Wall clock time and date at job start Mon Mar 30 2020 02:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99849 * 2 1 4 4 H 1.48503 * 109.47170 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46682 * 299.99562 * 3 2 1 6 6 H 1.48495 * 109.47527 * 59.99404 * 3 2 1 7 7 C 1.38812 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99964 * 197.38305 * 7 2 1 9 9 N 1.36939 * 120.00027 * 17.38091 * 7 2 1 10 10 C 1.46919 * 120.63177 * 27.65751 * 9 7 2 11 11 C 1.53186 * 108.77925 * 126.41530 * 10 9 7 12 12 C 1.53036 * 109.34080 * 54.61488 * 11 10 9 13 13 C 1.53040 * 109.54163 * 298.68755 * 12 11 10 14 14 H 1.08996 * 109.49809 * 301.35199 * 13 12 11 15 15 N 1.46900 * 109.49947 * 181.28203 * 13 12 11 16 16 C 1.46897 * 111.00003 * 155.06559 * 15 13 12 17 17 C 1.53001 * 109.47208 * 179.97438 * 16 15 13 18 18 O 1.42900 * 109.46873 * 64.99628 * 17 16 15 19 19 C 1.46932 * 120.62652 * 207.68156 * 9 7 2 20 20 H 0.96993 * 120.00232 * 359.97438 * 1 2 3 21 21 H 1.09005 * 109.58588 * 246.20532 * 10 9 7 22 22 H 1.09008 * 109.58582 * 6.62114 * 10 9 7 23 23 H 1.08996 * 109.50277 * 174.58394 * 11 10 9 24 24 H 1.09004 * 109.49240 * 294.65221 * 11 10 9 25 25 H 1.09000 * 109.49155 * 178.64777 * 12 11 10 26 26 H 1.08999 * 109.43314 * 58.69296 * 12 11 10 27 27 H 1.00899 * 111.00236 * 31.10641 * 15 13 12 28 28 H 1.09000 * 109.46864 * 60.00173 * 16 15 13 29 29 H 1.08995 * 109.47227 * 300.00313 * 16 15 13 30 30 H 1.09008 * 109.47005 * 304.99901 * 17 16 15 31 31 H 1.09000 * 109.47505 * 185.00364 * 17 16 15 32 32 H 0.96700 * 113.99640 * 180.02562 * 18 17 16 33 33 H 1.09001 * 109.58757 * 113.80158 * 19 9 7 34 34 H 1.08993 * 109.70502 * 353.44047 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3963 -1.2126 6 1 1.8913 2.3966 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0533 -1.2233 0.2800 9 7 1.3725 -2.3612 -0.3532 10 6 0.2281 -2.3348 -1.2741 11 6 0.5010 -3.3050 -2.4277 12 6 0.8194 -4.6902 -1.8605 13 6 2.0746 -4.6101 -0.9886 14 1 2.9087 -4.2404 -1.5848 15 7 2.3970 -5.9460 -0.4693 16 6 3.8270 -6.0563 -0.1518 17 6 4.1235 -7.4579 0.3855 18 8 3.8891 -8.4217 -0.6432 19 6 1.8195 -3.6547 0.1815 20 1 -0.4850 0.8400 0.0004 21 1 -0.6742 -2.6411 -0.7447 22 1 0.0987 -1.3264 -1.6675 23 1 -0.3798 -3.3673 -3.0669 24 1 1.3493 -2.9470 -3.0111 25 1 0.9904 -5.3883 -2.6799 26 1 -0.0199 -5.0369 -1.2577 27 1 2.1143 -6.6644 -1.1190 28 1 4.0898 -5.3152 0.6030 29 1 4.4140 -5.8807 -1.0532 30 1 3.4723 -7.6668 1.2344 31 1 5.1644 -7.5123 0.7041 32 1 4.0570 -9.3347 -0.3723 33 1 1.0470 -4.0688 0.8296 34 1 2.7395 -3.5193 0.7500 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108133339.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:24 Heat of formation + Delta-G solvation = -35.737341 kcal Electronic energy + Delta-G solvation = -14884.465240 eV Core-core repulsion = 12431.458054 eV Total energy + Delta-G solvation = -2453.007186 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 214.142 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.15825 -36.92558 -34.60465 -32.49085 -30.37881 -29.56939 -26.61696 -25.20479 -22.35473 -21.67347 -20.90195 -18.96716 -17.61352 -16.64890 -15.40918 -15.15317 -14.57195 -14.39733 -13.92095 -13.38420 -13.28192 -12.91438 -12.46889 -12.13560 -11.92235 -11.66011 -11.08949 -10.97348 -10.79484 -10.59999 -10.18581 -10.11381 -10.06992 -9.82949 -9.54918 -9.35991 -8.44885 -8.02927 -6.60754 -5.74016 -3.15491 3.39581 3.47199 3.49620 4.25854 4.39468 4.59427 5.18128 5.32983 5.38519 5.42296 5.53716 5.65252 5.74777 5.91627 5.93591 6.01613 6.17427 6.39520 6.43399 6.66127 6.75152 6.85414 6.91524 7.01242 7.41133 7.50339 7.56077 7.72725 7.80556 7.84787 8.50791 9.26910 9.91044 10.47959 11.34713 Molecular weight = 214.14amu Principal moments of inertia in cm(-1) A = 0.043420 B = 0.007340 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 644.704111 B = 3813.663974 C = 4251.649298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.250 4.250 8 H 0.064 0.936 9 N -0.593 5.593 10 C 0.169 3.831 11 C -0.140 4.140 12 C -0.108 4.108 13 C 0.070 3.930 14 H 0.039 0.961 15 N -0.683 5.683 16 C 0.060 3.940 17 C 0.076 3.924 18 O -0.576 6.576 19 C 0.162 3.838 20 H 0.253 0.747 21 H 0.018 0.982 22 H 0.086 0.914 23 H 0.050 0.950 24 H 0.052 0.948 25 H 0.041 0.959 26 H 0.062 0.938 27 H 0.340 0.660 28 H 0.086 0.914 29 H 0.031 0.969 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.376 0.624 33 H 0.025 0.975 34 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.386 -12.555 -1.638 13.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.217 1.217 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.316 5.316 10 C 0.043 3.957 11 C -0.180 4.180 12 C -0.146 4.146 13 C -0.041 4.041 14 H 0.057 0.943 15 N -0.316 5.316 16 C -0.070 4.070 17 C -0.001 4.001 18 O -0.381 6.381 19 C 0.035 3.965 20 H 0.063 0.937 21 H 0.036 0.964 22 H 0.105 0.895 23 H 0.069 0.931 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.081 0.919 27 H 0.159 0.841 28 H 0.104 0.896 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.222 0.778 33 H 0.043 0.957 34 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.958 -11.697 -1.306 12.771 hybrid contribution 0.986 0.319 -0.539 1.168 sum 5.943 -11.378 -1.844 12.968 Atomic orbital electron populations 1.70053 1.05245 1.25287 1.54151 1.25017 0.95267 0.98330 1.01119 0.86244 0.79342 0.84068 0.77263 1.20329 1.21584 1.21730 1.19220 0.92676 0.84903 1.41144 0.91780 1.44061 1.35759 1.01294 1.50513 1.20795 0.88666 0.98274 0.87917 1.22183 1.00007 0.95846 0.99984 1.21558 0.97776 0.97590 0.97715 1.22158 0.96404 0.88480 0.97073 0.94344 1.60508 1.15708 1.05250 1.50087 1.22001 0.89883 0.94843 1.00233 1.22306 0.98639 0.88905 0.90293 1.86469 1.92074 1.19134 1.40459 1.20788 0.97600 0.85792 0.92286 0.93737 0.96363 0.89533 0.93116 0.92933 0.93988 0.91941 0.84142 0.89604 0.95047 0.92641 0.93631 0.77766 0.95691 0.93462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.74 11.19 55.49 0.62 -26.12 16 2 C 0.00 0.03 4.91 -17.43 -0.09 -0.06 16 3 Si 0.90 22.03 29.59 -169.99 -5.03 17.00 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.25 -7.05 9.59 -15.06 -0.14 -7.19 16 8 H 0.06 1.78 7.89 -52.49 -0.41 1.37 16 9 N -0.59 -15.47 2.99 -172.31 -0.52 -15.99 16 10 C 0.17 4.20 5.31 -3.72 -0.02 4.18 16 11 C -0.14 -2.82 6.08 -26.62 -0.16 -2.98 16 12 C -0.11 -1.97 5.17 -26.69 -0.14 -2.11 16 13 C 0.07 1.31 2.64 -67.59 -0.18 1.14 16 14 H 0.04 0.77 7.80 -51.93 -0.41 0.37 16 15 N -0.68 -11.04 6.31 -106.60 -0.67 -11.71 16 16 C 0.06 0.85 5.90 -3.82 -0.02 0.83 16 17 C 0.08 0.85 7.39 37.16 0.27 1.13 16 18 O -0.58 -6.44 13.18 -35.23 -0.46 -6.90 16 19 C 0.16 3.64 5.98 -3.70 -0.02 3.62 16 20 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 21 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 22 H 0.09 2.38 6.04 -51.92 -0.31 2.06 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 25 H 0.04 0.67 8.10 -51.93 -0.42 0.25 16 26 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.34 5.28 7.89 -39.29 -0.31 4.97 16 28 H 0.09 1.24 7.56 -51.93 -0.39 0.84 16 29 H 0.03 0.46 8.06 -51.93 -0.42 0.05 16 30 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.38 2.36 9.12 45.56 0.42 2.78 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 1.05 7.41 -51.93 -0.38 0.66 16 LS Contribution 272.72 15.07 4.11 4.11 Total: -1.00 -31.05 272.72 -7.19 -38.24 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.74 Total: 2.83 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: -0.50 Total: -1.46 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.57 Total: -53.82 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: -0.46 Total: -6.90 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.03 Total: 17.00 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -31.05 -7.19 -38.24 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108133339.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.501 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds