Wall clock time and date at job start Mon Mar 30 2020 03:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00251 * 2 1 4 4 C 1.46907 * 111.00272 * 123.95774 * 2 1 3 5 5 C 1.52993 * 109.47368 * 76.07005 * 4 2 1 6 6 H 1.09000 * 110.00001 * 306.03433 * 5 4 2 7 7 C 1.54331 * 109.87838 * 67.12805 * 5 4 2 8 8 C 1.55158 * 102.93959 * 141.61281 * 7 5 4 9 9 H 1.09004 * 111.00929 * 82.57180 * 8 7 5 10 10 O 1.42896 * 111.00293 * 206.42740 * 8 7 5 11 11 C 1.55138 * 101.48615 * 324.33188 * 8 7 5 12 12 N 1.47018 * 109.88446 * 184.93729 * 5 4 2 13 13 C 1.36940 * 125.65061 * 61.60524 * 12 5 4 14 14 H 1.08005 * 119.99505 * 29.67877 * 13 12 5 15 15 C 1.38806 * 120.00197 * 209.67541 * 13 12 5 16 16 N 1.31614 * 119.99944 * 202.48559 * 15 13 12 17 17 Si 1.86806 * 120.00022 * 22.49197 * 15 13 12 18 18 H 1.48501 * 109.46690 * 274.91072 * 17 15 13 19 19 H 1.48501 * 109.46971 * 34.90620 * 17 15 13 20 20 H 1.48492 * 109.47319 * 154.90910 * 17 15 13 21 21 H 1.09007 * 109.46845 * 299.88656 * 1 2 3 22 22 H 1.09004 * 109.47252 * 59.88195 * 1 2 3 23 23 H 1.08996 * 109.47238 * 179.88990 * 1 2 3 24 24 H 1.09008 * 109.47139 * 183.95495 * 3 2 1 25 25 H 1.09000 * 109.47189 * 303.95160 * 3 2 1 26 26 H 1.09002 * 109.47241 * 63.95952 * 3 2 1 27 27 H 1.09003 * 109.46262 * 316.07499 * 4 2 1 28 28 H 1.08998 * 109.47128 * 196.07744 * 4 2 1 29 29 H 1.09000 * 110.72001 * 259.96891 * 7 5 4 30 30 H 1.08997 * 110.72089 * 23.24793 * 7 5 4 31 31 H 0.96702 * 114.00228 * 180.02562 * 10 8 7 32 32 H 1.08998 * 110.49594 * 278.45740 * 11 8 7 33 33 H 1.08993 * 110.34311 * 156.06274 * 11 8 7 34 34 H 0.96999 * 119.99980 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.8541 -2.2628 0.8537 6 1 0.8204 -2.4982 0.6005 7 6 2.7844 -2.6665 -0.3096 8 6 3.3069 -4.0595 0.1307 9 1 2.5898 -4.8421 -0.1172 10 8 4.5834 -4.3346 -0.4498 11 6 3.4257 -3.8737 1.6663 12 7 2.2687 -3.0367 2.0330 13 6 1.6813 -2.9844 3.2689 14 1 0.6294 -2.7563 3.3575 15 6 2.4378 -3.2248 4.4076 16 7 1.8489 -3.6117 5.5192 17 14 4.2916 -2.9988 4.3623 18 1 4.9290 -4.2392 3.8522 19 1 4.6301 -1.8638 3.4665 20 1 4.7891 -2.7138 5.7321 21 1 -0.3633 0.5121 0.8911 22 1 -0.3634 0.5157 -0.8889 23 1 -0.3633 -1.0276 -0.0020 24 1 3.0828 1.3431 -0.0709 25 1 1.5898 1.9163 -0.8525 26 1 1.7045 1.8723 0.9233 27 1 1.4346 -0.5123 2.0371 28 1 3.0475 -0.5218 1.2843 29 1 2.2253 -2.7415 -1.2423 30 1 3.6078 -1.9592 -0.4081 31 1 4.9503 -5.1948 -0.2036 32 1 4.3565 -3.3656 1.9184 33 1 3.3707 -4.8386 2.1701 34 1 2.3775 -3.7793 6.3151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085082631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:22 Heat of formation + Delta-G solvation = -16.664785 kcal Electronic energy + Delta-G solvation = -15319.855957 eV Core-core repulsion = 12867.675819 eV Total energy + Delta-G solvation = -2452.180138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.64668 -36.70912 -35.06806 -32.31759 -29.68550 -28.94990 -27.29951 -25.34147 -23.99324 -21.46235 -20.82767 -19.16803 -17.09008 -16.80652 -15.65090 -15.03461 -14.84278 -14.28515 -14.10140 -13.49681 -13.14293 -12.81117 -12.58377 -12.15518 -12.01241 -11.70630 -11.43478 -11.26411 -11.15214 -10.99089 -10.62792 -10.42445 -10.15999 -9.96122 -9.59457 -9.36860 -8.60035 -7.98969 -6.98387 -6.03094 -3.39119 3.32900 3.45441 3.51507 4.23862 4.51434 4.56264 5.13914 5.25190 5.38457 5.45125 5.47345 5.57037 5.62507 5.66800 5.81174 5.88807 6.02990 6.12006 6.15264 6.28971 6.31943 6.50961 6.54799 6.63471 6.67329 6.97517 7.37419 7.41255 7.79428 8.00811 8.28800 8.80373 9.63255 10.17190 11.12949 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.012895 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.535962 B = 2170.946994 C = 2824.367849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.027 3.973 4 C 0.046 3.954 5 C 0.166 3.834 6 H 0.046 0.954 7 C -0.100 4.100 8 C 0.080 3.920 9 H 0.066 0.934 10 O -0.567 6.567 11 C 0.093 3.907 12 N -0.598 5.598 13 C -0.246 4.246 14 H 0.087 0.913 15 C 0.032 3.968 16 N -0.902 5.902 17 Si 0.879 3.121 18 H -0.284 1.284 19 H -0.275 1.275 20 H -0.301 1.301 21 H 0.023 0.977 22 H 0.060 0.940 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.061 0.939 26 H 0.021 0.979 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.373 0.627 32 H 0.029 0.971 33 H 0.056 0.944 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.195 3.622 -10.994 11.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.122 4.122 4 C -0.083 4.083 5 C 0.059 3.941 6 H 0.064 0.936 7 C -0.138 4.138 8 C 0.020 3.980 9 H 0.084 0.916 10 O -0.371 6.371 11 C -0.033 4.033 12 N -0.324 5.324 13 C -0.373 4.373 14 H 0.104 0.896 15 C -0.168 4.168 16 N -0.544 5.544 17 Si 0.708 3.292 18 H -0.211 1.211 19 H -0.200 1.200 20 H -0.228 1.228 21 H 0.041 0.959 22 H 0.078 0.922 23 H 0.089 0.911 24 H 0.082 0.918 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.219 0.781 32 H 0.047 0.953 33 H 0.074 0.926 34 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.218 3.938 -11.410 12.131 hybrid contribution 0.919 0.076 1.288 1.584 sum 2.137 4.014 -10.122 11.096 Atomic orbital electron populations 1.22389 0.87937 1.02230 0.99754 1.62033 1.07633 1.12975 1.44512 1.22349 1.00511 0.89563 0.99797 1.22724 0.99616 0.95184 0.90796 1.21009 0.96698 0.89419 0.86940 0.93588 1.22443 0.98953 0.94550 0.97875 1.23213 0.84055 0.97550 0.93178 0.91614 1.86453 1.35788 1.41169 1.73696 1.22549 0.91709 0.95638 0.93404 1.44722 1.35495 1.44030 1.08198 1.18532 0.93419 1.45547 0.79800 0.89558 1.25289 0.97610 0.98943 0.94950 1.69846 1.35887 1.46456 1.02246 0.86917 0.87632 0.78948 0.75684 1.21121 1.20049 1.22849 0.95891 0.92167 0.91114 0.91759 0.92004 0.96032 0.93549 0.91681 0.91158 0.90838 0.78062 0.95327 0.92600 0.92598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 9.42 60.06 0.57 0.93 16 2 N -0.55 -8.75 4.74 -251.26 -1.19 -9.94 16 3 C 0.03 0.36 9.51 60.06 0.57 0.93 16 4 C 0.05 0.89 4.43 -3.82 -0.02 0.87 16 5 C 0.17 3.35 3.23 -66.95 -0.22 3.13 16 6 H 0.05 0.93 6.75 -51.93 -0.35 0.58 16 7 C -0.10 -1.80 6.02 -24.89 -0.15 -1.95 16 8 C 0.08 1.44 4.44 -24.46 -0.11 1.33 16 9 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 10 O -0.57 -9.36 13.47 -35.23 -0.47 -9.84 16 11 C 0.09 2.04 4.59 -2.40 -0.01 2.03 16 12 N -0.60 -14.37 2.77 -162.43 -0.45 -14.82 16 13 C -0.25 -6.85 9.97 -15.06 -0.15 -7.00 16 14 H 0.09 2.57 8.06 -52.48 -0.42 2.14 16 15 C 0.03 0.93 5.42 -17.43 -0.09 0.84 16 16 N -0.90 -27.49 13.97 55.49 0.78 -26.72 16 17 Si 0.88 22.67 24.62 -169.99 -4.19 18.49 16 18 H -0.28 -7.10 6.94 56.52 0.39 -6.70 16 19 H -0.27 -7.11 7.06 56.52 0.40 -6.71 16 20 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 21 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.07 1.04 6.72 -51.93 -0.35 0.69 16 24 H 0.06 0.86 8.07 -51.92 -0.42 0.44 16 25 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.05 0.99 7.70 -51.93 -0.40 0.59 16 28 H 0.06 1.32 7.76 -51.93 -0.40 0.92 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 1.37 7.77 -51.93 -0.40 0.97 16 31 H 0.37 4.50 9.12 45.56 0.42 4.92 16 32 H 0.03 0.68 5.58 -51.93 -0.29 0.39 16 33 H 0.06 1.26 7.89 -51.93 -0.41 0.86 16 34 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 270.29 15.07 4.07 4.07 Total: -1.00 -31.13 270.29 -5.78 -36.91 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -4.71 Total: 0.73 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 0.39 Total: 1.11 kcal Atomic # 7 Polarization: -50.61 SS G_CDS: -0.87 Total: -51.48 kcal Atomic # 8 Polarization: -9.36 SS G_CDS: -0.47 Total: -9.84 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.19 Total: 18.49 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -31.13 -5.78 -36.91 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.248 kcal (2) G-P(sol) polarization free energy of solvation -31.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds