Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47016 * 111.00233 * 2 1 4 4 C 1.53092 * 109.25902 * 177.60563 * 3 2 1 5 5 O 1.43015 * 109.29686 * 56.82732 * 4 3 2 6 6 C 1.43020 * 113.73679 * 301.40161 * 5 4 3 7 7 H 1.09002 * 109.50423 * 298.64075 * 6 5 4 8 8 C 1.52997 * 109.50750 * 178.55414 * 6 5 4 9 9 N 1.46901 * 109.47125 * 65.08381 * 8 6 5 10 10 C 1.46898 * 110.99614 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46984 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99501 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00436 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00481 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99886 * 359.72901 * 13 11 10 16 16 H 1.48502 * 109.46964 * 270.27509 * 15 13 11 17 17 H 1.48505 * 109.47036 * 30.26897 * 15 13 11 18 18 H 1.48490 * 109.47395 * 150.27411 * 15 13 11 19 19 C 1.47016 * 111.00107 * 236.36443 * 2 1 3 20 20 H 1.08998 * 109.47392 * 183.62907 * 1 2 3 21 21 H 1.08995 * 109.47608 * 303.63777 * 1 2 3 22 22 H 1.09001 * 109.47004 * 63.63452 * 1 2 3 23 23 H 1.08994 * 109.51011 * 297.54407 * 3 2 1 24 24 H 1.09004 * 109.50328 * 57.62676 * 3 2 1 25 25 H 1.09004 * 109.50863 * 176.79037 * 4 3 2 26 26 H 1.09008 * 109.50838 * 296.91239 * 4 3 2 27 27 H 1.09002 * 109.46945 * 305.08639 * 8 6 5 28 28 H 1.09000 * 109.47247 * 185.09001 * 8 6 5 29 29 H 1.00890 * 111.00276 * 303.95677 * 9 8 6 30 30 H 1.09004 * 109.47320 * 60.00702 * 10 9 8 31 31 H 1.09001 * 109.47291 * 299.99999 * 10 9 8 32 32 H 0.96999 * 120.00235 * 179.72806 * 14 13 11 33 33 H 1.09005 * 109.50275 * 62.45962 * 19 2 1 34 34 H 1.08997 * 109.54220 * 302.35427 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0183 0.5571 -1.0396 6 6 3.5250 -0.7850 -1.0709 7 1 3.8385 -1.3091 -0.1680 8 6 4.0826 -1.5058 -2.2998 9 7 5.5406 -1.6329 -2.1733 10 6 6.1118 -2.3224 -3.3379 11 6 7.6056 -2.4345 -3.1725 12 1 8.0827 -2.0339 -2.2902 13 6 8.3631 -3.0483 -4.1473 14 7 9.6667 -3.1456 -4.0032 15 14 7.5370 -3.7478 -5.6697 16 1 7.1536 -5.1605 -5.4199 17 1 6.3221 -2.9532 -5.9829 18 1 8.4783 -3.6857 -6.8164 19 6 1.9959 -0.7602 -1.1427 20 1 -0.3634 -1.0256 0.0650 21 1 -0.3634 0.5692 0.8555 22 1 -0.3633 0.4564 -0.9208 23 1 1.6828 1.8826 -0.9109 24 1 1.6127 1.9094 0.8678 25 1 3.9222 2.3398 0.0031 26 1 3.8385 0.8643 0.9966 27 1 3.8442 -0.9332 -3.1961 28 1 3.6363 -2.4976 -2.3729 29 1 5.9719 -0.7308 -2.0393 30 1 5.8876 -1.7558 -4.2417 31 1 5.6796 -3.3199 -3.4177 32 1 10.1991 -3.5809 -4.6872 33 1 1.6827 -0.2842 -2.0720 34 1 1.6133 -1.7803 -1.1095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082470955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = -38.471011 kcal Electronic energy + Delta-G solvation = -14529.648393 eV Core-core repulsion = 12076.522666 eV Total energy + Delta-G solvation = -2453.125727 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64174 -36.01070 -35.12517 -32.62766 -31.25627 -29.03845 -27.56701 -24.90886 -24.13188 -21.75955 -20.99855 -20.32496 -16.82757 -16.43267 -16.20001 -15.45141 -15.16254 -14.93297 -14.38779 -13.87454 -13.78354 -13.39346 -12.81073 -12.49161 -12.38714 -12.07966 -11.73463 -11.65577 -11.35312 -11.05500 -10.72332 -10.52570 -10.27417 -9.79018 -9.52059 -9.23733 -8.58185 -8.54909 -7.41520 -6.01688 -3.99288 3.31599 3.38371 3.41176 3.63652 3.87527 4.45548 4.67192 4.83697 4.88017 5.10625 5.18829 5.26058 5.30975 5.31641 5.43131 5.49885 5.58037 5.60048 5.67692 5.77827 5.88882 6.13695 6.27738 6.74282 6.74637 6.81340 7.07413 7.32211 7.64563 7.93971 8.42833 8.70087 9.07172 9.60304 11.11726 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.061275 B = 0.005723 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.847936 B = 4891.317903 C = 5203.171851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.543 5.543 3 C 0.017 3.983 4 C 0.064 3.936 5 O -0.377 6.377 6 C 0.096 3.904 7 H 0.077 0.923 8 C 0.066 3.934 9 N -0.678 5.678 10 C 0.163 3.837 11 C -0.514 4.514 12 H 0.080 0.920 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.268 1.268 18 H -0.286 1.286 19 C 0.024 3.976 20 H 0.070 0.930 21 H 0.068 0.932 22 H 0.025 0.975 23 H 0.040 0.960 24 H 0.083 0.917 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.025 0.975 28 H 0.078 0.922 29 H 0.344 0.656 30 H -0.016 1.016 31 H 0.021 0.979 32 H 0.263 0.737 33 H 0.041 0.959 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.239 7.547 6.499 20.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.267 5.267 3 C -0.111 4.111 4 C -0.013 4.013 5 O -0.296 6.296 6 C 0.038 3.962 7 H 0.095 0.905 8 C -0.065 4.065 9 N -0.309 5.309 10 C 0.035 3.965 11 C -0.552 4.552 12 H 0.098 0.902 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.705 3.295 16 H -0.201 1.201 17 H -0.193 1.193 18 H -0.212 1.212 19 C -0.104 4.104 20 H 0.089 0.911 21 H 0.087 0.913 22 H 0.043 0.957 23 H 0.059 0.941 24 H 0.101 0.899 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.162 0.838 30 H 0.002 0.998 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.059 0.941 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.818 6.743 7.074 20.322 hybrid contribution -0.982 0.573 -2.080 2.371 sum -18.800 7.316 4.993 20.783 Atomic orbital electron populations 1.22374 0.87109 1.02390 1.00432 1.62192 1.07995 1.13666 1.42872 1.22831 0.97223 0.89731 1.01360 1.22596 0.91479 0.96542 0.90671 1.88022 1.69844 1.23829 1.47909 1.22290 0.90357 0.83210 1.00329 0.90517 1.21894 0.92077 0.98423 0.94070 1.60457 1.00730 1.26178 1.43533 1.20007 0.96173 0.93441 0.86839 1.21071 0.89422 1.37927 1.06822 0.90243 1.24904 0.94712 0.95723 0.98023 1.69901 1.04896 1.44252 1.34988 0.86816 0.79616 0.79905 0.83125 1.20145 1.19309 1.21231 1.22815 0.96692 0.99280 0.91655 0.91141 0.91329 0.95661 0.94141 0.89870 0.88592 0.92235 0.95639 0.90363 0.83796 0.99844 0.96075 0.92685 0.94051 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.06 0.58 0.80 16 2 N -0.54 -6.25 4.99 -242.60 -1.21 -7.46 16 3 C 0.02 0.18 5.66 -3.71 -0.02 0.16 16 4 C 0.06 0.77 7.01 37.20 0.26 1.03 16 5 O -0.38 -5.98 10.00 -35.23 -0.35 -6.33 16 6 C 0.10 1.47 3.04 -26.68 -0.08 1.39 16 7 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 8 C 0.07 1.16 5.39 -3.83 -0.02 1.14 16 9 N -0.68 -14.88 6.49 -115.05 -0.75 -15.62 16 10 C 0.16 4.12 4.51 -4.97 -0.02 4.10 16 11 C -0.51 -15.18 9.87 -34.44 -0.34 -15.52 16 12 H 0.08 2.54 8.06 -52.49 -0.42 2.12 16 13 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 14 N -0.90 -28.22 13.96 55.43 0.77 -27.45 16 15 Si 0.88 21.98 27.46 -169.99 -4.67 17.32 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.27 -6.50 6.55 56.52 0.37 -6.13 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 19 C 0.02 0.30 4.95 -3.71 -0.02 0.29 16 20 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 26 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 29 H 0.34 7.64 8.29 -39.30 -0.33 7.32 16 30 H -0.02 -0.41 7.21 -51.93 -0.37 -0.78 16 31 H 0.02 0.53 7.56 -51.93 -0.39 0.14 16 32 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 276.29 15.07 4.16 4.16 Total: -1.00 -31.97 276.29 -7.56 -39.53 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -5.75 Total: 0.55 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: 0.24 Total: -4.70 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -1.18 Total: -50.53 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -0.35 Total: -6.33 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.97 -7.56 -39.53 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082470955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.056 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds