Wall clock time and date at job start Mon Mar 30 2020 03:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99869 * 2 1 4 4 C 1.52999 * 109.47138 * 179.97438 * 3 2 1 5 5 N 1.46904 * 109.46757 * 66.32498 * 4 3 2 6 6 C 1.46907 * 110.99685 * 161.71221 * 5 4 3 7 7 C 1.50694 * 109.47257 * 202.76924 * 6 5 4 8 8 H 1.07997 * 120.00000 * 4.90166 * 7 6 5 9 9 C 1.37871 * 120.00032 * 184.90291 * 7 6 5 10 10 N 1.31514 * 120.00494 * 0.02562 * 9 7 6 11 11 Si 1.86807 * 119.99845 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47061 * 59.99937 * 11 9 7 13 13 H 1.48504 * 109.46921 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47228 * 299.99526 * 11 9 7 15 15 C 1.46901 * 111.00131 * 285.66586 * 5 4 3 16 16 C 1.53514 * 114.17114 * 306.13929 * 15 5 4 17 17 N 1.47480 * 87.93006 * 220.32906 * 16 15 5 18 18 C 1.47483 * 87.83620 * 27.01016 * 17 16 15 19 19 H 1.09001 * 109.47334 * 300.00140 * 1 2 3 20 20 H 1.08997 * 109.47510 * 60.00532 * 1 2 3 21 21 H 1.09010 * 109.46985 * 180.02562 * 1 2 3 22 22 H 1.08997 * 109.47034 * 59.99468 * 3 2 1 23 23 H 1.09003 * 109.46631 * 299.99655 * 3 2 1 24 24 H 1.08996 * 109.46990 * 306.33022 * 4 3 2 25 25 H 1.08993 * 109.47320 * 186.32519 * 4 3 2 26 26 H 1.09001 * 109.47020 * 322.77636 * 6 5 4 27 27 H 1.09003 * 109.46659 * 82.76725 * 6 5 4 28 28 H 0.96994 * 120.00333 * 179.97438 * 10 9 7 29 29 H 1.08995 * 113.38112 * 79.22055 * 15 5 4 30 30 H 1.08991 * 113.47432 * 105.55942 * 16 15 5 31 31 H 1.09001 * 113.52989 * 335.10302 * 16 15 5 32 32 H 1.00902 * 110.99729 * 138.70099 * 17 16 15 33 33 H 1.08999 * 113.47316 * 87.76048 * 18 17 16 34 34 H 1.08997 * 113.47317 * 218.21808 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9801 0.5914 -1.2676 6 6 5.4082 0.8486 -1.4969 7 6 5.7064 0.7482 -2.9706 8 1 4.9022 0.5952 -3.6751 9 6 7.0058 0.8516 -3.4196 10 7 7.9852 1.0374 -2.5618 11 14 7.3753 0.7279 -5.2466 12 1 6.6584 1.8081 -5.9709 13 1 8.8370 0.8706 -5.4668 14 1 6.9244 -0.5926 -5.7545 15 6 3.6919 -0.8486 -1.3048 16 6 4.2513 -1.6328 -0.1095 17 7 4.6180 -2.7052 -1.0531 18 6 4.7116 -1.6732 -2.1026 19 1 -0.3634 0.5138 0.8900 20 1 -0.3634 0.5137 -0.8900 21 1 -0.3633 -1.0278 0.0005 22 1 1.6885 1.8464 0.8899 23 1 1.6886 1.8463 -0.8901 24 1 3.8492 0.5493 0.8288 25 1 3.9782 2.1742 0.1139 26 1 5.6587 1.8485 -1.1427 27 1 6.0015 0.1120 -0.9551 28 1 8.8994 1.1098 -2.8777 29 1 2.6522 -1.0756 -1.5404 30 1 3.4886 -1.9297 0.6103 31 1 5.1111 -1.1551 0.3604 32 1 5.5279 -3.0830 -0.8353 33 1 5.6943 -1.2058 -2.1654 34 1 4.3391 -2.0047 -3.0718 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086432841.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:36:32 Heat of formation + Delta-G solvation = -18.789020 kcal Electronic energy + Delta-G solvation = -15311.007841 eV Core-core repulsion = 12858.735589 eV Total energy + Delta-G solvation = -2452.272252 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.19261 -38.63937 -36.33583 -34.64249 -31.12146 -28.80914 -27.47008 -26.51418 -26.26039 -23.92537 -22.75732 -19.70356 -18.52117 -18.03926 -17.31251 -16.99960 -16.43474 -16.27901 -15.69053 -15.19977 -14.53277 -14.43201 -14.17025 -13.48682 -13.15479 -13.02652 -12.91323 -12.78090 -12.36558 -12.33776 -12.20249 -11.98188 -11.84970 -11.29119 -11.12474 -10.56870 -10.39087 -9.88134 -8.89790 -8.15442 -6.21657 1.43306 1.44313 1.52196 2.42167 3.03292 3.11475 3.16282 3.65849 3.75602 4.09820 4.25697 4.38493 4.46992 4.55047 4.64296 4.67058 4.68367 4.77644 4.88078 4.95366 4.96826 5.09009 5.15084 5.19569 5.23297 5.53389 5.72135 6.12507 6.31074 6.38484 6.45087 6.66445 6.91261 7.44156 8.93052 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.036442 B = 0.009075 C = 0.008399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.163685 B = 3084.561396 C = 3332.743566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.406 6.406 3 C 0.077 3.923 4 C 0.051 3.949 5 N -0.533 5.533 6 C 0.204 3.796 7 C -0.501 4.501 8 H 0.058 0.942 9 C 0.007 3.993 10 N -0.933 5.933 11 Si 0.956 3.044 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.092 3.908 16 C -0.012 4.012 17 N -0.632 5.632 18 C -0.009 4.009 19 H 0.052 0.948 20 H 0.042 0.958 21 H 0.090 0.910 22 H 0.072 0.928 23 H 0.051 0.949 24 H 0.036 0.964 25 H 0.082 0.918 26 H 0.001 0.999 27 H -0.022 1.022 28 H 0.263 0.737 29 H 0.111 0.889 30 H 0.088 0.912 31 H 0.044 0.956 32 H 0.317 0.683 33 H 0.087 0.913 34 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.991 -1.480 5.148 12.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.325 6.325 3 C 0.000 4.000 4 C -0.077 4.077 5 N -0.257 5.257 6 C 0.077 3.923 7 C -0.540 4.540 8 H 0.077 0.923 9 C -0.191 4.191 10 N -0.574 5.574 11 Si 0.782 3.218 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.195 1.195 15 C -0.017 4.017 16 C -0.144 4.144 17 N -0.256 5.256 18 C -0.139 4.139 19 H 0.070 0.930 20 H 0.060 0.940 21 H 0.109 0.891 22 H 0.090 0.910 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.100 0.900 26 H 0.019 0.981 27 H -0.005 1.005 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.106 0.894 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.105 0.895 34 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.676 -1.890 4.618 12.697 hybrid contribution 1.774 0.446 -0.020 1.829 sum -9.902 -1.444 4.598 11.012 Atomic orbital electron populations 1.22840 0.80261 1.03261 1.00473 1.87936 1.20802 1.28371 1.95426 1.22521 0.92087 0.84725 1.00659 1.22225 0.95007 0.99689 0.90733 1.62070 1.19353 1.12187 1.32107 1.19522 0.83105 0.93808 0.95818 1.21297 0.92249 1.47475 0.92952 0.92345 1.25723 0.96119 0.95397 1.01900 1.70052 1.00168 1.51267 1.35873 0.85627 0.76769 0.78996 0.80436 1.19596 1.21137 1.19498 1.23118 0.98724 0.85623 0.94223 1.23913 0.99658 0.93430 0.97437 1.67203 1.30856 1.21547 1.05998 1.24223 1.01745 0.91731 0.96186 0.92956 0.93966 0.89149 0.91024 0.93050 0.94609 0.89970 0.98084 1.00471 0.92845 0.87167 0.89389 0.93783 0.87099 0.89468 0.91489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -11.78 8.23 -148.98 -1.23 -13.00 16 3 C 0.08 2.16 6.25 71.98 0.45 2.61 16 4 C 0.05 1.79 5.42 86.30 0.47 2.26 16 5 N -0.53 -22.71 4.56 -874.49 -3.99 -26.70 16 6 C 0.20 10.38 4.25 85.55 0.36 10.74 16 7 C -0.50 -27.33 6.42 25.60 0.16 -27.16 16 8 H 0.06 3.21 7.79 -2.91 -0.02 3.19 16 9 C 0.01 0.36 5.46 84.65 0.46 0.83 16 10 N -0.93 -54.45 13.29 21.45 0.28 -54.16 16 11 Si 0.96 43.75 29.54 68.60 2.03 45.78 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.16 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 C 0.09 3.71 3.52 45.37 0.16 3.87 16 16 C -0.01 -0.45 6.62 83.58 0.55 0.10 16 17 N -0.63 -23.83 8.71 -542.00 -4.72 -28.55 16 18 C -0.01 -0.39 6.79 83.57 0.57 0.18 16 19 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 20 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 21 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 22 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.04 1.24 6.52 -2.39 -0.02 1.22 16 25 H 0.08 2.81 7.60 -2.39 -0.02 2.79 16 26 H 0.00 0.06 7.55 -2.39 -0.02 0.04 16 27 H -0.02 -1.23 5.64 -2.39 -0.01 -1.24 16 28 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 29 H 0.11 4.39 6.81 -2.39 -0.02 4.37 16 30 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 31 H 0.04 1.75 6.78 -2.39 -0.02 1.74 16 32 H 0.32 11.29 8.91 -89.69 -0.80 10.49 16 33 H 0.09 4.38 4.43 -2.39 -0.01 4.37 16 34 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 Total: -1.00 -60.31 268.72 -2.90 -63.21 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 0.28 Total: 18.17 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 4.44 Total: -4.75 kcal Atomic # 7 Polarization: -100.99 SS G_CDS: -8.42 Total: -109.41 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: -1.23 Total: -13.00 kcal Atomic # 14 Polarization: 43.75 SS G_CDS: 2.03 Total: 45.78 kcal Total: -60.31 -2.90 -63.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086432841.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.421 kcal (2) G-P(sol) polarization free energy of solvation -60.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds