -15.82603 -15.20948 -14.78969 -14.65030 -13.84005 -13.68598 -13.48617 -13.28415 -12.69041 -12.32770 -11.93749 -11.87318 -11.34807 -10.85571 -10.82061 -10.79600 -10.57079 -10.49534 -10.00992 -9.96786 -9.39916 -9.16138 -8.34748 -8.23799 -6.82546 -5.97767 -3.10323 3.56727 3.59173 3.75380 3.88375 4.25193 4.67813 4.97828 5.08506 5.13007 5.33017 5.39810 5.41980 5.54137 5.58081 5.69567 5.74187 5.81402 5.84323 6.01944 6.16256 6.20817 6.53734 6.74045 6.82406 6.98006 6.99723 7.12134 7.28171 7.74360 8.07107 8.66748 9.21993 9.95762 10.36773 11.29104 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.046146 B = 0.007669 C = 0.007474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.619310 B = 3649.968946 C = 3745.543252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.139 3.861 2 N -0.597 5.597 3 C -0.358 4.358 4 H 0.057 0.943 5 C -0.021 4.021 6 N -0.913 5.913 7 Si 1.062 2.938 8 H -0.294 1.294 9 H -0.291 1.291 10 H -0.293 1.293 11 C 0.162 3.838 12 C 0.074 3.926 13 H 0.065 0.935 14 C 0.025 3.975 15 N -0.543 5.543 16 C 0.026 3.974 17 C 0.020 3.980 18 C 0.061 3.939 19 O -0.367 6.367 20 H 0.005 0.995 21 H 0.026 0.974 22 H 0.047 0.953 23 H 0.270 0.730 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.038 0.962 27 H 0.082 0.918 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.038 0.962 33 H 0.054 0.946 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.180 -12.236 8.157 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.319 5.319 3 C -0.487 4.487 4 H 0.074 0.926 5 C -0.224 4.224 6 N -0.553 5.553 7 Si 0.893 3.107 8 H -0.221 1.221 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.033 3.967 12 C 0.013 3.987 13 H 0.083 0.917 14 C -0.104 4.104 15 N -0.268 5.268 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.016 4.016 19 O -0.286 6.286 20 H 0.023 0.977 21 H 0.044 0.956 22 H 0.065 0.935 23 H 0.081 0.919 24 H 0.057 0.943 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 3.881 -10.176 8.249 13.663 hybrid contribution 0.345 -2.458 -0.099 2.484 sum 4.226 -12.634 8.150 15.618 Atomic orbital electron populations 1.20937 0.83635 0.98985 0.97051 1.43803 1.01247 1.00929 1.85935 1.19964 1.00543 0.87218 1.40993 0.92553 1.25720 0.98911 1.01860 0.95885 1.70733 1.35369 1.28448 1.20746 0.83566 0.75165 0.76031 0.75973 1.22128 1.21737 1.21904 1.20703 0.96746 0.88761 0.90492 1.23271 0.83789 0.93533 0.98095 0.91687 1.22860 1.01021 0.98263 0.88225 1.62201 1.13193 1.32981 1.18429 1.22368 0.97051 0.90982 1.01862 1.22796 0.89990 0.98356 0.99671 1.22547 0.99094 0.94122 0.85861 1.88078 1.29816 1.85978 1.24696 0.97721 0.95570 0.93469 0.91867 0.94253 0.91823 0.94416 0.89981 0.95834 0.91355 0.91532 0.90321 0.94381 0.92789 0.89200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.57 8.81 59.85 0.53 4.09 16 2 N -0.60 -15.70 2.77 -181.11 -0.50 -16.20 16 3 C -0.36 -10.32 9.47 -15.06 -0.14 -10.46 16 4 H 0.06 1.62 7.98 -52.49 -0.42 1.20 16 5 C -0.02 -0.62 4.63 -17.43 -0.08 -0.70 16 6 N -0.91 -28.21 12.71 55.49 0.71 -27.51 16 7 Si 1.06 26.08 30.01 -169.99 -5.10 20.98 16 8 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 9 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 10 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 11 C 0.16 3.50 5.37 -4.04 -0.02 3.48 16 12 C 0.07 1.43 3.05 -26.68 -0.08 1.35 16 13 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 14 C 0.02 0.39 4.94 -3.72 -0.02 0.37 16 15 N -0.54 -7.74 4.98 -242.60 -1.21 -8.95 16 16 C 0.03 0.28 9.63 60.06 0.58 0.86 16 17 C 0.02 0.27 5.66 -3.71 -0.02 0.25 16 18 C 0.06 0.94 7.01 37.21 0.26 1.20 16 19 O -0.37 -7.16 9.25 -35.23 -0.33 -7.49 16 20 H 0.00 0.12 6.83 -51.93 -0.35 -0.23 16 21 H 0.03 0.61 7.07 -51.93 -0.37 0.24 16 22 H 0.05 1.30 7.25 -51.92 -0.38 0.92 16 23 H 0.27 8.41 6.31 -40.82 -0.26 8.16 16 24 H 0.04 0.81 8.07 -51.93 -0.42 0.40 16 25 H 0.06 1.34 8.04 -51.93 -0.42 0.93 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 272.49 15.07 4.11 4.11 Total: -1.00 -31.98 272.49 -6.95 -38.93 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -5.63 Total: -4.31 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: 1.00 Total: 0.43 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: -1.00 Total: -52.66 kcal Atomic # 8 Polarization: -7.16 SS G_CDS: -0.33 Total: -7.49 kcal Atomic # 14 Polarization: 26.08 SS G_CDS: -5.10 Total: 20.98 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.98 -6.95 -38.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082462849.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.039 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds