Wall clock time and date at job start Mon Mar 30 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36939 * 119.99648 * 2 1 4 4 H 1.07998 * 120.00055 * 203.17027 * 3 2 1 5 5 C 1.38811 * 119.99943 * 23.18066 * 3 2 1 6 6 N 1.31622 * 120.00329 * 13.64436 * 5 3 2 7 7 Si 1.86800 * 120.00235 * 193.64610 * 5 3 2 8 8 H 1.48504 * 109.47046 * 89.99372 * 7 5 3 9 9 H 1.48490 * 109.47454 * 210.00105 * 7 5 3 10 10 H 1.48507 * 109.47008 * 330.00033 * 7 5 3 11 11 C 1.46499 * 120.00226 * 180.02562 * 2 1 3 12 12 C 1.53008 * 109.46719 * 90.00032 * 11 2 1 13 13 H 1.08994 * 109.50705 * 60.00354 * 12 11 2 14 14 C 1.53094 * 109.53812 * 180.10988 * 12 11 2 15 15 N 1.47016 * 109.25762 * 176.80859 * 14 12 11 16 16 C 1.46905 * 111.00247 * 177.60869 * 15 14 12 17 17 C 1.47014 * 110.74870 * 301.38150 * 15 14 12 18 18 C 1.53096 * 109.26001 * 58.61633 * 17 15 14 19 19 O 1.43010 * 109.50683 * 299.91394 * 12 11 2 20 20 H 1.08996 * 109.47277 * 275.14929 * 1 2 3 21 21 H 1.09001 * 109.47240 * 35.15446 * 1 2 3 22 22 H 1.09001 * 109.46632 * 155.15278 * 1 2 3 23 23 H 0.97000 * 120.00542 * 179.97438 * 6 5 3 24 24 H 1.08999 * 109.47100 * 330.00491 * 11 2 1 25 25 H 1.08997 * 109.47332 * 209.99677 * 11 2 1 26 26 H 1.09010 * 109.50814 * 296.73728 * 14 12 11 27 27 H 1.09001 * 109.51106 * 56.86599 * 14 12 11 28 28 H 1.08989 * 109.47108 * 187.58651 * 16 15 14 29 29 H 1.08999 * 109.46453 * 307.58397 * 16 15 14 30 30 H 1.08998 * 109.47114 * 67.58143 * 16 15 14 31 31 H 1.09004 * 109.50840 * 298.68187 * 17 15 14 32 32 H 1.08997 * 109.50804 * 178.55426 * 17 15 14 33 33 H 1.09005 * 109.50819 * 183.21679 * 18 17 15 34 34 H 1.08994 * 109.53936 * 63.10568 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1643 1.2238 -0.3680 5 6 1.5396 2.3395 0.4732 6 7 0.4214 2.2573 1.1628 7 14 2.3053 4.0087 0.1314 8 1 1.7700 4.5469 -1.1450 9 1 1.9751 4.9410 1.2390 10 1 3.7798 3.8651 0.0283 11 6 2.1976 -1.2687 -0.0006 12 6 2.4526 -1.7096 -1.4434 13 1 3.0416 -0.9502 -1.9574 14 6 3.2157 -3.0368 -1.4459 15 7 3.3903 -3.4931 -2.8325 16 6 4.1690 -4.7378 -2.8830 17 6 2.0880 -3.6593 -3.4940 18 6 1.3361 -2.3259 -3.4710 19 8 1.2033 -1.8825 -2.1177 20 1 -0.3633 0.0922 1.0235 21 1 -0.3634 0.8402 -0.5917 22 1 -0.3632 -0.9326 -0.4318 23 1 -0.0047 3.0634 1.4938 24 1 1.6085 -2.0286 0.5128 25 1 3.1500 -1.1386 0.5132 26 1 4.1927 -2.8958 -0.9834 27 1 2.6513 -3.7823 -0.8856 28 1 4.3985 -4.9809 -3.9204 29 1 5.0972 -4.6084 -2.3263 30 1 3.5893 -5.5474 -2.4398 31 1 1.5055 -4.4147 -2.9666 32 1 2.2416 -3.9727 -4.5266 33 1 0.3469 -2.4581 -3.9094 34 1 1.8920 -1.5839 -4.0441 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082462851.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:27 Heat of formation + Delta-G solvation = -34.876059 kcal Electronic energy + Delta-G solvation = -15153.382059 eV Core-core repulsion = 12700.412221 eV Total energy + Delta-G solvation = -2452.969838 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.54334 -37.47170 -36.38967 -33.82912 -31.99853 -29.84360 -27.95108 -27.47058 -25.00308 -24.24679 -22.20513 -21.29633 -18.75287 -17.28466 -17.06140 -16.89048 -16.12755 -15.87212 -15.76361 -15.28503 -14.87518 -14.55904 -14.20609 -13.31536 -13.29038 -13.07171 -12.90787 -12.75434 -12.53864 -12.30356 -12.23312 -12.06124 -11.96896 -11.79474 -11.38595 -10.64369 -10.43721 -9.36962 -8.73735 -7.79729 -5.29519 1.46377 1.48684 1.57221 2.51627 2.86280 2.99143 3.32855 3.67421 4.01326 4.09202 4.13035 4.23493 4.31769 4.55777 4.58932 4.65232 4.69294 4.72837 4.82208 4.88673 4.96598 4.99599 5.08785 5.20520 5.40701 5.63816 5.71161 5.94121 6.03762 6.34497 6.44180 7.17099 7.89134 8.35609 9.23118 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.047700 B = 0.007619 C = 0.007358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.863295 B = 3674.212364 C = 3804.377442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.189 3.811 2 N -0.611 5.611 3 C -0.264 4.264 4 H 0.070 0.930 5 C -0.055 4.055 6 N -0.940 5.940 7 Si 0.970 3.030 8 H -0.289 1.289 9 H -0.293 1.293 10 H -0.266 1.266 11 C 0.157 3.843 12 C 0.083 3.917 13 H 0.037 0.963 14 C 0.035 3.965 15 N -0.559 5.559 16 C 0.026 3.974 17 C 0.026 3.974 18 C 0.054 3.946 19 O -0.393 6.393 20 H 0.001 0.999 21 H 0.006 0.994 22 H 0.028 0.972 23 H 0.248 0.752 24 H 0.049 0.951 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.030 0.970 31 H 0.041 0.959 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.404 -13.295 -8.518 16.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 N -0.334 5.334 3 C -0.394 4.394 4 H 0.088 0.912 5 C -0.250 4.250 6 N -0.587 5.587 7 Si 0.798 3.202 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.190 1.190 11 C 0.030 3.970 12 C 0.022 3.978 13 H 0.055 0.945 14 C -0.093 4.093 15 N -0.284 5.284 16 C -0.121 4.121 17 C -0.102 4.102 18 C -0.023 4.023 19 O -0.312 6.312 20 H 0.020 0.980 21 H 0.025 0.975 22 H 0.047 0.953 23 H 0.057 0.943 24 H 0.067 0.933 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.060 0.940 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.396 -12.786 -8.599 16.326 hybrid contribution -0.166 0.477 0.264 0.570 sum 5.230 -12.309 -8.335 15.758 Atomic orbital electron populations 1.20392 0.82844 0.95603 0.96726 1.43968 1.02124 1.01417 1.85843 1.19538 0.98570 0.86965 1.34298 0.91246 1.25815 0.98757 1.01963 0.98452 1.70253 1.21512 1.27605 1.39289 0.85229 0.78524 0.79715 0.76767 1.21585 1.21922 1.19026 1.20908 0.96596 0.87253 0.92204 1.22894 0.84546 0.94748 0.95573 0.94511 1.22662 1.01003 0.96118 0.89553 1.62209 1.17712 1.32489 1.16017 1.22433 0.97713 0.88722 1.03251 1.22773 0.89399 0.97153 1.00891 1.22782 1.01237 0.94501 0.83757 1.88045 1.29918 1.87675 1.25555 0.98046 0.97503 0.95326 0.94302 0.93267 0.91297 0.88827 0.93995 0.89937 0.90640 0.95148 0.94117 0.87743 0.87315 0.93793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.23 8.66 127.77 1.11 11.34 16 2 N -0.61 -32.63 2.84 -726.93 -2.07 -34.70 16 3 C -0.26 -15.11 9.65 84.03 0.81 -14.29 16 4 H 0.07 3.84 7.87 -2.91 -0.02 3.82 16 5 C -0.06 -3.21 5.09 84.86 0.43 -2.78 16 6 N -0.94 -57.96 10.76 21.65 0.23 -57.73 16 7 Si 0.97 46.53 29.58 68.60 2.03 48.56 16 8 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 9 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 C 0.16 6.70 5.37 86.38 0.46 7.16 16 12 C 0.08 3.12 3.07 30.63 0.09 3.21 16 13 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 14 C 0.04 1.02 4.94 86.31 0.43 1.45 16 15 N -0.56 -14.32 4.99 -921.43 -4.59 -18.91 16 16 C 0.03 0.49 9.63 127.69 1.23 1.72 16 17 C 0.03 0.61 5.66 86.31 0.49 1.10 16 18 C 0.05 1.58 7.01 72.01 0.50 2.09 16 19 O -0.39 -15.19 9.20 -148.98 -1.37 -16.56 16 20 H 0.00 0.08 7.33 -2.39 -0.02 0.06 16 21 H 0.01 0.36 7.37 -2.39 -0.02 0.35 16 22 H 0.03 1.38 7.19 -2.39 -0.02 1.37 16 23 H 0.25 14.77 8.31 -92.71 -0.77 14.00 16 24 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 25 H 0.07 2.79 8.04 -2.39 -0.02 2.77 16 26 H 0.09 2.44 8.11 -2.38 -0.02 2.42 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 30 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.11 2.69 8.14 -2.38 -0.02 2.67 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -67.49 273.27 0.83 -66.66 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: 1.04 Total: 1.67 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 5.56 Total: 11.00 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -6.43 Total: -111.34 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -1.37 Total: -16.56 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -67.49 0.83 -66.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082462851.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.787 kcal (2) G-P(sol) polarization free energy of solvation -67.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds