Wall clock time and date at job start Mon Mar 30 2020 03:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46853 * 2 1 4 4 O 1.42899 * 109.46985 * 240.00283 * 2 1 3 5 5 C 1.52996 * 109.47051 * 119.99919 * 2 1 3 6 6 H 1.08998 * 109.50006 * 305.06684 * 5 2 1 7 7 C 1.53036 * 109.49703 * 184.99962 * 5 2 1 8 8 C 1.53040 * 109.54108 * 178.68726 * 7 5 2 9 9 H 1.09006 * 109.49665 * 301.37930 * 8 7 5 10 10 N 1.46895 * 109.50183 * 181.31911 * 8 7 5 11 11 C 1.53189 * 109.31356 * 61.36302 * 8 7 5 12 12 N 1.46924 * 108.77609 * 305.36977 * 11 8 7 13 13 C 1.36939 * 120.62863 * 233.58182 * 12 11 8 14 14 H 1.08003 * 119.99911 * 151.84900 * 13 12 11 15 15 C 1.38807 * 120.00301 * 331.85544 * 13 12 11 16 16 N 1.31618 * 120.00108 * 343.05862 * 15 13 12 17 17 Si 1.86806 * 120.00196 * 163.06196 * 15 13 12 18 18 H 1.48502 * 109.46746 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47127 * 119.99780 * 17 15 13 20 20 H 1.48496 * 109.47091 * 239.99836 * 17 15 13 21 21 C 1.46927 * 118.74178 * 53.60805 * 12 11 8 22 22 H 1.08997 * 109.47267 * 299.99783 * 1 2 3 23 23 H 1.08996 * 109.47512 * 59.99694 * 1 2 3 24 24 H 1.09001 * 109.46853 * 179.97438 * 1 2 3 25 25 H 0.96704 * 113.99713 * 299.99729 * 4 2 1 26 26 H 1.09002 * 109.45864 * 58.66488 * 7 5 2 27 27 H 1.09000 * 109.45090 * 298.69707 * 7 5 2 28 28 H 1.00899 * 111.00350 * 179.97438 * 10 8 7 29 29 H 1.00898 * 110.99814 * 303.95279 * 10 8 7 30 30 H 1.08996 * 109.58592 * 65.15835 * 11 8 7 31 31 H 1.09003 * 109.58736 * 185.58101 * 11 8 7 32 32 H 0.96997 * 120.00536 * 180.02562 * 16 15 13 33 33 H 1.08998 * 109.58508 * 186.60539 * 21 12 11 34 34 H 1.09000 * 109.58289 * 66.17738 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 1 1.6047 -0.2628 2.1372 7 6 3.5652 -0.6136 1.3143 8 6 4.0737 -1.3065 2.5805 9 1 3.6198 -0.8427 3.4564 10 7 5.5347 -1.1754 2.6583 11 6 3.6953 -2.7902 2.5330 12 7 2.2452 -2.9019 2.3248 13 6 1.4737 -3.6481 3.1752 14 1 0.4348 -3.3939 3.3254 15 6 2.0269 -4.7312 3.8444 16 7 3.1643 -5.2489 3.4313 17 14 1.1570 -5.4541 5.3311 18 1 -0.0939 -4.6966 5.5894 19 1 0.8286 -6.8783 5.0684 20 1 2.0451 -5.3615 6.5176 21 6 1.6385 -2.1983 1.1865 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.7210 -1.5952 -1.2329 26 1 3.8545 0.4371 1.3341 27 1 4.0006 -1.0937 0.4379 28 1 5.8946 -1.6250 3.4868 29 1 5.9753 -1.5414 1.8276 30 1 4.2210 -3.2751 1.7105 31 1 3.9671 -3.2670 3.4747 32 1 3.5508 -6.0059 3.8987 33 1 0.5533 -2.2846 1.2399 34 1 1.9965 -2.6351 0.2542 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108005875.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:31 Heat of formation + Delta-G solvation = -66.567870 kcal Electronic energy + Delta-G solvation = -15415.925535 eV Core-core repulsion = 12961.581436 eV Total energy + Delta-G solvation = -2454.344098 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.31950 -37.83146 -35.56058 -34.02680 -32.44018 -30.51207 -28.72002 -27.31988 -24.71198 -23.62497 -21.62408 -20.65546 -18.78601 -17.50799 -16.98046 -16.58310 -16.41028 -15.76570 -15.32261 -14.97172 -14.76819 -14.36443 -14.25125 -13.81089 -13.07106 -12.90065 -12.79103 -12.74700 -12.45015 -12.16483 -12.05539 -11.96784 -11.64431 -11.62010 -11.19680 -10.66462 -10.58758 -9.73420 -8.67334 -7.90581 -5.37858 1.42642 1.45239 1.55304 2.46868 3.22382 3.38207 3.64051 3.78597 4.00354 4.07856 4.15538 4.37795 4.42477 4.44470 4.62049 4.65727 4.82600 4.98256 5.04999 5.11290 5.18980 5.23756 5.34375 5.41809 5.48811 5.59789 5.65635 6.21281 6.34811 6.59765 6.81537 7.09819 7.80899 8.32651 9.13778 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.030576 B = 0.010521 C = 0.008567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.528068 B = 2660.769414 C = 3267.464637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.116 3.884 3 H 0.104 0.896 4 O -0.577 6.577 5 C -0.125 4.125 6 H 0.071 0.929 7 C -0.082 4.082 8 C 0.073 3.927 9 H 0.059 0.941 10 N -0.836 5.836 11 C 0.157 3.843 12 N -0.607 5.607 13 C -0.263 4.263 14 H 0.068 0.932 15 C -0.051 4.051 16 N -0.934 5.934 17 Si 0.965 3.035 18 H -0.265 1.265 19 H -0.292 1.292 20 H -0.291 1.291 21 C 0.147 3.853 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.056 0.944 25 H 0.380 0.620 26 H 0.068 0.932 27 H 0.051 0.949 28 H 0.341 0.659 29 H 0.340 0.660 30 H -0.010 1.010 31 H 0.050 0.950 32 H 0.249 0.751 33 H 0.058 0.942 34 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.119 9.126 -4.407 10.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.057 3.943 3 H 0.122 0.878 4 O -0.385 6.385 5 C -0.146 4.146 6 H 0.090 0.910 7 C -0.120 4.120 8 C -0.040 4.040 9 H 0.077 0.923 10 N -0.364 5.364 11 C 0.029 3.971 12 N -0.330 5.330 13 C -0.393 4.393 14 H 0.086 0.914 15 C -0.246 4.246 16 N -0.580 5.580 17 Si 0.794 3.206 18 H -0.189 1.189 19 H -0.219 1.219 20 H -0.218 1.218 21 C 0.022 3.978 22 H 0.090 0.910 23 H 0.090 0.910 24 H 0.075 0.925 25 H 0.229 0.771 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.008 0.992 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -1.923 10.366 -4.418 11.431 hybrid contribution -0.413 -2.533 0.977 2.746 sum -2.336 7.833 -3.440 8.869 Atomic orbital electron populations 1.22470 0.95402 1.02774 1.03112 1.21888 0.93529 0.95951 0.82951 0.87812 1.86477 1.77880 1.29921 1.44210 1.22202 0.96059 0.97178 0.99146 0.91033 1.21277 0.94782 1.00014 0.95962 1.21956 0.88165 0.95438 0.98403 0.92255 1.59115 1.04318 1.64843 1.08083 1.21406 0.84043 0.93230 0.98386 1.44212 1.03754 1.56035 1.28986 1.19564 0.95158 1.05921 1.18654 0.91415 1.25794 0.98840 0.96789 1.03172 1.70186 1.22057 1.24816 1.40989 0.85237 0.78312 0.77646 0.79449 1.18945 1.21916 1.21779 1.21092 0.96700 0.90795 0.89203 0.90966 0.91034 0.92490 0.77054 0.91384 0.93047 0.84754 0.84832 0.99200 0.93119 0.94175 0.92327 0.96533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 9.30 71.98 0.67 -3.36 16 2 C 0.12 3.04 3.34 30.59 0.10 3.14 16 3 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 4 O -0.58 -16.36 12.80 -148.98 -1.91 -18.26 16 5 C -0.12 -4.04 2.17 -10.72 -0.02 -4.06 16 6 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 7 C -0.08 -2.78 4.59 30.62 0.14 -2.64 16 8 C 0.07 2.82 3.40 44.99 0.15 2.97 16 9 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 10 N -0.84 -27.66 9.26 -168.36 -1.56 -29.22 16 11 C 0.16 7.51 4.87 86.36 0.42 7.93 16 12 N -0.61 -29.96 2.99 -699.10 -2.09 -32.05 16 13 C -0.26 -14.28 9.58 84.03 0.81 -13.48 16 14 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 15 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 16 N -0.93 -54.92 11.20 21.65 0.24 -54.68 16 17 Si 0.97 44.55 29.59 68.60 2.03 46.58 16 18 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 19 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 20 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 21 C 0.15 5.80 5.13 86.36 0.44 6.24 16 22 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 23 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 24 H 0.06 1.35 6.70 -2.39 -0.02 1.33 16 25 H 0.38 9.78 7.08 -74.05 -0.52 9.26 16 26 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.05 1.82 7.86 -2.39 -0.02 1.80 16 28 H 0.34 10.94 9.04 -89.69 -0.81 10.13 16 29 H 0.34 10.58 8.98 -89.70 -0.81 9.78 16 30 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 31 H 0.05 2.76 6.06 -2.39 -0.01 2.74 16 32 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 33 H 0.06 2.24 6.66 -2.39 -0.02 2.22 16 34 H 0.02 0.66 6.45 -2.39 -0.02 0.65 16 Total: -1.00 -61.93 266.47 -1.19 -63.12 By element: Atomic # 1 Polarization: 31.19 SS G_CDS: -1.03 Total: 30.16 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: 3.13 Total: -5.65 kcal Atomic # 7 Polarization: -112.54 SS G_CDS: -3.41 Total: -115.95 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -1.91 Total: -18.26 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -61.93 -1.19 -63.12 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108005875.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.448 kcal (2) G-P(sol) polarization free energy of solvation -61.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds