Wall clock time and date at job start Mon Mar 30 2020 03:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.47016 * 111.00233 * 2 1 4 4 C 1.53092 * 109.25902 * 177.60563 * 3 2 1 5 5 O 1.43015 * 109.29686 * 56.82732 * 4 3 2 6 6 C 1.43020 * 113.73679 * 301.40161 * 5 4 3 7 7 H 1.09002 * 109.50423 * 298.64075 * 6 5 4 8 8 C 1.52997 * 109.50750 * 178.55414 * 6 5 4 9 9 N 1.46901 * 109.47125 * 65.08381 * 8 6 5 10 10 C 1.46898 * 110.99614 * 179.97438 * 9 8 6 11 11 C 1.50706 * 109.46984 * 180.02562 * 10 9 8 12 12 H 1.07998 * 119.99501 * 0.02562 * 11 10 9 13 13 C 1.37871 * 120.00436 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00481 * 179.97438 * 13 11 10 15 15 Si 1.86803 * 119.99886 * 359.72901 * 13 11 10 16 16 H 1.48502 * 109.46964 * 270.27509 * 15 13 11 17 17 H 1.48505 * 109.47036 * 30.26897 * 15 13 11 18 18 H 1.48490 * 109.47395 * 150.27411 * 15 13 11 19 19 C 1.47016 * 111.00107 * 236.36443 * 2 1 3 20 20 H 1.08998 * 109.47392 * 183.62907 * 1 2 3 21 21 H 1.08995 * 109.47608 * 303.63777 * 1 2 3 22 22 H 1.09001 * 109.47004 * 63.63452 * 1 2 3 23 23 H 1.08994 * 109.51011 * 297.54407 * 3 2 1 24 24 H 1.09004 * 109.50328 * 57.62676 * 3 2 1 25 25 H 1.09004 * 109.50863 * 176.79037 * 4 3 2 26 26 H 1.09008 * 109.50838 * 296.91239 * 4 3 2 27 27 H 1.09002 * 109.46945 * 305.08639 * 8 6 5 28 28 H 1.09000 * 109.47247 * 185.09001 * 8 6 5 29 29 H 1.00890 * 111.00276 * 303.95677 * 9 8 6 30 30 H 1.09004 * 109.47320 * 60.00702 * 10 9 8 31 31 H 1.09001 * 109.47291 * 299.99999 * 10 9 8 32 32 H 0.96999 * 120.00235 * 179.72806 * 14 13 11 33 33 H 1.09005 * 109.50275 * 62.45962 * 19 2 1 34 34 H 1.08997 * 109.54220 * 302.35427 * 19 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3725 0.0000 4 6 3.5249 1.3264 0.0604 5 8 4.0183 0.5571 -1.0396 6 6 3.5250 -0.7850 -1.0709 7 1 3.8385 -1.3091 -0.1680 8 6 4.0826 -1.5058 -2.2998 9 7 5.5406 -1.6329 -2.1733 10 6 6.1118 -2.3224 -3.3379 11 6 7.6056 -2.4345 -3.1725 12 1 8.0827 -2.0339 -2.2902 13 6 8.3631 -3.0483 -4.1473 14 7 9.6667 -3.1456 -4.0032 15 14 7.5370 -3.7478 -5.6697 16 1 7.1536 -5.1605 -5.4199 17 1 6.3221 -2.9532 -5.9829 18 1 8.4783 -3.6857 -6.8164 19 6 1.9959 -0.7602 -1.1427 20 1 -0.3634 -1.0256 0.0650 21 1 -0.3634 0.5692 0.8555 22 1 -0.3633 0.4564 -0.9208 23 1 1.6828 1.8826 -0.9109 24 1 1.6127 1.9094 0.8678 25 1 3.9222 2.3398 0.0031 26 1 3.8385 0.8643 0.9966 27 1 3.8442 -0.9332 -3.1961 28 1 3.6363 -2.4976 -2.3729 29 1 5.9719 -0.7308 -2.0393 30 1 5.8876 -1.7558 -4.2417 31 1 5.6796 -3.3199 -3.4177 32 1 10.1991 -3.5809 -4.6872 33 1 1.6827 -0.2842 -2.0720 34 1 1.6133 -1.7803 -1.1095 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082470955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:30 Heat of formation + Delta-G solvation = -64.635125 kcal Electronic energy + Delta-G solvation = -14530.782954 eV Core-core repulsion = 12076.522666 eV Total energy + Delta-G solvation = -2454.260288 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.67652 -37.34171 -36.46081 -34.66485 -32.69135 -30.09573 -29.19872 -26.29702 -25.05654 -23.27901 -22.71271 -21.36078 -18.99520 -17.60323 -17.25418 -16.76807 -16.44206 -15.95525 -15.84854 -15.48416 -15.11518 -14.75794 -14.43119 -13.99445 -13.53140 -13.25084 -12.98753 -12.91955 -12.67110 -12.51309 -12.23886 -11.99153 -11.85253 -11.60155 -11.34825 -10.80838 -10.60388 -9.43555 -9.17382 -8.30018 -6.35193 1.35400 1.37648 1.48766 2.34653 2.73641 2.84026 3.03700 3.43218 3.95183 3.98468 4.02817 4.12332 4.25013 4.37540 4.49790 4.58374 4.62069 4.65648 4.67485 4.76611 4.84874 4.95088 4.98372 5.04459 5.08217 5.50680 5.86632 5.93750 5.97111 6.24561 6.53830 6.63444 6.74520 7.29711 8.86977 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.061275 B = 0.005723 C = 0.005380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.847936 B = 4891.317903 C = 5203.171851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.021 3.979 4 C 0.057 3.943 5 O -0.405 6.405 6 C 0.102 3.898 7 H 0.063 0.937 8 C 0.066 3.934 9 N -0.688 5.688 10 C 0.174 3.826 11 C -0.531 4.531 12 H 0.034 0.966 13 C 0.007 3.993 14 N -0.948 5.948 15 Si 0.955 3.045 16 H -0.262 1.262 17 H -0.252 1.252 18 H -0.280 1.280 19 C 0.032 3.968 20 H 0.077 0.923 21 H 0.083 0.917 22 H 0.028 0.972 23 H 0.039 0.961 24 H 0.107 0.893 25 H 0.113 0.887 26 H 0.056 0.944 27 H 0.027 0.973 28 H 0.093 0.907 29 H 0.338 0.662 30 H -0.015 1.015 31 H 0.030 0.970 32 H 0.268 0.732 33 H 0.040 0.960 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.794 7.498 5.888 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.281 5.281 3 C -0.107 4.107 4 C -0.019 4.019 5 O -0.324 6.324 6 C 0.044 3.956 7 H 0.081 0.919 8 C -0.063 4.063 9 N -0.318 5.318 10 C 0.045 3.955 11 C -0.570 4.570 12 H 0.053 0.947 13 C -0.190 4.190 14 N -0.588 5.588 15 Si 0.778 3.222 16 H -0.187 1.187 17 H -0.176 1.176 18 H -0.205 1.205 19 C -0.096 4.096 20 H 0.096 0.904 21 H 0.102 0.898 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.125 0.875 25 H 0.131 0.869 26 H 0.074 0.926 27 H 0.045 0.955 28 H 0.111 0.889 29 H 0.156 0.844 30 H 0.003 0.997 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.058 0.942 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -20.404 6.707 6.489 22.437 hybrid contribution -0.142 0.663 -1.765 1.891 sum -20.546 7.370 4.724 22.333 Atomic orbital electron populations 1.22442 0.85278 1.03251 1.01265 1.62207 1.09663 1.13997 1.42198 1.22830 0.95921 0.89630 1.02364 1.22836 0.92890 0.96813 0.89407 1.87975 1.70845 1.24137 1.49474 1.22118 0.92236 0.82905 0.98341 0.91879 1.22002 0.89163 0.99749 0.95429 1.60376 1.03396 1.25858 1.42177 1.19776 0.93442 0.94209 0.88025 1.21339 0.92023 1.38001 1.05602 0.94727 1.25917 0.95276 0.95907 1.01915 1.70058 1.06822 1.45331 1.36621 0.85601 0.78930 0.79601 0.78078 1.18694 1.17552 1.20518 1.22674 0.94439 1.00354 0.92181 0.90448 0.89817 0.95352 0.94304 0.87475 0.86878 0.92558 0.95505 0.88927 0.84425 0.99695 0.95245 0.92272 0.94180 0.88251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.60 127.69 1.23 1.60 16 2 N -0.56 -11.48 4.99 -921.45 -4.59 -16.08 16 3 C 0.02 0.39 5.66 86.31 0.49 0.88 16 4 C 0.06 1.30 7.01 72.01 0.50 1.81 16 5 O -0.40 -12.61 10.00 -148.98 -1.49 -14.10 16 6 C 0.10 3.02 3.04 30.63 0.09 3.12 16 7 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 8 C 0.07 2.26 5.39 86.30 0.47 2.73 16 9 N -0.69 -30.23 6.49 -517.92 -3.36 -33.60 16 10 C 0.17 8.70 4.51 85.56 0.39 9.08 16 11 C -0.53 -32.10 9.87 25.60 0.25 -31.85 16 12 H 0.03 2.32 8.06 -2.91 -0.02 2.30 16 13 C 0.01 0.44 5.47 84.65 0.46 0.90 16 14 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 15 Si 0.96 44.82 27.46 68.60 1.88 46.70 16 16 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.25 -11.07 6.55 99.48 0.65 -10.41 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 C 0.03 0.75 4.95 86.31 0.43 1.17 16 20 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.03 0.41 8.14 -2.39 -0.02 0.39 16 23 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.11 1.51 8.14 -2.38 -0.02 1.49 16 25 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.03 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 29 H 0.34 15.39 8.29 -89.70 -0.74 14.64 16 30 H -0.01 -0.72 7.21 -2.39 -0.02 -0.74 16 31 H 0.03 1.43 7.56 -2.39 -0.02 1.41 16 32 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 33 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -69.29 276.29 -2.69 -71.99 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: 0.26 Total: 15.90 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 4.31 Total: -10.57 kcal Atomic # 7 Polarization: -102.27 SS G_CDS: -7.66 Total: -109.92 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: -1.49 Total: -14.10 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.88 Total: 46.70 kcal Total: -69.29 -2.69 -71.99 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082470955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.353 kcal (2) G-P(sol) polarization free energy of solvation -69.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds