Wall clock time and date at job start Mon Mar 30 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99648 * 2 1 4 4 H 1.07998 * 120.00055 * 203.17027 * 3 2 1 5 5 C 1.38811 * 119.99943 * 23.18066 * 3 2 1 6 6 N 1.31622 * 120.00329 * 13.64436 * 5 3 2 7 7 Si 1.86800 * 120.00235 * 193.64610 * 5 3 2 8 8 H 1.48504 * 109.47046 * 89.99372 * 7 5 3 9 9 H 1.48490 * 109.47454 * 210.00105 * 7 5 3 10 10 H 1.48507 * 109.47008 * 330.00033 * 7 5 3 11 11 C 1.46499 * 120.00226 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46719 * 90.00032 * 11 2 1 13 13 H 1.08994 * 109.50705 * 60.00354 * 12 11 2 14 14 C 1.53094 * 109.53812 * 180.10988 * 12 11 2 15 15 N 1.47016 * 109.25762 * 176.80859 * 14 12 11 16 16 C 1.46905 * 111.00247 * 177.60869 * 15 14 12 17 17 C 1.47014 * 110.74870 * 301.38150 * 15 14 12 18 18 C 1.53096 * 109.26001 * 58.61633 * 17 15 14 19 19 O 1.43010 * 109.50683 * 299.91394 * 12 11 2 20 20 H 1.08996 * 109.47277 * 275.14929 * 1 2 3 21 21 H 1.09001 * 109.47240 * 35.15446 * 1 2 3 22 22 H 1.09001 * 109.46632 * 155.15278 * 1 2 3 23 23 H 0.97000 * 120.00542 * 179.97438 * 6 5 3 24 24 H 1.08999 * 109.47100 * 330.00491 * 11 2 1 25 25 H 1.08997 * 109.47332 * 209.99677 * 11 2 1 26 26 H 1.09010 * 109.50814 * 296.73728 * 14 12 11 27 27 H 1.09001 * 109.51106 * 56.86599 * 14 12 11 28 28 H 1.08989 * 109.47108 * 187.58651 * 16 15 14 29 29 H 1.08999 * 109.46453 * 307.58397 * 16 15 14 30 30 H 1.08998 * 109.47114 * 67.58143 * 16 15 14 31 31 H 1.09004 * 109.50840 * 298.68187 * 17 15 14 32 32 H 1.08997 * 109.50804 * 178.55426 * 17 15 14 33 33 H 1.09005 * 109.50819 * 183.21679 * 18 17 15 34 34 H 1.08994 * 109.53936 * 63.10568 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1643 1.2238 -0.3680 5 6 1.5396 2.3395 0.4732 6 7 0.4214 2.2573 1.1628 7 14 2.3053 4.0087 0.1314 8 1 1.7700 4.5469 -1.1450 9 1 1.9751 4.9410 1.2390 10 1 3.7798 3.8651 0.0283 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7096 -1.4434 13 1 3.0416 -0.9502 -1.9574 14 6 3.2157 -3.0368 -1.4459 15 7 3.3903 -3.4931 -2.8325 16 6 4.1690 -4.7378 -2.8830 17 6 2.0880 -3.6593 -3.4940 18 6 1.3361 -2.3259 -3.4710 19 8 1.2033 -1.8825 -2.1177 20 1 -0.3633 0.0922 1.0235 21 1 -0.3634 0.8402 -0.5917 22 1 -0.3632 -0.9326 -0.4318 23 1 -0.0047 3.0634 1.4938 24 1 1.6085 -2.0286 0.5128 25 1 3.1500 -1.1386 0.5132 26 1 4.1927 -2.8958 -0.9834 27 1 2.6513 -3.7823 -0.8856 28 1 4.3985 -4.9809 -3.9204 29 1 5.0972 -4.6084 -2.3263 30 1 3.5893 -5.5474 -2.4398 31 1 1.5055 -4.4147 -2.9666 32 1 2.2416 -3.9727 -4.5266 33 1 0.3469 -2.4581 -3.9094 34 1 1.8920 -1.5839 -4.0441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082462851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:27 Heat of formation + Delta-G solvation = -12.350929 kcal Electronic energy + Delta-G solvation = -15152.405296 eV Core-core repulsion = 12700.412221 eV Total energy + Delta-G solvation = -2451.993075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.24148 -35.75696 -34.90884 -32.02388 -30.24809 -28.65455 -26.15189 -25.56005 -23.87812 -22.60697 -20.42953 -19.99423 -16.71557 -15.96344 -15.59991 -15.19171 -14.73280 -14.71668 -14.27088 -13.49941 -13.32140 -12.82483 -12.60506 -12.27684 -11.84091 -11.64806 -11.24028 -11.15927 -10.79101 -10.66883 -10.51892 -10.38264 -9.87313 -9.83049 -9.76094 -9.09118 -8.43774 -8.29750 -6.60767 -5.61373 -3.08061 3.44516 3.50490 3.51738 3.93123 4.32916 4.58640 5.03060 5.13815 5.19767 5.37712 5.45512 5.51097 5.57350 5.63464 5.76899 5.80132 5.87491 5.94470 6.08059 6.24644 6.30766 6.62583 6.84470 7.02463 7.04628 7.09812 7.58531 7.82336 7.87492 7.93007 8.50850 9.35134 9.98903 10.49523 11.42603 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047700 B = 0.007619 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.863295 B = 3674.212364 C = 3804.377442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.169 3.831 2 N -0.593 5.593 3 C -0.254 4.254 4 H 0.066 0.934 5 C 0.002 3.998 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.280 1.280 11 C 0.161 3.839 12 C 0.072 3.928 13 H 0.062 0.938 14 C 0.024 3.976 15 N -0.544 5.544 16 C 0.026 3.974 17 C 0.020 3.980 18 C 0.061 3.939 19 O -0.363 6.363 20 H 0.025 0.975 21 H 0.035 0.965 22 H 0.008 0.992 23 H 0.251 0.749 24 H 0.041 0.959 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.154 -12.069 -7.421 14.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.314 5.314 3 C -0.384 4.384 4 H 0.084 0.916 5 C -0.197 4.197 6 N -0.551 5.551 7 Si 0.733 3.267 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.032 3.968 12 C 0.011 3.989 13 H 0.080 0.920 14 C -0.104 4.104 15 N -0.268 5.268 16 C -0.123 4.123 17 C -0.108 4.108 18 C -0.017 4.017 19 O -0.281 6.281 20 H 0.043 0.957 21 H 0.054 0.946 22 H 0.026 0.974 23 H 0.061 0.939 24 H 0.059 0.941 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.042 0.958 31 H 0.056 0.944 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.112 -11.514 -7.479 14.333 hybrid contribution 0.224 0.180 -0.022 0.289 sum 4.336 -11.334 -7.501 14.267 Atomic orbital electron populations 1.20727 0.82265 0.95943 0.98660 1.43744 1.02086 1.00130 1.85477 1.19199 0.98307 0.85854 1.35046 0.91624 1.24999 0.98006 0.98408 0.98250 1.70092 1.20032 1.27027 1.37997 0.86277 0.78688 0.84338 0.77371 1.21583 1.21821 1.20526 1.20725 0.96766 0.89108 0.90216 1.23315 0.84459 0.93228 0.97906 0.91989 1.22877 1.01064 0.98301 0.88186 1.62217 1.17047 1.30427 1.17154 1.22364 0.97901 0.90131 1.01871 1.22801 0.89936 0.98725 0.99363 1.22543 0.99668 0.93497 0.85953 1.88117 1.29514 1.87063 1.23373 0.95660 0.94635 0.97375 0.93876 0.94080 0.91957 0.90025 0.94357 0.91602 0.91391 0.95839 0.94366 0.90422 0.89244 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.46 8.66 59.85 0.52 4.98 16 2 N -0.59 -15.69 2.84 -181.12 -0.52 -16.20 16 3 C -0.25 -7.24 9.65 -15.06 -0.15 -7.39 16 4 H 0.07 1.82 7.87 -52.49 -0.41 1.41 16 5 C 0.00 0.05 5.09 -17.43 -0.09 -0.04 16 6 N -0.91 -27.39 10.76 55.49 0.60 -26.79 16 7 Si 0.90 22.48 29.58 -169.99 -5.03 17.45 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 C 0.16 3.46 5.37 -4.04 -0.02 3.43 16 12 C 0.07 1.38 3.07 -26.68 -0.08 1.30 16 13 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 14 C 0.02 0.38 4.94 -3.71 -0.02 0.36 16 15 N -0.54 -7.72 4.99 -242.59 -1.21 -8.93 16 16 C 0.03 0.28 9.63 60.07 0.58 0.86 16 17 C 0.02 0.27 5.66 -3.71 -0.02 0.25 16 18 C 0.06 0.94 7.01 37.21 0.26 1.20 16 19 O -0.36 -7.15 9.20 -35.23 -0.32 -7.48 16 20 H 0.03 0.71 7.33 -51.93 -0.38 0.33 16 21 H 0.03 1.00 7.37 -51.93 -0.38 0.62 16 22 H 0.01 0.19 7.19 -51.93 -0.37 -0.19 16 23 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.04 0.85 8.07 -51.93 -0.42 0.43 16 25 H 0.06 1.28 8.04 -51.93 -0.42 0.86 16 26 H 0.08 1.16 8.11 -51.92 -0.42 0.74 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.63 8.14 -51.94 -0.42 0.21 16 29 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 273.27 15.07 4.12 4.12 Total: -1.00 -31.54 273.27 -7.12 -38.67 By element: Atomic # 1 Polarization: -0.05 SS G_CDS: -5.74 Total: -5.79 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 0.98 Total: 4.95 kcal Atomic # 7 Polarization: -50.79 SS G_CDS: -1.13 Total: -51.92 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -0.32 Total: -7.48 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.54 -7.12 -38.67 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082462851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.317 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds