Wall clock time and date at job start Mon Mar 30 2020 03:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99869 * 2 1 4 4 C 1.52999 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46757 * 66.32498 * 4 3 2 6 6 C 1.46907 * 110.99685 * 161.71221 * 5 4 3 7 7 C 1.50694 * 109.47257 * 202.76924 * 6 5 4 8 8 H 1.07997 * 120.00000 * 4.90166 * 7 6 5 9 9 C 1.37871 * 120.00032 * 184.90291 * 7 6 5 10 10 N 1.31514 * 120.00494 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99845 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47061 * 59.99937 * 11 9 7 13 13 H 1.48504 * 109.46921 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47228 * 299.99526 * 11 9 7 15 15 C 1.46901 * 111.00131 * 285.66586 * 5 4 3 16 16 C 1.53514 * 114.17114 * 306.13929 * 15 5 4 17 17 N 1.47480 * 87.93006 * 220.32906 * 16 15 5 18 18 C 1.47483 * 87.83620 * 27.01016 * 17 16 15 19 19 H 1.09001 * 109.47334 * 300.00140 * 1 2 3 20 20 H 1.08997 * 109.47510 * 60.00532 * 1 2 3 21 21 H 1.09010 * 109.46985 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47034 * 59.99468 * 3 2 1 23 23 H 1.09003 * 109.46631 * 299.99655 * 3 2 1 24 24 H 1.08996 * 109.46990 * 306.33022 * 4 3 2 25 25 H 1.08993 * 109.47320 * 186.32519 * 4 3 2 26 26 H 1.09001 * 109.47020 * 322.77636 * 6 5 4 27 27 H 1.09003 * 109.46659 * 82.76725 * 6 5 4 28 28 H 0.96994 * 120.00333 * 179.97438 * 10 9 7 29 29 H 1.08995 * 113.38112 * 79.22055 * 15 5 4 30 30 H 1.08991 * 113.47432 * 105.55942 * 16 15 5 31 31 H 1.09001 * 113.52989 * 335.10302 * 16 15 5 32 32 H 1.00902 * 110.99729 * 138.70099 * 17 16 15 33 33 H 1.08999 * 113.47316 * 87.76048 * 18 17 16 34 34 H 1.08997 * 113.47317 * 218.21808 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9801 0.5914 -1.2676 6 6 5.4082 0.8486 -1.4969 7 6 5.7064 0.7482 -2.9706 8 1 4.9022 0.5952 -3.6751 9 6 7.0058 0.8516 -3.4196 10 7 7.9852 1.0374 -2.5618 11 14 7.3753 0.7279 -5.2466 12 1 6.6584 1.8081 -5.9709 13 1 8.8370 0.8706 -5.4668 14 1 6.9244 -0.5926 -5.7545 15 6 3.6919 -0.8486 -1.3048 16 6 4.2513 -1.6328 -0.1095 17 7 4.6180 -2.7052 -1.0531 18 6 4.7116 -1.6732 -2.1026 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 1.6885 1.8464 0.8899 23 1 1.6886 1.8463 -0.8901 24 1 3.8492 0.5493 0.8288 25 1 3.9782 2.1742 0.1139 26 1 5.6587 1.8485 -1.1427 27 1 6.0015 0.1120 -0.9551 28 1 8.8994 1.1098 -2.8777 29 1 2.6522 -1.0756 -1.5404 30 1 3.4886 -1.9297 0.6103 31 1 5.1111 -1.1551 0.3604 32 1 5.5279 -3.0830 -0.8353 33 1 5.6943 -1.2058 -2.1654 34 1 4.3391 -2.0047 -3.0718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086432841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:32 Heat of formation + Delta-G solvation = 4.351052 kcal Electronic energy + Delta-G solvation = -15310.004412 eV Core-core repulsion = 12858.735589 eV Total energy + Delta-G solvation = -2451.268823 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.54247 -37.46063 -34.65585 -32.65391 -29.57044 -27.00775 -26.26156 -25.01202 -24.56435 -22.08799 -21.27343 -18.00168 -16.65549 -16.30215 -16.05250 -15.59426 -14.80921 -14.54513 -14.45395 -13.60522 -13.04958 -12.76485 -12.29278 -11.83675 -11.72553 -11.66046 -11.24790 -10.95236 -10.84434 -10.69099 -10.52407 -10.43177 -9.97108 -9.58591 -9.31343 -9.13988 -8.46288 -8.20052 -7.16197 -6.05341 -4.04736 3.32893 3.36994 3.40545 4.12148 4.39786 4.75653 5.21673 5.28997 5.35401 5.39831 5.49223 5.66009 5.67404 5.74216 5.78201 5.87621 6.12996 6.18495 6.34678 6.37380 6.46269 6.76431 6.91158 7.03865 7.19090 7.37600 7.46599 7.82609 7.93876 8.10909 8.22603 8.52284 9.02915 9.56941 11.03915 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.009075 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.163685 B = 3084.561396 C = 3332.743566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.381 6.381 3 C 0.068 3.932 4 C 0.056 3.944 5 N -0.526 5.526 6 C 0.186 3.814 7 C -0.497 4.497 8 H 0.065 0.935 9 C 0.053 3.947 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.289 1.289 14 H -0.276 1.276 15 C 0.087 3.913 16 C -0.025 4.025 17 N -0.641 5.641 18 C -0.008 4.008 19 H 0.033 0.967 20 H 0.038 0.962 21 H 0.079 0.921 22 H 0.041 0.959 23 H 0.055 0.945 24 H 0.035 0.965 25 H 0.081 0.919 26 H 0.023 0.977 27 H -0.001 1.001 28 H 0.262 0.738 29 H 0.106 0.894 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.309 0.691 33 H 0.119 0.881 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.599 -1.203 5.147 10.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.008 4.008 4 C -0.073 4.073 5 N -0.250 5.250 6 C 0.061 3.939 7 C -0.536 4.536 8 H 0.083 0.917 9 C -0.148 4.148 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.215 1.215 14 H -0.201 1.201 15 C -0.023 4.023 16 C -0.158 4.158 17 N -0.265 5.265 18 C -0.137 4.137 19 H 0.051 0.949 20 H 0.056 0.944 21 H 0.098 0.902 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.053 0.947 25 H 0.099 0.901 26 H 0.041 0.959 27 H 0.017 0.983 28 H 0.071 0.929 29 H 0.123 0.877 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.120 0.880 33 H 0.137 0.863 34 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.258 -1.609 4.609 11.360 hybrid contribution 1.404 0.381 -0.076 1.457 sum -8.853 -1.228 4.532 10.022 Atomic orbital electron populations 1.22656 0.82379 1.02107 0.99332 1.88001 1.18504 1.28243 1.95191 1.22658 0.94388 0.84428 0.99373 1.22098 0.92681 0.99987 0.92512 1.62122 1.21969 1.11284 1.29642 1.19868 0.81090 0.95867 0.97072 1.21120 0.92318 1.48024 0.92111 0.91668 1.24983 0.96256 0.95693 0.97840 1.69942 0.99872 1.50141 1.34010 0.86593 0.76933 0.78796 0.85362 1.20178 1.21450 1.20145 1.23151 0.98977 0.86182 0.93946 1.24049 0.99946 0.94041 0.97730 1.67225 1.30361 1.22268 1.06685 1.24436 1.03087 0.90746 0.95465 0.94876 0.94378 0.90217 0.94112 0.92627 0.94692 0.90064 0.95865 0.98303 0.92854 0.87654 0.90983 0.92614 0.87985 0.86299 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.38 -5.99 8.23 -35.23 -0.29 -6.28 16 3 C 0.07 1.04 6.25 37.16 0.23 1.27 16 4 C 0.06 1.00 5.42 -3.82 -0.02 0.98 16 5 N -0.53 -11.26 4.56 -227.76 -1.04 -12.30 16 6 C 0.19 4.65 4.25 -4.97 -0.02 4.63 16 7 C -0.50 -13.39 6.42 -34.45 -0.22 -13.61 16 8 H 0.07 1.78 7.79 -52.49 -0.41 1.37 16 9 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 10 N -0.90 -25.87 13.29 55.43 0.74 -25.13 16 11 Si 0.90 21.31 29.54 -169.99 -5.02 16.29 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 C 0.09 1.78 3.52 -67.50 -0.24 1.54 16 16 C -0.03 -0.48 6.62 -7.54 -0.05 -0.53 16 17 N -0.64 -12.44 8.71 -122.67 -1.07 -13.51 16 18 C -0.01 -0.18 6.79 -7.54 -0.05 -0.23 16 19 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 20 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 21 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 22 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.03 0.62 6.52 -51.93 -0.34 0.29 16 25 H 0.08 1.40 7.60 -51.93 -0.39 1.01 16 26 H 0.02 0.62 7.55 -51.93 -0.39 0.23 16 27 H 0.00 -0.02 5.64 -51.93 -0.29 -0.31 16 28 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.11 2.18 6.81 -51.93 -0.35 1.83 16 30 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.12 6.78 -51.93 -0.35 0.76 16 32 H 0.31 5.63 8.91 -39.29 -0.35 5.28 16 33 H 0.12 2.93 4.43 -51.93 -0.23 2.70 16 34 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 LS Contribution 268.72 15.07 4.05 4.05 Total: -1.00 -28.60 268.72 -7.19 -35.80 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -5.21 Total: 4.18 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: 0.65 Total: -3.09 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -1.37 Total: -50.94 kcal Atomic # 8 Polarization: -5.99 SS G_CDS: -0.29 Total: -6.28 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -28.60 -7.19 -35.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.149 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds