Wall clock time and date at job start Mon Mar 30 2020 03:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46892 * 1 3 3 C 1.46898 * 111.00251 * 2 1 4 4 C 1.46907 * 111.00272 * 123.95774 * 2 1 3 5 5 C 1.52993 * 109.47368 * 76.07005 * 4 2 1 6 6 H 1.09000 * 110.00001 * 306.03433 * 5 4 2 7 7 C 1.54331 * 109.87838 * 67.12805 * 5 4 2 8 8 C 1.55158 * 102.93959 * 141.61281 * 7 5 4 9 9 H 1.09004 * 111.00929 * 82.57180 * 8 7 5 10 10 O 1.42896 * 111.00293 * 206.42740 * 8 7 5 11 11 C 1.55138 * 101.48615 * 324.33188 * 8 7 5 12 12 N 1.47018 * 109.88446 * 184.93729 * 5 4 2 13 13 C 1.36940 * 125.65061 * 61.60524 * 12 5 4 14 14 H 1.08005 * 119.99505 * 29.67877 * 13 12 5 15 15 C 1.38806 * 120.00197 * 209.67541 * 13 12 5 16 16 N 1.31614 * 119.99944 * 202.48559 * 15 13 12 17 17 Si 1.86806 * 120.00022 * 22.49197 * 15 13 12 18 18 H 1.48501 * 109.46690 * 274.91072 * 17 15 13 19 19 H 1.48501 * 109.46971 * 34.90620 * 17 15 13 20 20 H 1.48492 * 109.47319 * 154.90910 * 17 15 13 21 21 H 1.09007 * 109.46845 * 299.88656 * 1 2 3 22 22 H 1.09004 * 109.47252 * 59.88195 * 1 2 3 23 23 H 1.08996 * 109.47238 * 179.88990 * 1 2 3 24 24 H 1.09008 * 109.47139 * 183.95495 * 3 2 1 25 25 H 1.09000 * 109.47189 * 303.95160 * 3 2 1 26 26 H 1.09002 * 109.47241 * 63.95952 * 3 2 1 27 27 H 1.09003 * 109.46262 * 316.07499 * 4 2 1 28 28 H 1.08998 * 109.47128 * 196.07744 * 4 2 1 29 29 H 1.09000 * 110.72001 * 259.96891 * 7 5 4 30 30 H 1.08997 * 110.72089 * 23.24793 * 7 5 4 31 31 H 0.96702 * 114.00228 * 180.02562 * 10 8 7 32 32 H 1.08998 * 110.49594 * 278.45740 * 11 8 7 33 33 H 1.08993 * 110.34311 * 156.06274 * 11 8 7 34 34 H 0.96999 * 119.99980 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7661 1.1376 5 6 1.8541 -2.2628 0.8537 6 1 0.8204 -2.4982 0.6005 7 6 2.7844 -2.6665 -0.3096 8 6 3.3069 -4.0595 0.1307 9 1 2.5898 -4.8421 -0.1172 10 8 4.5834 -4.3346 -0.4498 11 6 3.4257 -3.8737 1.6663 12 7 2.2687 -3.0367 2.0330 13 6 1.6813 -2.9844 3.2689 14 1 0.6294 -2.7563 3.3575 15 6 2.4378 -3.2248 4.4076 16 7 1.8489 -3.6117 5.5192 17 14 4.2916 -2.9988 4.3623 18 1 4.9290 -4.2392 3.8522 19 1 4.6301 -1.8638 3.4665 20 1 4.7891 -2.7138 5.7321 21 1 -0.3633 0.5121 0.8911 22 1 -0.3634 0.5157 -0.8889 23 1 -0.3633 -1.0276 -0.0020 24 1 3.0828 1.3431 -0.0709 25 1 1.5898 1.9163 -0.8525 26 1 1.7045 1.8723 0.9233 27 1 1.4346 -0.5123 2.0371 28 1 3.0475 -0.5218 1.2843 29 1 2.2253 -2.7415 -1.2423 30 1 3.6078 -1.9592 -0.4081 31 1 4.9503 -5.1948 -0.2036 32 1 4.3565 -3.3656 1.9184 33 1 3.3707 -4.8386 2.1701 34 1 2.3775 -3.7793 6.3151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085082631.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:21 Heat of formation + Delta-G solvation = -42.077910 kcal Electronic energy + Delta-G solvation = -15320.957953 eV Core-core repulsion = 12867.675819 eV Total energy + Delta-G solvation = -2453.282134 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.22050 -38.02377 -36.59877 -34.35824 -31.49861 -30.50270 -28.44262 -26.94174 -25.85309 -22.87835 -22.41213 -20.81265 -19.00892 -18.30241 -17.40693 -16.63579 -16.22956 -15.78681 -15.54636 -15.05774 -14.90240 -14.53064 -14.31364 -13.62044 -13.39363 -13.32704 -12.91656 -12.71848 -12.61561 -12.57283 -12.34199 -12.23734 -11.76882 -11.71553 -11.41435 -10.91314 -10.70280 -9.31797 -8.97311 -8.25751 -5.57785 1.25899 1.34196 1.44375 2.36204 2.79550 3.00085 3.28754 3.61769 3.83965 3.92942 4.10254 4.18782 4.32494 4.46069 4.49777 4.63242 4.63641 4.77104 4.78312 4.91011 4.98836 5.01874 5.05360 5.09840 5.11331 5.43617 5.72461 6.00349 6.12073 6.16282 6.73602 6.88747 7.48222 8.09542 8.94556 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.012895 C = 0.009911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.535962 B = 2170.946994 C = 2824.367849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.025 3.975 4 C 0.059 3.941 5 C 0.162 3.838 6 H 0.047 0.953 7 C -0.090 4.090 8 C 0.097 3.903 9 H 0.085 0.915 10 O -0.569 6.569 11 C 0.086 3.914 12 N -0.614 5.614 13 C -0.232 4.232 14 H 0.055 0.945 15 C -0.020 4.020 16 N -0.947 5.947 17 Si 0.937 3.063 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.304 1.304 21 H 0.015 0.985 22 H 0.091 0.909 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.090 0.910 26 H 0.016 0.984 27 H 0.013 0.987 28 H 0.052 0.948 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.394 0.606 32 H 0.017 0.983 33 H 0.045 0.955 34 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.082 3.877 -13.498 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.270 5.270 3 C -0.123 4.123 4 C -0.071 4.071 5 C 0.056 3.944 6 H 0.065 0.935 7 C -0.128 4.128 8 C 0.037 3.963 9 H 0.103 0.897 10 O -0.376 6.376 11 C -0.040 4.040 12 N -0.341 5.341 13 C -0.361 4.361 14 H 0.072 0.928 15 C -0.216 4.216 16 N -0.593 5.593 17 Si 0.765 3.235 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.232 1.232 21 H 0.034 0.966 22 H 0.109 0.891 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.108 0.892 26 H 0.035 0.965 27 H 0.032 0.968 28 H 0.071 0.929 29 H 0.115 0.885 30 H 0.087 0.913 31 H 0.244 0.756 32 H 0.035 0.965 33 H 0.063 0.937 34 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.124 4.189 -13.960 14.729 hybrid contribution 0.566 0.019 1.986 2.065 sum 2.690 4.208 -11.974 12.974 Atomic orbital electron populations 1.22452 0.86791 1.02193 1.00874 1.62038 1.08656 1.14171 1.42138 1.22448 1.00805 0.88286 1.00810 1.22429 0.98470 0.95310 0.90844 1.21140 0.97348 0.89567 0.86320 0.93504 1.22377 0.98450 0.94347 0.97634 1.22989 0.85283 0.98178 0.89825 0.89713 1.86420 1.35004 1.43064 1.73112 1.22660 0.90176 0.94447 0.96690 1.44801 1.35827 1.45643 1.07799 1.18401 0.92344 1.43624 0.81715 0.92752 1.25807 1.01343 0.99702 0.94770 1.69949 1.37356 1.48899 1.03057 0.85974 0.83076 0.79193 0.75217 1.19524 1.20266 1.23248 0.96637 0.89088 0.91829 0.91564 0.89158 0.96503 0.96829 0.92922 0.88506 0.91262 0.75623 0.96495 0.93657 0.92675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.42 127.69 1.20 1.87 16 2 N -0.55 -16.40 4.74 -948.84 -4.50 -20.90 16 3 C 0.02 0.62 9.51 127.69 1.21 1.83 16 4 C 0.06 2.27 4.43 86.30 0.38 2.65 16 5 C 0.16 6.36 3.23 45.34 0.15 6.51 16 6 H 0.05 1.84 6.75 -2.39 -0.02 1.83 16 7 C -0.09 -2.98 6.02 31.79 0.19 -2.79 16 8 C 0.10 3.21 4.44 32.07 0.14 3.35 16 9 H 0.09 2.53 8.14 -2.38 -0.02 2.52 16 10 O -0.57 -16.63 13.47 -148.98 -2.01 -18.64 16 11 C 0.09 3.64 4.59 86.93 0.40 4.04 16 12 N -0.61 -29.37 2.77 -667.82 -1.85 -31.22 16 13 C -0.23 -13.25 9.97 84.03 0.84 -12.41 16 14 H 0.05 3.39 8.06 -2.91 -0.02 3.37 16 15 C -0.02 -1.18 5.42 84.86 0.46 -0.72 16 16 N -0.95 -59.35 13.97 21.65 0.30 -59.04 16 17 Si 0.94 47.43 24.62 68.60 1.69 49.12 16 18 H -0.27 -12.84 6.94 99.48 0.69 -12.15 16 19 H -0.28 -13.95 7.06 99.48 0.70 -13.25 16 20 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 21 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 22 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 23 H 0.06 1.77 6.72 -2.39 -0.02 1.76 16 24 H 0.07 1.63 8.07 -2.38 -0.02 1.61 16 25 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.02 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.01 0.59 7.70 -2.39 -0.02 0.57 16 28 H 0.05 2.11 7.76 -2.39 -0.02 2.10 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.07 2.37 7.77 -2.39 -0.02 2.35 16 31 H 0.39 7.98 9.12 -74.06 -0.68 7.31 16 32 H 0.02 0.78 5.58 -2.39 -0.01 0.77 16 33 H 0.05 2.00 7.89 -2.39 -0.02 1.98 16 34 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -67.27 270.29 -1.01 -68.28 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 0.37 Total: 8.06 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 4.98 Total: 4.34 kcal Atomic # 7 Polarization: -105.12 SS G_CDS: -6.05 Total: -111.16 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -2.01 Total: -18.64 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.69 Total: 49.12 kcal Total: -67.27 -1.01 -68.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085082631.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.204 kcal (2) G-P(sol) polarization free energy of solvation -67.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds